RNA–Protein interactions for RNA: ENST00000538654.5

SNHG1-209, Transcript of small nucleolar RNA host gene 1, human

TSL 2

Gene SNHG1, Length 2,768 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SNHG1-209	ENST00000538654	INTS4	Q96HW7	963 aa	Known RBP	10.91	□□□□□ -0.66
SNHG1-209	ENST00000538654	TULP4	Q9NRJ4	1543 aa		10.91	□□□□□ -0.66
SNHG1-209	ENST00000538654	SLC52A1	Q9NWF4	448 aa		10.9	□□□□□ -0.66
SNHG1-209	ENST00000538654	NSFL1C	Q9UNZ2	370 aa	Known RBP	10.9	□□□□□ -0.66
SNHG1-209	ENST00000538654	RIPOR2	Q9Y4F9	1068 aa		10.9	□□□□□ -0.66
SNHG1-209	ENST00000538654	KIF3B	O15066	747 aa		10.9	□□□□□ -0.66
SNHG1-209	ENST00000538654	GNAI1	P63096	354 aa		10.9	□□□□□ -0.66
SNHG1-209	ENST00000538654	SPOCK2	Q92563	424 aa		10.9	□□□□□ -0.66
SNHG1-209	ENST00000538654	ZFYVE9	O95405	1425 aa		10.9	□□□□□ -0.66
SNHG1-209	ENST00000538654	LMTK2	Q8IWU2	1503 aa		10.9	□□□□□ -0.66
SNHG1-209	ENST00000538654	ARHGEF28	Q8N1W1	1705 aa	Known RBP	10.9	□□□□□ -0.66
SNHG1-209	ENST00000538654	GLI2	P10070	1586 aa		10.89	□□□□□ -0.67
SNHG1-209	ENST00000538654	ASXL2	Q76L83	1435 aa		10.89	□□□□□ -0.67
SNHG1-209	ENST00000538654	PNPLA6	Q8IY17	1366 aa		10.89	□□□□□ -0.67
SNHG1-209	ENST00000538654	CBX1	P83916	185 aa		10.89	□□□□□ -0.67
SNHG1-209	ENST00000538654	GPATCH11	Q8N954	259 aa		10.89	□□□□□ -0.67
SNHG1-209	ENST00000538654	RNF25	Q96BH1	459 aa	Predicted RBP	10.89	□□□□□ -0.67
SNHG1-209	ENST00000538654	SDS	P20132	328 aa		10.89	□□□□□ -0.67
SNHG1-209	ENST00000538654	PDCL2	Q8N4E4	241 aa		10.89	□□□□□ -0.67
SNHG1-209	ENST00000538654	IFT57	Q9NWB7	429 aa		10.89	□□□□□ -0.67
SNHG1-209	ENST00000538654	CUL4A	Q13619	759 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	RPAP2	Q8IXW5	612 aa	Predicted RBP	10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	MCC	P23508	829 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	AFAP1	Q8N556	730 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	POM121	Q96HA1	1249 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	TMX3	Q96JJ7	454 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	FEZ1	Q99689	392 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	LRRC7	Q96NW7	1537 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	FAM135B	Q49AJ0	1406 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654		A0A1W2PP64	1363 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	ZCCHC11	Q5TAX3	1644 aa	Known RBP	10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	ABCA9	Q8IUA7	1624 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	CCDC183	Q5T5S1	534 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	ANKRD44	Q8N8A2	993 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	TERF2IP	Q9NYB0	399 aa		10.88	□□□□□ -0.67
SNHG1-209	ENST00000538654	KNDC1	Q76NI1	1749 aa		10.87	□□□□□ -0.67
SNHG1-209	ENST00000538654	NEK4	P51957	841 aa		10.87	□□□□□ -0.67
SNHG1-209	ENST00000538654	WDR33	Q9C0J8	1336 aa	Known RBP	10.87	□□□□□ -0.67
SNHG1-209	ENST00000538654	ADCY5	O95622	1261 aa		10.87	□□□□□ -0.67
SNHG1-209	ENST00000538654	NFE2L2	Q16236	605 aa		10.87	□□□□□ -0.67
SNHG1-209	ENST00000538654	BCL2L12	Q9HB09	334 aa		10.87	□□□□□ -0.67
SNHG1-209	ENST00000538654	BARGIN	Q6ZT62	677 aa		10.86	□□□□□ -0.67
SNHG1-209	ENST00000538654	GOLGA6L6	A8MZA4	724 aa		10.86	□□□□□ -0.67
SNHG1-209	ENST00000538654	LMOD3	Q0VAK6	560 aa		10.86	□□□□□ -0.67
SNHG1-209	ENST00000538654	ATP2B3	Q16720	1220 aa		10.86	□□□□□ -0.67
SNHG1-209	ENST00000538654	TMEM87A	Q8NBN3	555 aa		10.86	□□□□□ -0.67
SNHG1-209	ENST00000538654	EVI5L	Q96CN4	794 aa		10.86	□□□□□ -0.67
SNHG1-209	ENST00000538654	GGNBP2	Q9H3C7	697 aa		10.86	□□□□□ -0.67
SNHG1-209	ENST00000538654	USP25	Q9UHP3	1055 aa		10.86	□□□□□ -0.67
SNHG1-209	ENST00000538654	ATAD2	Q6PL18	1390 aa		10.86	□□□□□ -0.67
SNHG1-209	ENST00000538654	FRMPD1	Q5SYB0	1578 aa		10.85	□□□□□ -0.67
SNHG1-209	ENST00000538654	PEX14	O75381	377 aa		10.85	□□□□□ -0.67
SNHG1-209	ENST00000538654	TWISTNB	Q3B726	338 aa	Predicted RBP	10.85	□□□□□ -0.67
SNHG1-209	ENST00000538654	TMTC2	Q8N394	836 aa		10.85	□□□□□ -0.67
SNHG1-209	ENST00000538654	ANKRD7	Q92527	254 aa		10.85	□□□□□ -0.67
SNHG1-209	ENST00000538654	TMEM132E	Q6IEE7	984 aa		10.85	□□□□□ -0.67
SNHG1-209	ENST00000538654	KAT6B	Q8WYB5	2073 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	ZMYND10	O75800	440 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	ZNF853	P0CG23	659 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	MX1	P20591	662 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	PRKAR2B	P31323	418 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	SYCP1	Q15431	976 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	CADPS2	Q86UW7	1296 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	OSBPL3	Q9H4L5	887 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	TTC12	Q9H892	705 aa	Predicted RBP	10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	CABP2	Q9NPB3	220 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	KIF20B	Q96Q89	1820 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	FYB1	O15117	783 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	CTIF	O43310	598 aa	Known RBP	10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	C16orf71	Q8IYS4	520 aa	Predicted RBP	10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	ATP10D	Q9P241	1426 aa		10.84	□□□□□ -0.67
SNHG1-209	ENST00000538654	RTL1	A6NKG5	1358 aa		10.83	□□□□□ -0.68
SNHG1-209	ENST00000538654	USP48	Q86UV5	1035 aa		10.83	□□□□□ -0.68
SNHG1-209	ENST00000538654	TSPYL6	Q8N831	410 aa		10.83	□□□□□ -0.68
SNHG1-209	ENST00000538654	KIAA1524	Q8TCG1	905 aa		10.83	□□□□□ -0.68
SNHG1-209	ENST00000538654	TSC1	Q92574	1164 aa		10.83	□□□□□ -0.68
SNHG1-209	ENST00000538654	ZNF830	Q96NB3	372 aa	Predicted RBP	10.83	□□□□□ -0.68
SNHG1-209	ENST00000538654	OGFR	Q9NZT2	677 aa		10.83	□□□□□ -0.68
SNHG1-209	ENST00000538654	SSH2	Q76I76	1423 aa		10.83	□□□□□ -0.68
SNHG1-209	ENST00000538654	HMMR	O75330	724 aa		10.83	□□□□□ -0.68
SNHG1-209	ENST00000538654	CHAMP1	Q96JM3	812 aa		10.83	□□□□□ -0.68
SNHG1-209	ENST00000538654	MBIP	Q9NS73	344 aa		10.83	□□□□□ -0.68
SNHG1-209	ENST00000538654	GABPB1	Q06547	395 aa	Predicted RBP	10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	EXOC8	Q8IYI6	725 aa		10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	IL17RA	Q96F46	866 aa		10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	RGS12	O14924	1447 aa		10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	EPB41L2	O43491	1005 aa	Known RBP	10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	ONECUT3	O60422	494 aa	Predicted RBP	10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	CEP85	Q6P2H3	762 aa		10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	CLTC	Q00610	1675 aa	Known RBP	10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	RIOK3	O14730	519 aa	Known RBP	10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	VGF	O15240	615 aa	Predicted RBP	10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	UBE2H	P62256	183 aa		10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	SRPK2	P78362	688 aa	Known RBP	10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	JARID2	Q92833	1246 aa	Predicted RBP	10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	ATP6V1D	Q9Y5K8	247 aa		10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	CAMSAP1	Q5T5Y3	1602 aa		10.82	□□□□□ -0.68
SNHG1-209	ENST00000538654	GADD45B	O75293	160 aa	Predicted RBP	10.81	□□□□□ -0.68
SNHG1-209	ENST00000538654	OTUD7A	Q8TE49	926 aa	Predicted RBP	10.81	□□□□□ -0.68

Retrieved 100 of 20,778 RNA–protein pairs in 32 ms