RNA–Protein interactions for RNA: ENST00000534442.5

ECHDC1-223, Transcript of ethylmalonyl-CoA decarboxylase 1, human

TSL 5

Gene ECHDC1, Length 577 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
ECHDC1-223	ENST00000534442	SLAIN2	Q9P270	581 aa		7.75	□□□□□ -1.17
ECHDC1-223	ENST00000534442	TRPC5	Q9UL62	973 aa	Predicted RBP	7.75	□□□□□ -1.17
ECHDC1-223	ENST00000534442	MYT1L	Q9UL68	1186 aa		7.75	□□□□□ -1.17
ECHDC1-223	ENST00000534442	SHANK3	Q9BYB0	1731 aa		7.75	□□□□□ -1.17
ECHDC1-223	ENST00000534442	KIF14	Q15058	1648 aa		7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	ZBTB7C	A1YPR0	619 aa		7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	ZBBX	A8MT70	800 aa		7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	LMOD1	P29536	600 aa	Predicted RBP	7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	MMP16	P51512	607 aa		7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	COPS2	P61201	443 aa		7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	EIF4G2	P78344	907 aa	Known RBP eCLIP	7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	TBC1D9	Q6ZT07	1266 aa		7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	SPSB2	Q99619	263 aa		7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	PRDM9	Q9NQV7	894 aa		7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	EVA1B	Q9NVM1	165 aa		7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	DIP2A	Q14689	1571 aa		7.74	□□□□□ -1.17
ECHDC1-223	ENST00000534442	ZC3H13	Q5T200	1668 aa	Known RBP	7.73	□□□□□ -1.17
ECHDC1-223	ENST00000534442	CTH	P32929	405 aa		7.73	□□□□□ -1.17
ECHDC1-223	ENST00000534442	USP21	Q9UK80	565 aa		7.73	□□□□□ -1.17
ECHDC1-223	ENST00000534442	MAFB	Q9Y5Q3	323 aa	Predicted RBP	7.73	□□□□□ -1.17
ECHDC1-223	ENST00000534442	AHDC1	Q5TGY3	1603 aa	Predicted RBP	7.73	□□□□□ -1.17
ECHDC1-223	ENST00000534442	ZC3H4	Q9UPT8	1303 aa	Known RBP	7.73	□□□□□ -1.17
ECHDC1-223	ENST00000534442	IGF1R	P08069	1367 aa		7.72	□□□□□ -1.17
ECHDC1-223	ENST00000534442	ATRN	O75882	1429 aa		7.72	□□□□□ -1.17
ECHDC1-223	ENST00000534442	POTEM	A6NI47	508 aa		7.72	□□□□□ -1.17
ECHDC1-223	ENST00000534442	CCNYL3	P0C7X3	344 aa		7.72	□□□□□ -1.17
ECHDC1-223	ENST00000534442	KCNH2	Q12809	1159 aa		7.72	□□□□□ -1.17
ECHDC1-223	ENST00000534442	NUDT12	Q9BQG2	462 aa		7.72	□□□□□ -1.17
ECHDC1-223	ENST00000534442	AATK	Q6ZMQ8	1374 aa		7.71	□□□□□ -1.17
ECHDC1-223	ENST00000534442	ZNF518A	Q6AHZ1	1483 aa		7.71	□□□□□ -1.18
ECHDC1-223	ENST00000534442	RALGAPB	Q86X10	1494 aa		7.71	□□□□□ -1.18
ECHDC1-223	ENST00000534442	PIK3CD	O00329	1044 aa		7.71	□□□□□ -1.18
ECHDC1-223	ENST00000534442	TLL1	O43897	1013 aa		7.71	□□□□□ -1.18
ECHDC1-223	ENST00000534442	KCTD17	Q8N5Z5	321 aa		7.71	□□□□□ -1.18
ECHDC1-223	ENST00000534442	KCTD12	Q96CX2	325 aa	Known RBP	7.71	□□□□□ -1.18
ECHDC1-223	ENST00000534442	OCSTAMP	Q9BR26	566 aa		7.71	□□□□□ -1.18
ECHDC1-223	ENST00000534442	SPON1	Q9HCB6	807 aa		7.71	□□□□□ -1.18
ECHDC1-223	ENST00000534442	ATP7A	Q04656	1500 aa		7.7	□□□□□ -1.18
ECHDC1-223	ENST00000534442	ATP9B	O43861	1147 aa		7.7	□□□□□ -1.18
ECHDC1-223	ENST00000534442	CDCA8	Q53HL2	280 aa		7.7	□□□□□ -1.18
ECHDC1-223	ENST00000534442	AEBP1	Q8IUX7	1158 aa		7.7	□□□□□ -1.18
ECHDC1-223	ENST00000534442	THEMIS	Q8N1K5	641 aa	Predicted RBP	7.7	□□□□□ -1.18
ECHDC1-223	ENST00000534442	TIAM1	Q13009	1591 aa		7.69	□□□□□ -1.18
ECHDC1-223	ENST00000534442	ZPR1	O75312	459 aa		7.69	□□□□□ -1.18
ECHDC1-223	ENST00000534442	ADH1B	P00325	375 aa		7.69	□□□□□ -1.18
ECHDC1-223	ENST00000534442	MTR	Q99707	1265 aa		7.69	□□□□□ -1.18
ECHDC1-223	ENST00000534442	ARHGAP23	Q9P227	1491 aa		7.68	□□□□□ -1.18
ECHDC1-223	ENST00000534442	CARNS1	A5YM72	827 aa		7.68	□□□□□ -1.18
ECHDC1-223	ENST00000534442	ATG7	O95352	703 aa		7.68	□□□□□ -1.18
ECHDC1-223	ENST00000534442	ADAMTS2	O95450	1211 aa		7.68	□□□□□ -1.18
ECHDC1-223	ENST00000534442	PTCRA	Q6ISU1	281 aa	Predicted RBP	7.68	□□□□□ -1.18
ECHDC1-223	ENST00000534442	PDXDC2P	Q6P474	469 aa		7.68	□□□□□ -1.18
ECHDC1-223	ENST00000534442	AFAP1	Q8N556	730 aa		7.68	□□□□□ -1.18
ECHDC1-223	ENST00000534442	GPSM3	Q9Y4H4	160 aa		7.68	□□□□□ -1.18
ECHDC1-223	ENST00000534442	MSH6	P52701	1360 aa		7.68	□□□□□ -1.18
ECHDC1-223	ENST00000534442	FAM135A	Q9P2D6	1515 aa		7.68	□□□□□ -1.18
ECHDC1-223	ENST00000534442	FAM83G	A6ND36	823 aa		7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	CSB-PGBD3	P0DP91	1061 aa		7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	PTK2	Q05397	1052 aa		7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	TJAP1	Q5JTD0	557 aa		7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	KANK4	Q5T7N3	995 aa	Predicted RBP	7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	NYAP1	Q6ZVC0	841 aa		7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	NFATC2IP	Q8NCF5	419 aa		7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	ARMC2	Q8NEN0	867 aa		7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	FAM174A	Q8TBP5	190 aa		7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	ZNF516	Q92618	1163 aa		7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	GPKOW	Q92917	476 aa	Predicted RBP eCLIP	7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	UST	Q9Y2C2	406 aa		7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	UGGT1	Q9NYU2	1555 aa		7.67	□□□□□ -1.18
ECHDC1-223	ENST00000534442	KCNQ2	O43526	872 aa		7.66	□□□□□ -1.18
ECHDC1-223	ENST00000534442	PDE4C	Q08493	712 aa		7.66	□□□□□ -1.18
ECHDC1-223	ENST00000534442	TNR	Q92752	1358 aa		7.66	□□□□□ -1.18
ECHDC1-223	ENST00000534442	SPHKAP	Q2M3C7	1700 aa		7.66	□□□□□ -1.18
ECHDC1-223	ENST00000534442	MLLT1	Q03111	559 aa	Predicted RBP	7.65	□□□□□ -1.18
ECHDC1-223	ENST00000534442	GOLGB1	Q14789	3259 aa	Known RBP	7.65	□□□□□ -1.18
ECHDC1-223	ENST00000534442	CARMIL1	Q5VZK9	1371 aa		7.65	□□□□□ -1.18
ECHDC1-223	ENST00000534442	BRWD3	Q6RI45	1802 aa		7.65	□□□□□ -1.18
ECHDC1-223	ENST00000534442	PHTF2	Q8N3S3	785 aa		7.65	□□□□□ -1.18
ECHDC1-223	ENST00000534442	MPND	Q8N594	471 aa		7.65	□□□□□ -1.18
ECHDC1-223	ENST00000534442	JMY	Q8N9B5	988 aa		7.65	□□□□□ -1.18
ECHDC1-223	ENST00000534442	UNC93B1	Q9H1C4	597 aa		7.65	□□□□□ -1.18
ECHDC1-223	ENST00000534442	CEP126	Q9P2H0	1117 aa		7.65	□□□□□ -1.18
ECHDC1-223	ENST00000534442	KIAA1210	Q9ULL0	1709 aa		7.65	□□□□□ -1.18
ECHDC1-223	ENST00000534442	TMEM88B	A6NKF7	163 aa		7.64	□□□□□ -1.19
ECHDC1-223	ENST00000534442	SKI	P12755	728 aa		7.64	□□□□□ -1.19
ECHDC1-223	ENST00000534442	PTPN5	P54829	565 aa		7.64	□□□□□ -1.19
ECHDC1-223	ENST00000534442	NBPF14	Q5TI25	921 aa		7.64	□□□□□ -1.19
ECHDC1-223	ENST00000534442	SH3BP5L	Q7L8J4	393 aa		7.64	□□□□□ -1.19
ECHDC1-223	ENST00000534442	ADAM32	Q8TC27	787 aa		7.64	□□□□□ -1.19
ECHDC1-223	ENST00000534442	VRTN	Q9H8Y1	702 aa		7.64	□□□□□ -1.19
ECHDC1-223	ENST00000534442	IL21	Q9HBE4	155 aa		7.64	□□□□□ -1.19
ECHDC1-223	ENST00000534442	PCDHB9	Q9Y5E1	797 aa		7.64	□□□□□ -1.19
ECHDC1-223	ENST00000534442	NRK	Q7Z2Y5	1582 aa		7.63	□□□□□ -1.19
ECHDC1-223	ENST00000534442	USP17L3	A6NCW0	530 aa		7.63	□□□□□ -1.19
ECHDC1-223	ENST00000534442	USP17L4	A6NCW7	530 aa		7.63	□□□□□ -1.19
ECHDC1-223	ENST00000534442	USP17L5	A8MUK1	530 aa		7.63	□□□□□ -1.19
ECHDC1-223	ENST00000534442	USP17L2	Q6R6M4	530 aa		7.63	□□□□□ -1.19
ECHDC1-223	ENST00000534442	USP17L1	Q7RTZ2	530 aa		7.63	□□□□□ -1.19
ECHDC1-223	ENST00000534442	PLEKHM2	Q8IWE5	1019 aa		7.63	□□□□□ -1.19
ECHDC1-223	ENST00000534442	CCDC24	Q8N4L8	307 aa		7.63	□□□□□ -1.19

Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms