RNA–Protein interactions for RNA: ENST00000531118.5

CD44-232, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 877 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-232ENST00000531118 FLAD1Q8NFF5 587 aa11.89□□□□□ -0.51
CD44-232ENST00000531118 RBM46Q8TBY0 533 aaKnown RBP11.89□□□□□ -0.51
CD44-232ENST00000531118 PALLDQ8WX93 1383 aa11.89□□□□□ -0.51
CD44-232ENST00000531118 PCNTO95613 3336 aa11.89□□□□□ -0.51
CD44-232ENST00000531118 C10orf71Q711Q0 1435 aa11.88□□□□□ -0.51
CD44-232ENST00000531118 SLC34A2O95436 690 aa11.88□□□□□ -0.51
CD44-232ENST00000531118 NME9Q86XW9 330 aa11.88□□□□□ -0.51
CD44-232ENST00000531118 RASEFQ8IZ41 740 aa11.88□□□□□ -0.51
CD44-232ENST00000531118 PLEKHG2Q9H7P9 1386 aa11.88□□□□□ -0.51
CD44-232ENST00000531118 AMIGO3Q86WK7 504 aa11.87□□□□□ -0.51
CD44-232ENST00000531118 SUGP2Q8IX01 1082 aaKnown RBP eCLIP11.87□□□□□ -0.51
CD44-232ENST00000531118 EDC4Q6P2E9 1401 aaKnown RBP11.86□□□□□ -0.51
CD44-232ENST00000531118 KCPQ6ZWJ8 1503 aa11.86□□□□□ -0.51
CD44-232ENST00000531118 PHF14O94880 888 aa11.85□□□□□ -0.51
CD44-232ENST00000531118 LTV1Q96GA3 475 aaPredicted RBP11.85□□□□□ -0.51
CD44-232ENST00000531118 AK7Q96M32 723 aa11.85□□□□□ -0.51
CD44-232ENST00000531118 C4AP0C0L4 1744 aa11.85□□□□□ -0.51
CD44-232ENST00000531118 FSTL1Q12841 308 aa11.84□□□□□ -0.51
CD44-232ENST00000531118 ZCRB1Q8TBF4 217 aaKnown RBP11.84□□□□□ -0.51
CD44-232ENST00000531118 IP6K1Q92551 441 aa11.84□□□□□ -0.51
CD44-232ENST00000531118 RTN4Q9NQC3 1192 aaKnown RBP11.84□□□□□ -0.51
CD44-232ENST00000531118 SBF1O95248 1867 aa11.84□□□□□ -0.51
CD44-232ENST00000531118 HSPA1AP0DMV8 641 aaKnown RBP11.83□□□□□ -0.52
CD44-232ENST00000531118 HSPA1BP0DMV9 641 aaKnown RBP11.83□□□□□ -0.52
CD44-232ENST00000531118 DCAF8Q5TAQ9 597 aa11.83□□□□□ -0.52
CD44-232ENST00000531118 C16orf71Q8IYS4 520 aaPredicted RBP11.83□□□□□ -0.52
CD44-232ENST00000531118 CIZ1Q9ULV3 898 aaPredicted RBP11.83□□□□□ -0.52
CD44-232ENST00000531118 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP11.82□□□□□ -0.52
CD44-232ENST00000531118 C19orf67A6NJJ6 358 aa11.82□□□□□ -0.52
CD44-232ENST00000531118 CD44P16070 742 aaKnown RBP11.82□□□□□ -0.52
CD44-232ENST00000531118 TIAM2Q8IVF5 1701 aa11.82□□□□□ -0.52
CD44-232ENST00000531118 A0A1W2PP64 1363 aa11.81□□□□□ -0.52
CD44-232ENST00000531118 RTL1A6NKG5 1358 aa11.81□□□□□ -0.52
CD44-232ENST00000531118 HMGB2P26583 209 aaKnown RBP11.81□□□□□ -0.52
CD44-232ENST00000531118 SSFA2P28290 1259 aa11.81□□□□□ -0.52
CD44-232ENST00000531118 SMIM5Q71RC9 77 aa11.81□□□□□ -0.52
CD44-232ENST00000531118 BCS1LQ9Y276 419 aa11.81□□□□□ -0.52
CD44-232ENST00000531118 COL5A3P25940 1745 aaPredicted RBP11.8□□□□□ -0.52
CD44-232ENST00000531118 MAP3K19Q56UN5 1328 aa11.8□□□□□ -0.52
CD44-232ENST00000531118 PCDH11XQ9BZA7 1347 aa11.8□□□□□ -0.52
CD44-232ENST00000531118 PCDH11YQ9BZA8 1340 aa11.8□□□□□ -0.52
CD44-232ENST00000531118 ROCK2O75116 1388 aaKnown RBP11.79□□□□□ -0.52
CD44-232ENST00000531118 HOXC9P31274 260 aa11.79□□□□□ -0.52
CD44-232ENST00000531118 TSPYL2Q9H2G4 693 aaPredicted RBP11.79□□□□□ -0.52
CD44-232ENST00000531118 CGNL1Q0VF96 1302 aa11.79□□□□□ -0.52
CD44-232ENST00000531118 SMG6Q86US8 1419 aaKnown RBP11.78□□□□□ -0.52
CD44-232ENST00000531118 MMP10P09238 476 aa11.78□□□□□ -0.52
CD44-232ENST00000531118 C9orf131Q5VYM1 1079 aa11.78□□□□□ -0.52
CD44-232ENST00000531118 ARHGAP27Q6ZUM4 889 aa11.78□□□□□ -0.52
CD44-232ENST00000531118 KDM2BQ8NHM5 1336 aa11.78□□□□□ -0.52
CD44-232ENST00000531118 TGFB2P61812 414 aa11.77□□□□□ -0.53
CD44-232ENST00000531118 HDGFL2Q7Z4V5 671 aaPredicted RBP11.77□□□□□ -0.53
CD44-232ENST00000531118 USHBP1Q8N6Y0 703 aa11.77□□□□□ -0.53
CD44-232ENST00000531118 LINC00116Q8NCU8 138 aa11.77□□□□□ -0.53
CD44-232ENST00000531118 SMC1BQ8NDV3 1235 aa11.77□□□□□ -0.53
CD44-232ENST00000531118 SMARCC1Q92922 1105 aaPredicted RBP11.77□□□□□ -0.53
CD44-232ENST00000531118 ZNF831Q5JPB2 1677 aa11.77□□□□□ -0.53
CD44-232ENST00000531118 HAX1O00165 279 aa11.76□□□□□ -0.53
CD44-232ENST00000531118 FCHSD2O94868 740 aa11.76□□□□□ -0.53
CD44-232ENST00000531118 MPRIPQ6WCQ1 1025 aa11.76□□□□□ -0.53
CD44-232ENST00000531118 KIF20BQ96Q89 1820 aa11.76□□□□□ -0.53
CD44-232ENST00000531118 A0A0G2JLW4 131 aa11.75□□□□□ -0.53
CD44-232ENST00000531118 GNPATO15228 680 aa11.75□□□□□ -0.53
CD44-232ENST00000531118 RAPGEF4Q8WZA2 1011 aa11.75□□□□□ -0.53
CD44-232ENST00000531118 DLEC1Q9Y238 1755 aa11.74□□□□□ -0.53
CD44-232ENST00000531118 DPEP1P16444 411 aa11.74□□□□□ -0.53
CD44-232ENST00000531118 TATP17735 454 aaPredicted RBP11.74□□□□□ -0.53
CD44-232ENST00000531118 AMPHP49418 695 aa11.74□□□□□ -0.53
CD44-232ENST00000531118 NBPF6Q5VWK0 638 aa11.74□□□□□ -0.53
CD44-232ENST00000531118 TMC1Q8TDI8 760 aa11.74□□□□□ -0.53
CD44-232ENST00000531118 NBPF4Q96M43 638 aa11.74□□□□□ -0.53
CD44-232ENST00000531118 RNF181Q9P0P0 153 aa11.74□□□□□ -0.53
CD44-232ENST00000531118 KDRP35968 1356 aa11.74□□□□□ -0.53
CD44-232ENST00000531118 CCDC88AQ3V6T2 1871 aa11.74□□□□□ -0.53
CD44-232ENST00000531118 LOC102724428A0A0B4J2F2 783 aa11.73□□□□□ -0.53
CD44-232ENST00000531118 SIK1P57059 783 aa11.73□□□□□ -0.53
CD44-232ENST00000531118 RRAGCQ9HB90 399 aa11.73□□□□□ -0.53
CD44-232ENST00000531118 CCDC87Q9NVE4 849 aa11.73□□□□□ -0.53
CD44-232ENST00000531118 MYH14Q7Z406 1995 aaKnown RBP11.72□□□□□ -0.53
CD44-232ENST00000531118 ANKRD26Q9UPS8 1709 aa11.72□□□□□ -0.53
CD44-232ENST00000531118 KDM6AO15550 1401 aaPredicted RBP11.72□□□□□ -0.53
CD44-232ENST00000531118 NCAPD2Q15021 1401 aa11.72□□□□□ -0.53
CD44-232ENST00000531118 CYP27B1O15528 508 aa11.72□□□□□ -0.53
CD44-232ENST00000531118 ECM2O94769 699 aaPredicted RBP11.72□□□□□ -0.53
CD44-232ENST00000531118 CHRM1P11229 460 aaPredicted RBP11.72□□□□□ -0.53
CD44-232ENST00000531118 ITPK1Q13572 414 aa11.72□□□□□ -0.53
CD44-232ENST00000531118 DCAF5Q96JK2 942 aa11.72□□□□□ -0.53
CD44-232ENST00000531118 SLC12A5Q9H2X9 1139 aa11.72□□□□□ -0.53
CD44-232ENST00000531118 ZC3H4Q9UPT8 1303 aaKnown RBP11.71□□□□□ -0.53
CD44-232ENST00000531118 ZNF579Q8NAF0 562 aaKnown RBP11.71□□□□□ -0.53
CD44-232ENST00000531118 PIGBQ92521 554 aa11.71□□□□□ -0.53
CD44-232ENST00000531118 COG3Q96JB2 828 aa11.71□□□□□ -0.53
CD44-232ENST00000531118 TERF2IPQ9NYB0 399 aa11.71□□□□□ -0.53
CD44-232ENST00000531118 FBLN1P23142 703 aa11.7□□□□□ -0.54
CD44-232ENST00000531118 KCNA3P22001 575 aa11.69□□□□□ -0.54
CD44-232ENST00000531118 RRS1Q15050 365 aaKnown RBP11.69□□□□□ -0.54
CD44-232ENST00000531118 L3MBTL2Q969R5 705 aa11.69□□□□□ -0.54
CD44-232ENST00000531118 VIRMAQ69YN4 1812 aaKnown RBP11.69□□□□□ -0.54
CD44-232ENST00000531118 INSRP06213 1382 aa11.68□□□□□ -0.54
CD44-232ENST00000531118 FLT4P35916 1363 aa11.68□□□□□ -0.54
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms