RNA–Protein interactions for RNA: ENST00000529476.1

USF1-209, Transcript of upstream transcription factor 1, humanhuman

TSL 3

Gene USF1, Length 581 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF1-209ENST00000529476 APAF1O14727 1248 aa18.49■□□□□ 0.55
USF1-209ENST00000529476 ERVV-2B6SEH9 535 aa18.48■□□□□ 0.55
USF1-209ENST00000529476 RIPK4P57078 832 aa18.48■□□□□ 0.55
USF1-209ENST00000529476 NEUROD2Q15784 382 aa18.48■□□□□ 0.55
USF1-209ENST00000529476 IFFO2Q5TF58 517 aa18.48■□□□□ 0.55
USF1-209ENST00000529476 IL17REQ8NFR9 667 aa18.48■□□□□ 0.55
USF1-209ENST00000529476 DCTN1Q14203 1278 aa18.47■□□□□ 0.55
USF1-209ENST00000529476 MCM10Q7L590 875 aa18.47■□□□□ 0.55
USF1-209ENST00000529476 RTF1Q92541 710 aaKnown RBP18.47■□□□□ 0.55
USF1-209ENST00000529476 MRC1P22897 1456 aa18.46■□□□□ 0.55
USF1-209ENST00000529476 HTATSF1O43719 755 aaKnown RBP18.46■□□□□ 0.55
USF1-209ENST00000529476 CABP4P57796 275 aa18.46■□□□□ 0.55
USF1-209ENST00000529476 PIGBQ92521 554 aa18.46■□□□□ 0.55
USF1-209ENST00000529476 PDGFDQ9GZP0 370 aaPredicted RBP18.46■□□□□ 0.55
USF1-209ENST00000529476 TMOD3Q9NYL9 352 aa18.46■□□□□ 0.55
USF1-209ENST00000529476 SIPA1L3O60292 1781 aaPredicted RBP18.45■□□□□ 0.54
USF1-209ENST00000529476 CEMIPQ8WUJ3 1361 aa18.45■□□□□ 0.54
USF1-209ENST00000529476 NFATC2IPQ8NCF5 419 aa18.45■□□□□ 0.54
USF1-209ENST00000529476 THUMPD2Q9BTF0 503 aaKnown RBP18.44■□□□□ 0.54
USF1-209ENST00000529476 SLC52A2Q9HAB3 445 aa18.44■□□□□ 0.54
USF1-209ENST00000529476 ANO8Q9HCE9 1232 aaPredicted RBP18.44■□□□□ 0.54
USF1-209ENST00000529476 C1QTNF8P60827 252 aa18.43■□□□□ 0.54
USF1-209ENST00000529476 TRIM35Q9UPQ4 493 aa18.43■□□□□ 0.54
USF1-209ENST00000529476 LMOD3Q0VAK6 560 aa18.42■□□□□ 0.54
USF1-209ENST00000529476 TEFQ10587 303 aa18.42■□□□□ 0.54
USF1-209ENST00000529476 CASZ1Q86V15 1759 aa18.42■□□□□ 0.54
USF1-209ENST00000529476 RGPD3A6NKT7 1758 aaPredicted RBP18.4■□□□□ 0.54
USF1-209ENST00000529476 RGPD4Q7Z3J3 1758 aa18.4■□□□□ 0.54
USF1-209ENST00000529476 ZBTB7AO95365 584 aa18.4■□□□□ 0.54
USF1-209ENST00000529476 PTGER2P43116 358 aa18.4■□□□□ 0.54
USF1-209ENST00000529476 ASAP1Q9ULH1 1129 aa18.4■□□□□ 0.54
USF1-209ENST00000529476 PAPPAQ13219 1627 aa18.4■□□□□ 0.54
USF1-209ENST00000529476 LY75O60449 1722 aa18.4■□□□□ 0.54
USF1-209ENST00000529476 ATG3Q9NT62 314 aa18.39■□□□□ 0.53
USF1-209ENST00000529476 SALL2Q9Y467 1007 aaPredicted RBP18.39■□□□□ 0.53
USF1-209ENST00000529476 PLSCR1O15162 318 aa18.38■□□□□ 0.53
USF1-209ENST00000529476 PALLDQ8WX93 1383 aa18.38■□□□□ 0.53
USF1-209ENST00000529476 SLC39A6Q13433 755 aa18.37■□□□□ 0.53
USF1-209ENST00000529476 ATF5Q9Y2D1 282 aaPredicted RBP18.37■□□□□ 0.53
USF1-209ENST00000529476 UTRNP46939 3433 aa18.37■□□□□ 0.53
USF1-209ENST00000529476 BTBD11A6QL63 1104 aa18.36■□□□□ 0.53
USF1-209ENST00000529476 TAF7Q15545 349 aaPredicted RBP18.36■□□□□ 0.53
USF1-209ENST00000529476 PROM2Q8N271 834 aa18.36■□□□□ 0.53
USF1-209ENST00000529476 SMARCC1Q92922 1105 aaPredicted RBP18.36■□□□□ 0.53
USF1-209ENST00000529476 SYT17Q9BSW7 474 aa18.36■□□□□ 0.53
USF1-209ENST00000529476 FHDC1Q9C0D6 1143 aaPredicted RBP18.36■□□□□ 0.53
USF1-209ENST00000529476 CCDC27Q2M243 656 aa18.35■□□□□ 0.53
USF1-209ENST00000529476 MIS18AQ9NYP9 233 aa18.35■□□□□ 0.53
USF1-209ENST00000529476 KDM3BQ7LBC6 1761 aa18.35■□□□□ 0.53
USF1-209ENST00000529476 UBR2Q8IWV8 1755 aa18.35■□□□□ 0.53
USF1-209ENST00000529476 KCNQ4P56696 695 aa18.34■□□□□ 0.53
USF1-209ENST00000529476 TXNRD1Q16881 649 aa18.34■□□□□ 0.53
USF1-209ENST00000529476 NCBP3Q53F19 620 aaKnown RBP18.34■□□□□ 0.53
USF1-209ENST00000529476 WWC1Q8IX03 1113 aa18.34■□□□□ 0.53
USF1-209ENST00000529476 KCPQ6ZWJ8 1503 aa18.33■□□□□ 0.53
USF1-209ENST00000529476 KCNQ3O43525 872 aa18.33■□□□□ 0.52
USF1-209ENST00000529476 CHD4Q14839 1912 aa18.33■□□□□ 0.52
USF1-209ENST00000529476 PTCD1O75127 700 aaKnown RBP18.32■□□□□ 0.52
USF1-209ENST00000529476 ZNF790Q6PG37 636 aa18.32■□□□□ 0.52
USF1-209ENST00000529476 TTC5Q8N0Z6 440 aa18.32■□□□□ 0.52
USF1-209ENST00000529476 RBM42Q9BTD8 480 aaKnown RBP18.32■□□□□ 0.52
USF1-209ENST00000529476 CCNL1Q9UK58 526 aaPredicted RBP18.32■□□□□ 0.52
USF1-209ENST00000529476 LAS1LQ9Y4W2 734 aaKnown RBP18.32■□□□□ 0.52
USF1-209ENST00000529476 LOC102724428A0A0B4J2F2 783 aa18.31■□□□□ 0.52
USF1-209ENST00000529476 SIK1P57059 783 aa18.31■□□□□ 0.52
USF1-209ENST00000529476 SLC4A9Q96Q91 983 aa18.31■□□□□ 0.52
USF1-209ENST00000529476 LRRC4BQ9NT99 713 aa18.31■□□□□ 0.52
USF1-209ENST00000529476 TAF1LQ8IZX4 1826 aa18.3■□□□□ 0.52
USF1-209ENST00000529476 SLC27A3Q5K4L6 730 aa18.3■□□□□ 0.52
USF1-209ENST00000529476 NGEFQ8N5V2 710 aa18.3■□□□□ 0.52
USF1-209ENST00000529476 ZNF831Q5JPB2 1677 aa18.3■□□□□ 0.52
USF1-209ENST00000529476 TJP1Q07157 1748 aa18.29■□□□□ 0.52
USF1-209ENST00000529476 C5P01031 1676 aa18.29■□□□□ 0.52
USF1-209ENST00000529476 CALD1Q05682 793 aaKnown RBP18.29■□□□□ 0.52
USF1-209ENST00000529476 ZNF496Q96IT1 587 aaPredicted RBP18.29■□□□□ 0.52
USF1-209ENST00000529476 SGIP1Q9BQI5 828 aa18.29■□□□□ 0.52
USF1-209ENST00000529476 TSPYL4Q9UJ04 414 aa18.29■□□□□ 0.52
USF1-209ENST00000529476 CHL1O00533 1208 aa18.28■□□□□ 0.52
USF1-209ENST00000529476 ZNF853P0CG23 659 aa18.28■□□□□ 0.52
USF1-209ENST00000529476 ATP6V1AP38606 617 aa18.28■□□□□ 0.52
USF1-209ENST00000529476 ITPK1Q13572 414 aa18.28■□□□□ 0.52
USF1-209ENST00000529476 CFAP44Q96MT7 982 aa18.28■□□□□ 0.52
USF1-209ENST00000529476 ZNF521Q96K83 1311 aa18.27■□□□□ 0.52
USF1-209ENST00000529476 FMNL2Q96PY5 1086 aa18.27■□□□□ 0.52
USF1-209ENST00000529476 IFT57Q9NWB7 429 aa18.27■□□□□ 0.52
USF1-209ENST00000529476 BABAM1Q9NWV8 329 aa18.27■□□□□ 0.52
USF1-209ENST00000529476 CICQ96RK0 1608 aaPredicted RBP18.27■□□□□ 0.51
USF1-209ENST00000529476 COL5A3P25940 1745 aaPredicted RBP18.26■□□□□ 0.51
USF1-209ENST00000529476 GNAI1P63096 354 aa18.26■□□□□ 0.51
USF1-209ENST00000529476 HNRNPUQ00839 825 aaKnown RBP eCLIP18.26■□□□□ 0.51
USF1-209ENST00000529476 SLC15A2Q16348 729 aa18.26■□□□□ 0.51
USF1-209ENST00000529476 WDR63Q8IWG1 891 aa18.26■□□□□ 0.51
USF1-209ENST00000529476 HEG1Q9ULI3 1381 aa18.26■□□□□ 0.51
USF1-209ENST00000529476 IL16Q14005 1332 aa18.25■□□□□ 0.51
USF1-209ENST00000529476 EIF4A1P60842 406 aaKnown RBP18.25■□□□□ 0.51
USF1-209ENST00000529476 LINC00116Q8NCU8 138 aa18.25■□□□□ 0.51
USF1-209ENST00000529476 MTFR1LQ9H019 292 aa18.25■□□□□ 0.51
USF1-209ENST00000529476 MBIPQ9NS73 344 aa18.25■□□□□ 0.51
USF1-209ENST00000529476 STK32BQ9NY57 414 aa18.25■□□□□ 0.51
USF1-209ENST00000529476 C4BP0C0L5 1744 aa18.24■□□□□ 0.51
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms