RNA–Protein interactions for RNA: ENST00000521578.5

PTP4A3-204, Transcript of protein tyrosine phosphatase type IVA, member 3, humanhuman

APPRIS P1 TSL 5 BASIC

Gene PTP4A3, Length 1,717 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTP4A3-204ENST00000521578 SBF2Q86WG5 1849 aa28.65■■■□□ 2.18
PTP4A3-204ENST00000521578 B4GALNT3Q6L9W6 998 aa28.64■■■□□ 2.18
PTP4A3-204ENST00000521578 ADAMTS7Q9UKP4 1686 aa28.64■■■□□ 2.17
PTP4A3-204ENST00000521578 ERVV-2B6SEH9 535 aa28.63■■■□□ 2.17
PTP4A3-204ENST00000521578 CABP4P57796 275 aa28.63■■■□□ 2.17
PTP4A3-204ENST00000521578 CEMIPQ8WUJ3 1361 aa28.63■■■□□ 2.17
PTP4A3-204ENST00000521578 TRIM37O94972 964 aa28.63■■■□□ 2.17
PTP4A3-204ENST00000521578 PTF1AQ7RTS3 328 aa28.63■■■□□ 2.17
PTP4A3-204ENST00000521578 ITGB4P16144 1822 aa28.62■■■□□ 2.17
PTP4A3-204ENST00000521578 GOLGA2Q08379 1002 aa28.62■■■□□ 2.17
PTP4A3-204ENST00000521578 NFATC2IPQ8NCF5 419 aa28.62■■■□□ 2.17
PTP4A3-204ENST00000521578 TEFQ10587 303 aa28.61■■■□□ 2.17
PTP4A3-204ENST00000521578 SLC52A2Q9HAB3 445 aa28.6■■■□□ 2.17
PTP4A3-204ENST00000521578 TMOD3Q9NYL9 352 aa28.6■■■□□ 2.17
PTP4A3-204ENST00000521578 NCBP3Q53F19 620 aaKnown RBP28.6■■■□□ 2.17
PTP4A3-204ENST00000521578 NHSQ6T4R5 1651 aa28.59■■■□□ 2.17
PTP4A3-204ENST00000521578 CCDC27Q2M243 656 aa28.59■■■□□ 2.17
PTP4A3-204ENST00000521578 DUSP27Q5VZP5 1158 aa28.59■■■□□ 2.17
PTP4A3-204ENST00000521578 WWC1Q8IX03 1113 aa28.59■■■□□ 2.17
PTP4A3-204ENST00000521578 PIGBQ92521 554 aa28.59■■■□□ 2.17
PTP4A3-204ENST00000521578 TRMT2AQ8IZ69 625 aaKnown RBP28.57■■■□□ 2.16
PTP4A3-204ENST00000521578 BCL11BQ9C0K0 894 aaPredicted RBP28.57■■■□□ 2.16
PTP4A3-204ENST00000521578 SLFN5Q08AF3 891 aa28.57■■■□□ 2.16
PTP4A3-204ENST00000521578 MRC1P22897 1456 aa28.56■■■□□ 2.16
PTP4A3-204ENST00000521578 TAF7Q15545 349 aaPredicted RBP28.53■■■□□ 2.16
PTP4A3-204ENST00000521578 MIS18AQ9NYP9 233 aa28.53■■■□□ 2.16
PTP4A3-204ENST00000521578 SIPA1L3O60292 1781 aaPredicted RBP28.53■■■□□ 2.16
PTP4A3-204ENST00000521578 BTAF1O14981 1849 aa28.52■■■□□ 2.16
PTP4A3-204ENST00000521578 LAS1LQ9Y4W2 734 aaKnown RBP28.52■■■□□ 2.16
PTP4A3-204ENST00000521578 BTBD11A6QL63 1104 aa28.51■■■□□ 2.15
PTP4A3-204ENST00000521578 CCDC136Q96JN2 1154 aa28.51■■■□□ 2.15
PTP4A3-204ENST00000521578 ASAP1Q9ULH1 1129 aa28.51■■■□□ 2.15
PTP4A3-204ENST00000521578 SLC39A6Q13433 755 aa28.5■■■□□ 2.15
PTP4A3-204ENST00000521578 CALD1Q05682 793 aaKnown RBP28.49■■■□□ 2.15
PTP4A3-204ENST00000521578 APBA3O96018 575 aa28.48■■■□□ 2.15
PTP4A3-204ENST00000521578 ATG3Q9NT62 314 aa28.48■■■□□ 2.15
PTP4A3-204ENST00000521578 TNS1Q9HBL0 1735 aaKnown RBP28.47■■■□□ 2.15
PTP4A3-204ENST00000521578 E9PSI1 815 aa28.47■■■□□ 2.15
PTP4A3-204ENST00000521578 WDR63Q8IWG1 891 aa28.47■■■□□ 2.15
PTP4A3-204ENST00000521578 EXOC6Q8TAG9 804 aa28.46■■■□□ 2.15
PTP4A3-204ENST00000521578 SF3B2Q13435 895 aaKnown RBP28.46■■■□□ 2.15
PTP4A3-204ENST00000521578 TSPYL4Q9UJ04 414 aa28.46■■■□□ 2.15
PTP4A3-204ENST00000521578 KCNQ3O43525 872 aa28.45■■■□□ 2.14
PTP4A3-204ENST00000521578 CFAP44Q96MT7 982 aa28.45■■■□□ 2.14
PTP4A3-204ENST00000521578 ZNF790Q6PG37 636 aa28.44■■■□□ 2.14
PTP4A3-204ENST00000521578 IFT57Q9NWB7 429 aa28.44■■■□□ 2.14
PTP4A3-204ENST00000521578 RBM19Q9Y4C8 960 aaKnown RBP28.44■■■□□ 2.14
PTP4A3-204ENST00000521578 CHL1O00533 1208 aa28.43■■■□□ 2.14
PTP4A3-204ENST00000521578 GNAI1P63096 354 aa28.43■■■□□ 2.14
PTP4A3-204ENST00000521578 TTC5Q8N0Z6 440 aa28.43■■■□□ 2.14
PTP4A3-204ENST00000521578 UPF1Q92900 1129 aaKnown RBP eCLIP28.43■■■□□ 2.149e-7■■■■□ 25.3
PTP4A3-204ENST00000521578 PALLDQ8WX93 1383 aa28.43■■■□□ 2.14
PTP4A3-204ENST00000521578 SPINK5Q9NQ38 1064 aaPredicted RBP28.43■■■□□ 2.14
PTP4A3-204ENST00000521578 IL16Q14005 1332 aa28.42■■■□□ 2.14
PTP4A3-204ENST00000521578 PTCD1O75127 700 aaKnown RBP28.42■■■□□ 2.14
PTP4A3-204ENST00000521578 ZNF853P0CG23 659 aa28.42■■■□□ 2.14
PTP4A3-204ENST00000521578 SMARCC1Q92922 1105 aaPredicted RBP28.42■■■□□ 2.14
PTP4A3-204ENST00000521578 PAPPAQ13219 1627 aa28.42■■■□□ 2.14
PTP4A3-204ENST00000521578 CCDC125Q86Z20 511 aa28.4■■■□□ 2.14
PTP4A3-204ENST00000521578 RBM42Q9BTD8 480 aaKnown RBP28.4■■■□□ 2.14
PTP4A3-204ENST00000521578 MBIPQ9NS73 344 aa28.4■■■□□ 2.14
PTP4A3-204ENST00000521578 KDM3BQ7LBC6 1761 aa28.4■■■□□ 2.14
PTP4A3-204ENST00000521578 TSR2Q969E8 191 aaKnown RBP28.4■■■□□ 2.14
PTP4A3-204ENST00000521578 BABAM1Q9NWV8 329 aa28.4■■■□□ 2.14
PTP4A3-204ENST00000521578 EN1Q05925 392 aaPredicted RBP28.38■■■□□ 2.13
PTP4A3-204ENST00000521578 DEFB132Q7Z7B7 95 aa28.38■■■□□ 2.13
PTP4A3-204ENST00000521578 PLSCR1O15162 318 aa28.38■■■□□ 2.13
PTP4A3-204ENST00000521578 PLIN1O60240 522 aa28.38■■■□□ 2.13
PTP4A3-204ENST00000521578 ZNF496Q96IT1 587 aaPredicted RBP28.38■■■□□ 2.13
PTP4A3-204ENST00000521578 BAG6P46379 1132 aa28.37■■■□□ 2.13
PTP4A3-204ENST00000521578 KCPQ6ZWJ8 1503 aa28.36■■■□□ 2.13
PTP4A3-204ENST00000521578 UBR2Q8IWV8 1755 aa28.36■■■□□ 2.13
PTP4A3-204ENST00000521578 LOC102724428A0A0B4J2F2 783 aa28.35■■■□□ 2.13
PTP4A3-204ENST00000521578 KCNQ4P56696 695 aa28.35■■■□□ 2.13
PTP4A3-204ENST00000521578 SIK1P57059 783 aa28.35■■■□□ 2.13
PTP4A3-204ENST00000521578 FMNL2Q96PY5 1086 aa28.35■■■□□ 2.13
PTP4A3-204ENST00000521578 EIF4A1P60842 406 aaKnown RBP28.35■■■□□ 2.13
PTP4A3-204ENST00000521578 LY75O60449 1722 aa28.34■■■□□ 2.13
PTP4A3-204ENST00000521578 GOLGA6L2Q8N9W4 650 aaPredicted RBP28.34■■■□□ 2.13
PTP4A3-204ENST00000521578 SLC4A9Q96Q91 983 aa28.34■■■□□ 2.13
PTP4A3-204ENST00000521578 FANCIQ9NVI1 1328 aa28.34■■■□□ 2.13
PTP4A3-204ENST00000521578 EZH2Q15910 746 aaKnown RBP28.33■■■□□ 2.13
PTP4A3-204ENST00000521578 MYH16Q9H6N6 1097 aa28.33■■■□□ 2.13
PTP4A3-204ENST00000521578 TXNRD1Q16881 649 aa28.32■■■□□ 2.12
PTP4A3-204ENST00000521578 PROM2Q8N271 834 aa28.32■■■□□ 2.12
PTP4A3-204ENST00000521578 CCNL1Q9UK58 526 aaPredicted RBP28.32■■■□□ 2.12
PTP4A3-204ENST00000521578 ATP6V1AP38606 617 aa28.32■■■□□ 2.12
PTP4A3-204ENST00000521578 KRT24Q2M2I5 525 aa28.32■■■□□ 2.12
PTP4A3-204ENST00000521578 CAMKK2Q96RR4 588 aa28.32■■■□□ 2.12
PTP4A3-204ENST00000521578 CRBNQ96SW2 442 aa28.32■■■□□ 2.12
PTP4A3-204ENST00000521578 HEG1Q9ULI3 1381 aa28.3■■■□□ 2.12
PTP4A3-204ENST00000521578 LRRC4BQ9NT99 713 aa28.29■■■□□ 2.12
PTP4A3-204ENST00000521578 PRAMEF22A3QJZ6 481 aa28.29■■■□□ 2.12
PTP4A3-204ENST00000521578 RGPD3A6NKT7 1758 aaPredicted RBP28.28■■■□□ 2.12
PTP4A3-204ENST00000521578 RGPD4Q7Z3J3 1758 aa28.28■■■□□ 2.12
PTP4A3-204ENST00000521578 ELL2O00472 640 aaPredicted RBP28.27■■■□□ 2.12
PTP4A3-204ENST00000521578 ITPK1Q13572 414 aa28.27■■■□□ 2.12
PTP4A3-204ENST00000521578 SLC27A3Q5K4L6 730 aa28.27■■■□□ 2.12
PTP4A3-204ENST00000521578 VSIG10Q8N0Z9 540 aa28.27■■■□□ 2.12
PTP4A3-204ENST00000521578 SNRPA1P09661 255 aaKnown RBP28.26■■■□□ 2.12
Retrieved 100 of 20,778 RNA–protein pairs in 42.4 ms