RNA–Protein interactions for RNA: ENST00000519664.1

SYNPO-204, Transcript of synaptopodin, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene SYNPO, Length 4,571 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNPO-204ENST00000519664 NUP160Q12769 1436 aa13.92□□□□□ -0.18
SYNPO-204ENST00000519664 STK38Q15208 465 aa13.91□□□□□ -0.18
SYNPO-204ENST00000519664 CCDC57Q2TAC2 916 aa13.91□□□□□ -0.18
SYNPO-204ENST00000519664 TMX4Q9H1E5 349 aaPredicted RBP13.91□□□□□ -0.18
SYNPO-204ENST00000519664 CEP126Q9P2H0 1117 aa13.91□□□□□ -0.18
SYNPO-204ENST00000519664 ITSN2Q9NZM3 1697 aa13.91□□□□□ -0.18
SYNPO-204ENST00000519664 CCDC158Q5M9N0 1113 aa13.91□□□□□ -0.18
SYNPO-204ENST00000519664 TTC39AQ5SRH9 613 aa13.91□□□□□ -0.18
SYNPO-204ENST00000519664 RAB11FIP3O75154 756 aa13.91□□□□□ -0.18
SYNPO-204ENST00000519664 UHRF1BP1Q6BDS2 1440 aa13.91□□□□□ -0.18
SYNPO-204ENST00000519664 OTUD7AQ8TE49 926 aaPredicted RBP13.91□□□□□ -0.18
SYNPO-204ENST00000519664 SPATA32Q96LK8 384 aa13.9□□□□□ -0.18
SYNPO-204ENST00000519664 TFIP11Q9UBB9 837 aaKnown RBP13.9□□□□□ -0.18
SYNPO-204ENST00000519664 DTNBO60941 627 aa13.9□□□□□ -0.18
SYNPO-204ENST00000519664 MTHFSDQ2M296 383 aaKnown RBP13.9□□□□□ -0.18
SYNPO-204ENST00000519664 PDILTQ8N807 584 aa13.9□□□□□ -0.18
SYNPO-204ENST00000519664 GUCY1B3Q02153 619 aa13.9□□□□□ -0.18
SYNPO-204ENST00000519664 PIK3C2GO75747 1445 aa13.9□□□□□ -0.18
SYNPO-204ENST00000519664 CCDC192P0DO97 292 aa13.9□□□□□ -0.19
SYNPO-204ENST00000519664 SMC5Q8IY18 1101 aa13.9□□□□□ -0.19
SYNPO-204ENST00000519664 TBC1D2BQ9UPU7 963 aa13.9□□□□□ -0.19
SYNPO-204ENST00000519664 MAP3K2Q9Y2U5 619 aa13.9□□□□□ -0.19
SYNPO-204ENST00000519664 SMC2O95347 1197 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 CHRNA2Q15822 529 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 TRIM35Q9UPQ4 493 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 KIF21AQ7Z4S6 1674 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 XRCC6P12956 609 aaKnown RBP eCLIP13.89□□□□□ -0.19
SYNPO-204ENST00000519664 PDE1AP54750 535 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 KIF6Q6ZMV9 814 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 PTPRCP08575 1304 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 SLC39A6Q13433 755 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 SAMD1Q6SPF0 538 aaPredicted RBP13.89□□□□□ -0.19
SYNPO-204ENST00000519664 FILIP1Q7Z7B0 1213 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 ANKRD44Q8N8A2 993 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 KCNH5Q8NCM2 988 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 DBF4Q9UBU7 674 aaPredicted RBP13.89□□□□□ -0.19
SYNPO-204ENST00000519664 KDM2BQ8NHM5 1336 aa13.89□□□□□ -0.19
SYNPO-204ENST00000519664 ARHGEF12Q9NZN5 1544 aa13.88□□□□□ -0.19
SYNPO-204ENST00000519664 IDH1O75874 414 aaKnown RBP13.88□□□□□ -0.19
SYNPO-204ENST00000519664 ARHGAP45Q92619 1136 aa13.88□□□□□ -0.19
SYNPO-204ENST00000519664 PCMTD1Q96MG8 357 aaPredicted RBP13.88□□□□□ -0.19
SYNPO-204ENST00000519664 CHPF2Q9P2E5 772 aa13.88□□□□□ -0.19
SYNPO-204ENST00000519664 G2E3Q7L622 706 aa13.88□□□□□ -0.19
SYNPO-204ENST00000519664 ZBTB3Q9H5J0 574 aa13.88□□□□□ -0.19
SYNPO-204ENST00000519664 A0A087WZG4 1122 aa13.87□□□□□ -0.19
SYNPO-204ENST00000519664 TTLL5Q6EMB2 1281 aa13.87□□□□□ -0.19
SYNPO-204ENST00000519664 LRRC59Q96AG4 307 aaKnown RBP13.87□□□□□ -0.19
SYNPO-204ENST00000519664 TSR1Q2NL82 804 aaKnown RBP13.87□□□□□ -0.19
SYNPO-204ENST00000519664 UBE3BQ7Z3V4 1068 aa13.87□□□□□ -0.19
SYNPO-204ENST00000519664 TMX3Q96JJ7 454 aa13.87□□□□□ -0.19
SYNPO-204ENST00000519664 SNRKQ9NRH2 765 aa13.87□□□□□ -0.19
SYNPO-204ENST00000519664 PPIP5K1Q6PFW1 1433 aa13.87□□□□□ -0.19
SYNPO-204ENST00000519664 LARP1Q6PKG0 1096 aaKnown RBP13.87□□□□□ -0.19
SYNPO-204ENST00000519664 CKAP2LQ8IYA6 745 aa13.87□□□□□ -0.19
SYNPO-204ENST00000519664 ANKRD1Q15327 319 aa13.86□□□□□ -0.19
SYNPO-204ENST00000519664 RHPN1Q8TCX5 695 aa13.86□□□□□ -0.19
SYNPO-204ENST00000519664 ZBTB7BO15156 539 aaPredicted RBP13.86□□□□□ -0.19
SYNPO-204ENST00000519664 CCDC82Q8N4S0 544 aa13.86□□□□□ -0.19
SYNPO-204ENST00000519664 ZGPATQ8N5A5 531 aaKnown RBP13.86□□□□□ -0.19
SYNPO-204ENST00000519664 USP25Q9UHP3 1055 aa13.86□□□□□ -0.19
SYNPO-204ENST00000519664 BRPF1P55201 1214 aaPredicted RBP13.86□□□□□ -0.19
SYNPO-204ENST00000519664 ZSCAN30Q86W11 494 aa13.86□□□□□ -0.19
SYNPO-204ENST00000519664 PA2G4Q9UQ80 394 aaKnown RBP13.86□□□□□ -0.19
SYNPO-204ENST00000519664 NECAB1Q8N987 351 aa13.86□□□□□ -0.19
SYNPO-204ENST00000519664 NUP62CLQ9H1M0 184 aa13.86□□□□□ -0.19
SYNPO-204ENST00000519664 NUTM2BA6NNL0 878 aaPredicted RBP13.85□□□□□ -0.19
SYNPO-204ENST00000519664 NUTM2EB1AL46 878 aaPredicted RBP13.85□□□□□ -0.19
SYNPO-204ENST00000519664 LETM1O95202 739 aaPredicted RBP13.85□□□□□ -0.19
SYNPO-204ENST00000519664 NUTM2AQ8IVF1 878 aaPredicted RBP13.85□□□□□ -0.19
SYNPO-204ENST00000519664 NUP133Q8WUM0 1156 aa13.85□□□□□ -0.19
SYNPO-204ENST00000519664 ECHDC1Q9NTX5 307 aa13.85□□□□□ -0.19
SYNPO-204ENST00000519664 LIMCH1Q9UPQ0 1083 aa13.85□□□□□ -0.19
SYNPO-204ENST00000519664 TPM1P09493 284 aa13.85□□□□□ -0.19
SYNPO-204ENST00000519664 PIBF1Q8WXW3 757 aa13.85□□□□□ -0.19
SYNPO-204ENST00000519664 PLEKHM2Q8IWE5 1019 aa13.85□□□□□ -0.19
SYNPO-204ENST00000519664 NOC3LQ8WTT2 800 aaKnown RBP13.85□□□□□ -0.19
SYNPO-204ENST00000519664 EYA1Q99502 592 aa13.85□□□□□ -0.19
SYNPO-204ENST00000519664 NOL10Q9BSC4 688 aaKnown RBP13.85□□□□□ -0.19
SYNPO-204ENST00000519664 CCT2P78371 535 aaKnown RBP13.85□□□□□ -0.19
SYNPO-204ENST00000519664 NCBP3Q53F19 620 aaKnown RBP13.85□□□□□ -0.19
SYNPO-204ENST00000519664 ZSCAN31Q96LW9 406 aaPredicted RBP13.85□□□□□ -0.19
SYNPO-204ENST00000519664 MPHOSPH8Q99549 860 aa13.85□□□□□ -0.19
SYNPO-204ENST00000519664 NAT10Q9H0A0 1025 aaKnown RBP13.85□□□□□ -0.19
SYNPO-204ENST00000519664 EIF4G3O43432 1585 aaKnown RBP13.84□□□□□ -0.19
SYNPO-204ENST00000519664 CEP85Q6P2H3 762 aa13.84□□□□□ -0.19
SYNPO-204ENST00000519664 RAB11FIP4Q86YS3 637 aa13.84□□□□□ -0.19
SYNPO-204ENST00000519664 DCTPP1Q9H773 170 aa13.84□□□□□ -0.19
SYNPO-204ENST00000519664 ABCC10Q5T3U5 1492 aa13.84□□□□□ -0.19
SYNPO-204ENST00000519664 PHAXQ9H814 394 aaKnown RBP13.84□□□□□ -0.19
SYNPO-204ENST00000519664 SHANK2Q9UPX8 1470 aa13.84□□□□□ -0.19
SYNPO-204ENST00000519664 FAM177A1Q8N128 213 aaPredicted RBP13.84□□□□□ -0.19
SYNPO-204ENST00000519664 SAMD9Q5K651 1589 aa13.84□□□□□ -0.19
SYNPO-204ENST00000519664 LRRC2Q9BYS8 371 aa13.83□□□□□ -0.19
SYNPO-204ENST00000519664 PPP6R1Q9UPN7 881 aa13.83□□□□□ -0.19
SYNPO-204ENST00000519664 ADGRL2O95490 1459 aa13.83□□□□□ -0.2
SYNPO-204ENST00000519664 GPTP24298 496 aa13.83□□□□□ -0.2
SYNPO-204ENST00000519664 WDR7Q9Y4E6 1490 aa13.83□□□□□ -0.2
SYNPO-204ENST00000519664 BICDL1Q6ZP65 573 aa13.83□□□□□ -0.2
SYNPO-204ENST00000519664 ZNF396Q96N95 335 aaPredicted RBP13.83□□□□□ -0.2
SYNPO-204ENST00000519664 ABCF2Q9UG63 623 aa13.83□□□□□ -0.2
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms