RNA–Protein interactions for RNA: ENST00000513960.5

VCAN-210, Transcript of versican, humanhuman

TSL 1 (best)

Gene VCAN, Length 3,973 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VCAN-210ENST00000513960 DYNC1I1O14576 645 aa11.72□□□□□ -0.53
VCAN-210ENST00000513960 SMARCA5O60264 1052 aaPredicted RBP11.72□□□□□ -0.53
VCAN-210ENST00000513960 MTERF4Q7Z6M4 381 aaKnown RBP11.72□□□□□ -0.53
VCAN-210ENST00000513960 TSPY26PQ9H489 355 aa11.72□□□□□ -0.53
VCAN-210ENST00000513960 OVOS2A0A0J9YW53 1432 aa11.72□□□□□ -0.53
VCAN-210ENST00000513960 OVOS2Q6IE36 1432 aa11.72□□□□□ -0.53
VCAN-210ENST00000513960 LMBRD1Q9NUN5 540 aa11.72□□□□□ -0.53
VCAN-210ENST00000513960 TBX22Q9Y458 520 aa11.72□□□□□ -0.53
VCAN-210ENST00000513960 UBR1Q8IWV7 1749 aa11.71□□□□□ -0.53
VCAN-210ENST00000513960 CHAF1AQ13111 956 aaPredicted RBP11.71□□□□□ -0.53
VCAN-210ENST00000513960 INTS3Q68E01 1043 aaKnown RBP11.71□□□□□ -0.53
VCAN-210ENST00000513960 THEMISQ8N1K5 641 aaPredicted RBP11.71□□□□□ -0.53
VCAN-210ENST00000513960 TSPYL4Q9UJ04 414 aa11.71□□□□□ -0.53
VCAN-210ENST00000513960 AKAP12Q02952 1782 aa11.71□□□□□ -0.53
VCAN-210ENST00000513960 MAP3K19Q56UN5 1328 aa11.71□□□□□ -0.53
VCAN-210ENST00000513960 KIF24Q5T7B8 1368 aa11.71□□□□□ -0.53
VCAN-210ENST00000513960 SYAP1Q96A49 352 aaPredicted RBP11.71□□□□□ -0.53
VCAN-210ENST00000513960 SLC4A2P04920 1241 aa11.71□□□□□ -0.54
VCAN-210ENST00000513960 USP25Q9UHP3 1055 aa11.71□□□□□ -0.54
VCAN-210ENST00000513960 RPAP2Q8IXW5 612 aaPredicted RBP11.7□□□□□ -0.54
VCAN-210ENST00000513960 MIS18AQ9NYP9 233 aa11.7□□□□□ -0.54
VCAN-210ENST00000513960 KIAA0232Q92628 1395 aa11.7□□□□□ -0.54
VCAN-210ENST00000513960 NLRP6P59044 892 aa11.7□□□□□ -0.54
VCAN-210ENST00000513960 KIF2CQ99661 725 aa11.7□□□□□ -0.54
VCAN-210ENST00000513960 TMEM63CQ9P1W3 806 aa11.7□□□□□ -0.54
VCAN-210ENST00000513960 PTPRCP08575 1304 aa11.7□□□□□ -0.54
VCAN-210ENST00000513960 KIF13AQ9H1H9 1805 aa11.7□□□□□ -0.54
VCAN-210ENST00000513960 DLG5Q8TDM6 1919 aa11.7□□□□□ -0.54
VCAN-210ENST00000513960 ZNF445P59923 1031 aa11.7□□□□□ -0.54
VCAN-210ENST00000513960 DCTPP1Q9H773 170 aa11.7□□□□□ -0.54
VCAN-210ENST00000513960 TTC12Q9H892 705 aaPredicted RBP11.7□□□□□ -0.54
VCAN-210ENST00000513960 FLT4P35916 1363 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 TRIM6-TRIM34B2RNG4 842 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 SLC4A10Q6U841 1118 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 LRSAM1Q6UWE0 723 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 USP31Q70CQ4 1352 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 PPP4R3BQ5MIZ7 849 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 GPT2Q8TD30 523 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 NSFL1CQ9UNZ2 370 aaKnown RBP11.69□□□□□ -0.54
VCAN-210ENST00000513960 CHMP3Q9Y3E7 222 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP11.69□□□□□ -0.54
VCAN-210ENST00000513960 MTHFSDQ2M296 383 aaKnown RBP11.69□□□□□ -0.54
VCAN-210ENST00000513960 ANKRD44Q8N8A2 993 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 SPC24Q8NBT2 197 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 SIPA1L2Q9P2F8 1722 aaPredicted RBP11.69□□□□□ -0.54
VCAN-210ENST00000513960 FOXO3O43524 673 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 DDIT3P35638 169 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 C14orf37Q86TY3 774 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 RILPL2Q969X0 211 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 STK31Q9BXU1 1019 aa11.69□□□□□ -0.54
VCAN-210ENST00000513960 PTPRUQ92729 1446 aa11.68□□□□□ -0.54
VCAN-210ENST00000513960 ARHGEF10O15013 1369 aa11.68□□□□□ -0.54
VCAN-210ENST00000513960 ZNF771Q7L3S4 317 aaPredicted RBP11.68□□□□□ -0.54
VCAN-210ENST00000513960 OTUD7AQ8TE49 926 aaPredicted RBP11.68□□□□□ -0.54
VCAN-210ENST00000513960 SBNO1A3KN83 1393 aa11.68□□□□□ -0.54
VCAN-210ENST00000513960 HMMRO75330 724 aa11.68□□□□□ -0.54
VCAN-210ENST00000513960 DRC7Q8IY82 874 aa11.68□□□□□ -0.54
VCAN-210ENST00000513960 ANO2Q9NQ90 1003 aa11.68□□□□□ -0.54
VCAN-210ENST00000513960 ZNF500O60304 480 aaPredicted RBP11.67□□□□□ -0.54
VCAN-210ENST00000513960 MBD3O95983 291 aa11.67□□□□□ -0.54
VCAN-210ENST00000513960 MAPK8IP2Q13387 824 aaPredicted RBP11.67□□□□□ -0.54
VCAN-210ENST00000513960 NUTM2GQ5VZR2 741 aa11.67□□□□□ -0.54
VCAN-210ENST00000513960 SMAP1Q8IYB5 467 aaPredicted RBP11.67□□□□□ -0.54
VCAN-210ENST00000513960 REC8O95072 547 aa11.67□□□□□ -0.54
VCAN-210ENST00000513960 PLEKHM2Q8IWE5 1019 aa11.67□□□□□ -0.54
VCAN-210ENST00000513960 EYA1Q99502 592 aa11.67□□□□□ -0.54
VCAN-210ENST00000513960 TSHZ3Q63HK5 1081 aa11.67□□□□□ -0.54
VCAN-210ENST00000513960 MEIS3Q99687 375 aa11.67□□□□□ -0.54
VCAN-210ENST00000513960 CWC22Q9HCG8 908 aaKnown RBP11.67□□□□□ -0.54
VCAN-210ENST00000513960 PRDM4Q9UKN5 801 aa11.67□□□□□ -0.54
VCAN-210ENST00000513960 NRKQ7Z2Y5 1582 aa11.66□□□□□ -0.54
VCAN-210ENST00000513960 CEP85Q6P2H3 762 aa11.66□□□□□ -0.54
VCAN-210ENST00000513960 CCDC94Q9BW85 323 aaPredicted RBP11.66□□□□□ -0.54
VCAN-210ENST00000513960 MCCP23508 829 aa11.66□□□□□ -0.54
VCAN-210ENST00000513960 HS1BP3Q53T59 392 aa11.66□□□□□ -0.54
VCAN-210ENST00000513960 DTNBO60941 627 aa11.66□□□□□ -0.54
VCAN-210ENST00000513960 GSPT1P15170 499 aaKnown RBP11.66□□□□□ -0.54
VCAN-210ENST00000513960 LTV1Q96GA3 475 aaPredicted RBP11.66□□□□□ -0.54
VCAN-210ENST00000513960 UPF3BQ9BZI7 483 aaKnown RBP11.66□□□□□ -0.54
VCAN-210ENST00000513960 KIF3AQ9Y496 699 aa11.66□□□□□ -0.54
VCAN-210ENST00000513960 MSH6P52701 1360 aa11.65□□□□□ -0.54
VCAN-210ENST00000513960 PHF14O94880 888 aa11.65□□□□□ -0.54
VCAN-210ENST00000513960 CDK11BP21127 795 aaKnown RBP11.65□□□□□ -0.54
VCAN-210ENST00000513960 CCT4P50991 539 aaKnown RBP11.65□□□□□ -0.54
VCAN-210ENST00000513960 ABTB2Q8N961 1025 aa11.65□□□□□ -0.54
VCAN-210ENST00000513960 TTC22Q5TAA0 569 aa11.65□□□□□ -0.54
VCAN-210ENST00000513960 LARP6Q9BRS8 491 aaKnown RBP11.65□□□□□ -0.55
VCAN-210ENST00000513960 F6X3S4 739 aa11.64□□□□□ -0.55
VCAN-210ENST00000513960 TERF1P54274 439 aa11.64□□□□□ -0.55
VCAN-210ENST00000513960 CRB1P82279 1406 aa11.64□□□□□ -0.55
VCAN-210ENST00000513960 SSH2Q76I76 1423 aa11.64□□□□□ -0.55
VCAN-210ENST00000513960 GNAT3A8MTJ3 354 aa11.64□□□□□ -0.55
VCAN-210ENST00000513960 FIBPO43427 364 aa11.64□□□□□ -0.55
VCAN-210ENST00000513960 PDCL2Q8N4E4 241 aa11.64□□□□□ -0.55
VCAN-210ENST00000513960 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.64□□□□□ -0.55
VCAN-210ENST00000513960 IGSF1Q8N6C5 1336 aa11.64□□□□□ -0.55
VCAN-210ENST00000513960 RTL1A6NKG5 1358 aa11.64□□□□□ -0.55
VCAN-210ENST00000513960 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP11.64□□□□□ -0.55
VCAN-210ENST00000513960 HCLS1P14317 486 aaPredicted RBP11.64□□□□□ -0.55
VCAN-210ENST00000513960 SDSP20132 328 aa11.64□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms