RNA–Protein interactions for RNA: ENST00000512632.5

LIMCH1-215, Transcript of LIM and calponin homology domains 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMCH1, Length 4,792 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-215ENST00000512632 OSBPL3Q9H4L5 887 aa11.28□□□□□ -0.6
LIMCH1-215ENST00000512632 LRRFIP2Q9Y608 721 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-215ENST00000512632 IBTKQ9P2D0 1353 aaPredicted RBP11.28□□□□□ -0.6
LIMCH1-215ENST00000512632 CRB1P82279 1406 aa11.28□□□□□ -0.6
LIMCH1-215ENST00000512632 DLG5Q8TDM6 1919 aa11.28□□□□□ -0.6
LIMCH1-215ENST00000512632 NGDNQ8NEJ9 315 aaKnown RBP11.28□□□□□ -0.6
LIMCH1-215ENST00000512632 CHMLP26374 656 aa11.27□□□□□ -0.6
LIMCH1-215ENST00000512632 LARP6Q9BRS8 491 aaKnown RBP11.27□□□□□ -0.6
LIMCH1-215ENST00000512632 ZBTB7CA1YPR0 619 aa11.27□□□□□ -0.61
LIMCH1-215ENST00000512632 DTNBO60941 627 aa11.27□□□□□ -0.61
LIMCH1-215ENST00000512632 MCCP23508 829 aa11.27□□□□□ -0.61
LIMCH1-215ENST00000512632 XPCQ01831 940 aaPredicted RBP11.27□□□□□ -0.61
LIMCH1-215ENST00000512632 NUTM1Q86Y26 1132 aa11.27□□□□□ -0.61
LIMCH1-215ENST00000512632 MPNDQ8N594 471 aa11.27□□□□□ -0.61
LIMCH1-215ENST00000512632 PPP6R1Q9UPN7 881 aa11.27□□□□□ -0.61
LIMCH1-215ENST00000512632 GNAI3P08754 354 aa11.26□□□□□ -0.61
LIMCH1-215ENST00000512632 R3HCC1Q9Y3T6 440 aaKnown RBP11.26□□□□□ -0.61
LIMCH1-215ENST00000512632 ATP8B2P98198 1209 aa11.26□□□□□ -0.61
LIMCH1-215ENST00000512632 IL25Q9H293 177 aa11.26□□□□□ -0.61
LIMCH1-215ENST00000512632 PLEKHG3A1L390 1219 aa11.26□□□□□ -0.61
LIMCH1-215ENST00000512632 LRSAM1Q6UWE0 723 aa11.25□□□□□ -0.61
LIMCH1-215ENST00000512632 RRP9O43818 475 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-215ENST00000512632 CCDC30Q5VVM6 783 aa11.25□□□□□ -0.61
LIMCH1-215ENST00000512632 OFD1O75665 1012 aa11.25□□□□□ -0.61
LIMCH1-215ENST00000512632 BRD1O95696 1058 aa11.25□□□□□ -0.61
LIMCH1-215ENST00000512632 LTKP29376 864 aa11.25□□□□□ -0.61
LIMCH1-215ENST00000512632 VSIG10Q8N0Z9 540 aa11.25□□□□□ -0.61
LIMCH1-215ENST00000512632 SIRT1Q96EB6 747 aa11.25□□□□□ -0.61
LIMCH1-215ENST00000512632 NLRP6P59044 892 aa11.25□□□□□ -0.61
LIMCH1-215ENST00000512632 RBM10P98175 930 aaKnown RBP11.25□□□□□ -0.61
LIMCH1-215ENST00000512632 SURF6O75683 361 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-215ENST00000512632 EIF2S2P20042 333 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-215ENST00000512632 USP44Q9H0E7 712 aa11.24□□□□□ -0.61
LIMCH1-215ENST00000512632 GADD45BO75293 160 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-215ENST00000512632 PHAXQ9H814 394 aaKnown RBP11.24□□□□□ -0.61
LIMCH1-215ENST00000512632 SALL3Q9BXA9 1300 aa11.24□□□□□ -0.61
LIMCH1-215ENST00000512632 REREQ9P2R6 1566 aa11.24□□□□□ -0.61
LIMCH1-215ENST00000512632 UBTFL1P0CB47 393 aaPredicted RBP11.24□□□□□ -0.61
LIMCH1-215ENST00000512632 MCM2P49736 904 aa11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 GLIPR1L2Q4G1C9 344 aa11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 PDLIM2Q96JY6 352 aa11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 PLEKHG5O94827 1062 aa11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 TPM2P07951 284 aa11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 CUL4AQ13619 759 aa11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 USHBP1Q8N6Y0 703 aa11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 IL17REQ8NFR9 667 aa11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 MBD3O95983 291 aa11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 C14orf37Q86TY3 774 aa11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 EIF2AK3Q9NZJ5 1116 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 NOL7Q9UMY1 257 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 PTMAP06454 111 aaKnown RBP11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 CEBPAP49715 358 aaPredicted RBP11.23□□□□□ -0.61
LIMCH1-215ENST00000512632 USP6P35125 1406 aa11.22□□□□□ -0.61
LIMCH1-215ENST00000512632 GNAT3A8MTJ3 354 aa11.22□□□□□ -0.61
LIMCH1-215ENST00000512632 OVOS2A0A0J9YW53 1432 aa11.22□□□□□ -0.61
LIMCH1-215ENST00000512632 OVOS2Q6IE36 1432 aa11.22□□□□□ -0.61
LIMCH1-215ENST00000512632 HDGFL1Q5TGJ6 251 aa11.22□□□□□ -0.61
LIMCH1-215ENST00000512632 PPP1R42Q7Z4L9 355 aa11.22□□□□□ -0.61
LIMCH1-215ENST00000512632 PDZRN4Q6ZMN7 1036 aaPredicted RBP11.22□□□□□ -0.61
LIMCH1-215ENST00000512632 RIMBP3CA6NJZ7 1639 aa11.22□□□□□ -0.61
LIMCH1-215ENST00000512632 RIMBP3BA6NNM3 1639 aa11.22□□□□□ -0.61
LIMCH1-215ENST00000512632 RIMBP3Q9UFD9 1639 aa11.22□□□□□ -0.61
LIMCH1-215ENST00000512632 ANXA1P04083 346 aa11.21□□□□□ -0.61
LIMCH1-215ENST00000512632 AMOTL2Q9Y2J4 779 aa11.21□□□□□ -0.61
LIMCH1-215ENST00000512632 USP48Q86UV5 1035 aa11.21□□□□□ -0.61
LIMCH1-215ENST00000512632 CPA1P15085 419 aa11.21□□□□□ -0.62
LIMCH1-215ENST00000512632 FAM13BQ9NYF5 915 aa11.21□□□□□ -0.62
LIMCH1-215ENST00000512632 SRGAP3O43295 1099 aa11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 ANAPC15P60006 121 aa11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 STAP2Q9UGK3 403 aa11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 ZKSCAN5Q9Y2L8 839 aa11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 DDX54Q8TDD1 881 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 TSPY26PQ9H489 355 aa11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 FLT4P35916 1363 aa11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 TMEM2Q9UHN6 1383 aa11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 TNRQ92752 1358 aa11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 TAF7Q15545 349 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 INTS4Q96HW7 963 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 SPG7Q9UQ90 795 aa11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 NBPF7P0C2Y1 421 aaPredicted RBP11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 HS1BP3Q53T59 392 aa11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 CWC27Q6UX04 472 aaKnown RBP11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 SRCIN1Q9C0H9 1055 aa11.2□□□□□ -0.62
LIMCH1-215ENST00000512632 IGSF1Q8N6C5 1336 aa11.19□□□□□ -0.62
LIMCH1-215ENST00000512632 SPATA31D1Q6ZQQ2 1576 aa11.19□□□□□ -0.62
LIMCH1-215ENST00000512632 ARHGEF10O15013 1369 aa11.19□□□□□ -0.62
LIMCH1-215ENST00000512632 RHPN1Q8TCX5 695 aa11.19□□□□□ -0.62
LIMCH1-215ENST00000512632 ARID3AQ99856 593 aa11.19□□□□□ -0.62
LIMCH1-215ENST00000512632 USP31Q70CQ4 1352 aa11.19□□□□□ -0.62
LIMCH1-215ENST00000512632 RASEFQ8IZ41 740 aa11.19□□□□□ -0.62
LIMCH1-215ENST00000512632 TECPR2O15040 1411 aa11.19□□□□□ -0.62
LIMCH1-215ENST00000512632 NRXN3Q9Y4C0 1643 aa11.19□□□□□ -0.62
LIMCH1-215ENST00000512632 ZNF830Q96NB3 372 aaPredicted RBP11.19□□□□□ -0.62
LIMCH1-215ENST00000512632 SBNO1A3KN83 1393 aa11.18□□□□□ -0.62
LIMCH1-215ENST00000512632 HSPA4P34932 840 aa11.18□□□□□ -0.62
LIMCH1-215ENST00000512632 OS9Q13438 667 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-215ENST00000512632 CNPY2Q9Y2B0 182 aa11.18□□□□□ -0.62
LIMCH1-215ENST00000512632 SOS1Q07889 1333 aaPredicted RBP11.18□□□□□ -0.62
LIMCH1-215ENST00000512632 TSPOAP1O95153 1857 aa11.18□□□□□ -0.62
LIMCH1-215ENST00000512632 PLCB2Q00722 1185 aa11.18□□□□□ -0.62
Retrieved 100 of 20,778 RNA–protein pairs in 45.7 ms