RNA–Protein interactions for RNA: ENST00000509638.5

LIMCH1-211, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 1,570 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-211ENST00000509638 SALL2Q9Y467 1007 aaPredicted RBP38.87■■■■□ 3.81
LIMCH1-211ENST00000509638 RGPD3A6NKT7 1758 aaPredicted RBP38.86■■■■□ 3.81
LIMCH1-211ENST00000509638 RGPD4Q7Z3J3 1758 aa38.86■■■■□ 3.81
LIMCH1-211ENST00000509638 CCDC27Q2M243 656 aa38.83■■■■□ 3.81
LIMCH1-211ENST00000509638 UPF1Q92900 1129 aaKnown RBP eCLIP38.82■■■■□ 3.81
LIMCH1-211ENST00000509638 SF3B2Q13435 895 aaKnown RBP38.82■■■■□ 3.8
LIMCH1-211ENST00000509638 NCBP3Q53F19 620 aaKnown RBP38.82■■■■□ 3.8
LIMCH1-211ENST00000509638 KDM3BQ7LBC6 1761 aa38.81■■■■□ 3.8
LIMCH1-211ENST00000509638 LY75O60449 1722 aa38.81■■■■□ 3.8
LIMCH1-211ENST00000509638 UBR2Q8IWV8 1755 aa38.8■■■■□ 3.8
LIMCH1-211ENST00000509638 APBA3O96018 575 aa38.8■■■■□ 3.8
LIMCH1-211ENST00000509638 WWC1Q8IX03 1113 aa38.79■■■■□ 3.8
LIMCH1-211ENST00000509638 CCDC125Q86Z20 511 aa38.78■■■■□ 3.8
LIMCH1-211ENST00000509638 NGEFQ8N5V2 710 aa38.78■■■■□ 3.8
LIMCH1-211ENST00000509638 ASAP1Q9ULH1 1129 aa38.77■■■■□ 3.8
LIMCH1-211ENST00000509638 PALLDQ8WX93 1383 aa38.76■■■■□ 3.8
LIMCH1-211ENST00000509638 TAF7Q15545 349 aaPredicted RBP38.74■■■■□ 3.79
LIMCH1-211ENST00000509638 ATG3Q9NT62 314 aa38.74■■■■□ 3.79
LIMCH1-211ENST00000509638 BTBD11A6QL63 1104 aa38.74■■■■□ 3.79
LIMCH1-211ENST00000509638 HNRNPUQ00839 825 aaKnown RBP eCLIP38.74■■■■□ 3.79
LIMCH1-211ENST00000509638 CALD1Q05682 793 aaKnown RBP38.73■■■■□ 3.79
LIMCH1-211ENST00000509638 KCPQ6ZWJ8 1503 aa38.73■■■■□ 3.79
LIMCH1-211ENST00000509638 SLC39A6Q13433 755 aa38.72■■■■□ 3.79
LIMCH1-211ENST00000509638 BAG6P46379 1132 aa38.71■■■■□ 3.79
LIMCH1-211ENST00000509638 SMARCC1Q92922 1105 aaPredicted RBP38.71■■■■□ 3.79
LIMCH1-211ENST00000509638 RREB1Q92766 1687 aa38.7■■■■□ 3.79
LIMCH1-211ENST00000509638 MIS18AQ9NYP9 233 aa38.7■■■■□ 3.79
LIMCH1-211ENST00000509638 DEFB132Q7Z7B7 95 aa38.69■■■■□ 3.78
LIMCH1-211ENST00000509638 ZNF521Q96K83 1311 aa38.68■■■■□ 3.78
LIMCH1-211ENST00000509638 PLSCR1O15162 318 aa38.68■■■■□ 3.78
LIMCH1-211ENST00000509638 LAS1LQ9Y4W2 734 aaKnown RBP38.68■■■■□ 3.78
LIMCH1-211ENST00000509638 ZNF790Q6PG37 636 aa38.67■■■■□ 3.78
LIMCH1-211ENST00000509638 TTC5Q8N0Z6 440 aa38.67■■■■□ 3.78
LIMCH1-211ENST00000509638 EN1Q05925 392 aaPredicted RBP38.66■■■■□ 3.78
LIMCH1-211ENST00000509638 TSPYL4Q9UJ04 414 aa38.65■■■■□ 3.78
LIMCH1-211ENST00000509638 ZNF831Q5JPB2 1677 aa38.65■■■■□ 3.78
LIMCH1-211ENST00000509638 IFT57Q9NWB7 429 aa38.65■■■■□ 3.78
LIMCH1-211ENST00000509638 WDR63Q8IWG1 891 aa38.64■■■■□ 3.78
LIMCH1-211ENST00000509638 CFAP44Q96MT7 982 aa38.64■■■■□ 3.78
LIMCH1-211ENST00000509638 CICQ96RK0 1608 aaPredicted RBP38.64■■■■□ 3.78
LIMCH1-211ENST00000509638 KCNQ3O43525 872 aa38.63■■■■□ 3.77
LIMCH1-211ENST00000509638 PTCD1O75127 700 aaKnown RBP38.63■■■■□ 3.77
LIMCH1-211ENST00000509638 TJP1Q07157 1748 aa38.63■■■■□ 3.77
LIMCH1-211ENST00000509638 C5P01031 1676 aa38.62■■■■□ 3.77
LIMCH1-211ENST00000509638 NUP188Q5SRE5 1749 aa38.62■■■■□ 3.77
LIMCH1-211ENST00000509638 TAF1LQ8IZX4 1826 aa38.62■■■■□ 3.77
LIMCH1-211ENST00000509638 IL16Q14005 1332 aa38.62■■■■□ 3.77
LIMCH1-211ENST00000509638 CHL1O00533 1208 aa38.61■■■■□ 3.77
LIMCH1-211ENST00000509638 CAMKK2Q96RR4 588 aa38.61■■■■□ 3.77
LIMCH1-211ENST00000509638 BABAM1Q9NWV8 329 aa38.61■■■■□ 3.77
LIMCH1-211ENST00000509638 GNAI1P63096 354 aa38.61■■■■□ 3.77
LIMCH1-211ENST00000509638 EZH2Q15910 746 aaKnown RBP38.61■■■■□ 3.77
LIMCH1-211ENST00000509638 RBM42Q9BTD8 480 aaKnown RBP38.61■■■■□ 3.77
LIMCH1-211ENST00000509638 LOC102724428A0A0B4J2F2 783 aa38.6■■■■□ 3.77
LIMCH1-211ENST00000509638 ZNF853P0CG23 659 aa38.6■■■■□ 3.77
LIMCH1-211ENST00000509638 SIK1P57059 783 aa38.6■■■■□ 3.77
LIMCH1-211ENST00000509638 TXNRD1Q16881 649 aa38.59■■■■□ 3.77
LIMCH1-211ENST00000509638 ZNF496Q96IT1 587 aaPredicted RBP38.58■■■■□ 3.77
LIMCH1-211ENST00000509638 CCNL1Q9UK58 526 aaPredicted RBP38.58■■■■□ 3.77
LIMCH1-211ENST00000509638 COL5A3P25940 1745 aaPredicted RBP38.58■■■■□ 3.77
LIMCH1-211ENST00000509638 MBIPQ9NS73 344 aa38.57■■■■□ 3.77
LIMCH1-211ENST00000509638 SOCS7O14512 581 aa38.57■■■■□ 3.76
LIMCH1-211ENST00000509638 KCNQ4P56696 695 aa38.56■■■■□ 3.76
LIMCH1-211ENST00000509638 PROM2Q8N271 834 aa38.56■■■■□ 3.76
LIMCH1-211ENST00000509638 FMNL2Q96PY5 1086 aa38.56■■■■□ 3.76
LIMCH1-211ENST00000509638 SLC4A9Q96Q91 983 aa38.56■■■■□ 3.76
LIMCH1-211ENST00000509638 LAMB4A4D0S4 1761 aa38.55■■■■□ 3.76
LIMCH1-211ENST00000509638 SLC27A3Q5K4L6 730 aa38.55■■■■□ 3.76
LIMCH1-211ENST00000509638 HEG1Q9ULI3 1381 aa38.55■■■■□ 3.76
LIMCH1-211ENST00000509638 ZBED9Q6R2W3 1325 aa38.54■■■■□ 3.76
LIMCH1-211ENST00000509638 SPINK5Q9NQ38 1064 aaPredicted RBP38.54■■■■□ 3.76
LIMCH1-211ENST00000509638 TSR2Q969E8 191 aaKnown RBP38.53■■■■□ 3.76
LIMCH1-211ENST00000509638 LRRC4BQ9NT99 713 aa38.53■■■■□ 3.76
LIMCH1-211ENST00000509638 GOLGA2Q08379 1002 aa38.53■■■■□ 3.76
LIMCH1-211ENST00000509638 ATP6V1AP38606 617 aa38.52■■■■□ 3.76
LIMCH1-211ENST00000509638 EIF4A1P60842 406 aaKnown RBP38.52■■■■□ 3.76
LIMCH1-211ENST00000509638 FANCIQ9NVI1 1328 aa38.5■■■■□ 3.75
LIMCH1-211ENST00000509638 ITPK1Q13572 414 aa38.49■■■■□ 3.75
LIMCH1-211ENST00000509638 C4BP0C0L5 1744 aa38.49■■■■□ 3.75
LIMCH1-211ENST00000509638 VSIG10Q8N0Z9 540 aa38.48■■■■□ 3.75
LIMCH1-211ENST00000509638 YTHDC1Q96MU7 727 aaKnown RBP38.48■■■■□ 3.75
LIMCH1-211ENST00000509638 MYH16Q9H6N6 1097 aa38.47■■■■□ 3.75
LIMCH1-211ENST00000509638 E9PSI1 815 aa38.44■■■■□ 3.74
LIMCH1-211ENST00000509638 KRT24Q2M2I5 525 aa38.44■■■■□ 3.74
LIMCH1-211ENST00000509638 DNAJC10Q8IXB1 793 aa38.44■■■■□ 3.74
LIMCH1-211ENST00000509638 CDCA7LQ96GN5 454 aa38.44■■■■□ 3.74
LIMCH1-211ENST00000509638 LINC00116Q8NCU8 138 aa38.44■■■■□ 3.74
LIMCH1-211ENST00000509638 SNRPA1P09661 255 aaKnown RBP38.43■■■■□ 3.74
LIMCH1-211ENST00000509638 PRAMEF22A3QJZ6 481 aa38.42■■■■□ 3.74
LIMCH1-211ENST00000509638 MYH14Q7Z406 1995 aaKnown RBP38.42■■■■□ 3.74
LIMCH1-211ENST00000509638 GIGYF1O75420 1035 aaPredicted RBP38.41■■■■□ 3.74
LIMCH1-211ENST00000509638 SLFN5Q08AF3 891 aa38.4■■■■□ 3.74
LIMCH1-211ENST00000509638 TUBGCP6Q96RT7 1819 aa38.4■■■■□ 3.74
LIMCH1-211ENST00000509638 UBR3Q6ZT12 1888 aa38.36■■■■□ 3.73
LIMCH1-211ENST00000509638 TEX13AQ9BXU3 409 aaPredicted RBP38.36■■■■□ 3.73
LIMCH1-211ENST00000509638 ANO8Q9HCE9 1232 aaPredicted RBP38.36■■■■□ 3.73
LIMCH1-211ENST00000509638 CYP19A1P11511 503 aaPredicted RBP38.35■■■■□ 3.73
LIMCH1-211ENST00000509638 C8orf58Q8NAV2 365 aa38.35■■■■□ 3.73
LIMCH1-211ENST00000509638 CNTNAP4Q9C0A0 1308 aa38.34■■■■□ 3.73
LIMCH1-211ENST00000509638 DUSP27Q5VZP5 1158 aa38.34■■■■□ 3.73
Retrieved 100 of 20,778 RNA–protein pairs in 29.4 ms