RNA–Protein interactions for RNA: ENST00000505199.5

SNCA-208, Transcript of synuclein alpha, humanhuman

TSL 1 (best) BASIC

Gene SNCA, Length 411 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Synapse .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNCA-208ENST00000505199 IL17REQ8NFR9 667 aa16.41■□□□□ 0.22
SNCA-208ENST00000505199 PIGBQ92521 554 aa16.41■□□□□ 0.22
SNCA-208ENST00000505199 CAMKK2Q96RR4 588 aa16.41■□□□□ 0.22
SNCA-208ENST00000505199 RREB1Q92766 1687 aa16.4■□□□□ 0.22
SNCA-208ENST00000505199 RIPK4P57078 832 aa16.4■□□□□ 0.22
SNCA-208ENST00000505199 CALD1Q05682 793 aaKnown RBP16.4■□□□□ 0.22
SNCA-208ENST00000505199 CICQ96RK0 1608 aaPredicted RBP16.4■□□□□ 0.22
SNCA-208ENST00000505199 PAPPAQ13219 1627 aa16.39■□□□□ 0.21
SNCA-208ENST00000505199 MIER1Q8N108 512 aa16.39■□□□□ 0.21
SNCA-208ENST00000505199 NFATC2IPQ8NCF5 419 aa16.39■□□□□ 0.21
SNCA-208ENST00000505199 LGR6Q9HBX8 967 aa16.39■□□□□ 0.21
SNCA-208ENST00000505199 PALLDQ8WX93 1383 aa16.38■□□□□ 0.21
SNCA-208ENST00000505199 CCDC146Q8IYE0 955 aa16.37■□□□□ 0.21
SNCA-208ENST00000505199 APAF1O14727 1248 aa16.36■□□□□ 0.21
SNCA-208ENST00000505199 TAF7Q15545 349 aaPredicted RBP16.36■□□□□ 0.21
SNCA-208ENST00000505199 PTF1AQ7RTS3 328 aa16.36■□□□□ 0.21
SNCA-208ENST00000505199 VSIG10Q8N0Z9 540 aa16.36■□□□□ 0.21
SNCA-208ENST00000505199 UBR2Q8IWV8 1755 aa16.36■□□□□ 0.21
SNCA-208ENST00000505199 EN1Q05925 392 aaPredicted RBP16.35■□□□□ 0.21
SNCA-208ENST00000505199 TXNRD1Q16881 649 aa16.35■□□□□ 0.21
SNCA-208ENST00000505199 FAM9BQ8IZU0 186 aa16.35■□□□□ 0.21
SNCA-208ENST00000505199 ATG3Q9NT62 314 aa16.35■□□□□ 0.21
SNCA-208ENST00000505199 TRIM35Q9UPQ4 493 aa16.35■□□□□ 0.21
SNCA-208ENST00000505199 ZNF790Q6PG37 636 aa16.34■□□□□ 0.21
SNCA-208ENST00000505199 MCM10Q7L590 875 aa16.34■□□□□ 0.21
SNCA-208ENST00000505199 DEFB132Q7Z7B7 95 aa16.33■□□□□ 0.2
SNCA-208ENST00000505199 TTC5Q8N0Z6 440 aa16.33■□□□□ 0.2
SNCA-208ENST00000505199 PROM2Q8N271 834 aa16.33■□□□□ 0.2
SNCA-208ENST00000505199 ASAP1Q9ULH1 1129 aa16.33■□□□□ 0.2
SNCA-208ENST00000505199 NUP188Q5SRE5 1749 aa16.33■□□□□ 0.2
SNCA-208ENST00000505199 LOC102724428A0A0B4J2F2 783 aa16.32■□□□□ 0.2
SNCA-208ENST00000505199 BTBD11A6QL63 1104 aa16.32■□□□□ 0.2
SNCA-208ENST00000505199 SIK1P57059 783 aa16.32■□□□□ 0.2
SNCA-208ENST00000505199 IL16Q14005 1332 aa16.32■□□□□ 0.2
SNCA-208ENST00000505199 EZH2Q15910 746 aaKnown RBP16.32■□□□□ 0.2
SNCA-208ENST00000505199 TEX13AQ9BXU3 409 aaPredicted RBP16.32■□□□□ 0.2
SNCA-208ENST00000505199 C5P01031 1676 aa16.31■□□□□ 0.2
SNCA-208ENST00000505199 KCPQ6ZWJ8 1503 aa16.31■□□□□ 0.2
SNCA-208ENST00000505199 CCNL1Q9UK58 526 aaPredicted RBP16.31■□□□□ 0.2
SNCA-208ENST00000505199 TAF1LQ8IZX4 1826 aa16.31■□□□□ 0.2
SNCA-208ENST00000505199 KDM3BQ7LBC6 1761 aa16.31■□□□□ 0.2
SNCA-208ENST00000505199 NBPF14Q5TI25 921 aa16.3■□□□□ 0.2
SNCA-208ENST00000505199 WDR63Q8IWG1 891 aa16.3■□□□□ 0.2
SNCA-208ENST00000505199 CFAP44Q96MT7 982 aa16.3■□□□□ 0.2
SNCA-208ENST00000505199 CHL1O00533 1208 aa16.29■□□□□ 0.2
SNCA-208ENST00000505199 DCTN1Q14203 1278 aa16.29■□□□□ 0.2
SNCA-208ENST00000505199 NEUROD2Q15784 382 aa16.29■□□□□ 0.2
SNCA-208ENST00000505199 WWC1Q8IX03 1113 aa16.29■□□□□ 0.2
SNCA-208ENST00000505199 FMNL2Q96PY5 1086 aa16.29■□□□□ 0.2
SNCA-208ENST00000505199 IFT57Q9NWB7 429 aa16.29■□□□□ 0.2
SNCA-208ENST00000505199 RRP7AQ9Y3A4 280 aaKnown RBP16.29■□□□□ 0.2
SNCA-208ENST00000505199 QSER1Q2KHR3 1735 aa16.28■□□□□ 0.2
SNCA-208ENST00000505199 GNAI1P63096 354 aa16.28■□□□□ 0.2
SNCA-208ENST00000505199 COL5A3P25940 1745 aaPredicted RBP16.28■□□□□ 0.2
SNCA-208ENST00000505199 HEG1Q9ULI3 1381 aa16.27■□□□□ 0.2
SNCA-208ENST00000505199 SOS1Q07889 1333 aaPredicted RBP16.27■□□□□ 0.2
SNCA-208ENST00000505199 ZNF853P0CG23 659 aa16.27■□□□□ 0.2
SNCA-208ENST00000505199 ATP6V1AP38606 617 aa16.27■□□□□ 0.2
SNCA-208ENST00000505199 RC3H1Q5TC82 1133 aaKnown RBP16.27■□□□□ 0.2
SNCA-208ENST00000505199 CHMP4AQ9BY43 222 aa16.27■□□□□ 0.2
SNCA-208ENST00000505199 LRRC4BQ9NT99 713 aa16.27■□□□□ 0.2
SNCA-208ENST00000505199 CNTNAP4Q9C0A0 1308 aa16.26■□□□□ 0.19
SNCA-208ENST00000505199 C4BP0C0L5 1744 aa16.25■□□□□ 0.19
SNCA-208ENST00000505199 ZNF521Q96K83 1311 aa16.25■□□□□ 0.19
SNCA-208ENST00000505199 HOXB7P09629 217 aa16.25■□□□□ 0.19
SNCA-208ENST00000505199 SNRPA1P09661 255 aaKnown RBP16.25■□□□□ 0.19
SNCA-208ENST00000505199 FLAD1Q8NFF5 587 aa16.25■□□□□ 0.19
SNCA-208ENST00000505199 ZNF496Q96IT1 587 aaPredicted RBP16.25■□□□□ 0.19
SNCA-208ENST00000505199 TSPYL4Q9UJ04 414 aa16.25■□□□□ 0.19
SNCA-208ENST00000505199 TJP1Q07157 1748 aa16.25■□□□□ 0.19
SNCA-208ENST00000505199 PTCD1O75127 700 aaKnown RBP16.24■□□□□ 0.19
SNCA-208ENST00000505199 STARD3NLO95772 234 aa16.24■□□□□ 0.19
SNCA-208ENST00000505199 SLC39A6Q13433 755 aa16.24■□□□□ 0.19
SNCA-208ENST00000505199 SLC15A2Q16348 729 aa16.24■□□□□ 0.19
SNCA-208ENST00000505199 AKT1S1Q96B36 256 aa16.24■□□□□ 0.19
SNCA-208ENST00000505199 SLC4A9Q96Q91 983 aa16.24■□□□□ 0.19
SNCA-208ENST00000505199 RBM42Q9BTD8 480 aaKnown RBP16.24■□□□□ 0.19
SNCA-208ENST00000505199 THUMPD2Q9BTF0 503 aaKnown RBP16.24■□□□□ 0.19
SNCA-208ENST00000505199 STK32BQ9NY57 414 aa16.24■□□□□ 0.19
SNCA-208ENST00000505199 ADRA2BP18089 450 aa16.23■□□□□ 0.19
SNCA-208ENST00000505199 EIF4A1P60842 406 aaKnown RBP16.23■□□□□ 0.19
SNCA-208ENST00000505199 ITPK1Q13572 414 aa16.22■□□□□ 0.19
SNCA-208ENST00000505199 LAMB4A4D0S4 1761 aa16.22■□□□□ 0.19
SNCA-208ENST00000505199 ERBB4Q15303 1308 aa16.21■□□□□ 0.19
SNCA-208ENST00000505199 GIGYF1O75420 1035 aaPredicted RBP16.21■□□□□ 0.19
SNCA-208ENST00000505199 SSFA2P28290 1259 aa16.21■□□□□ 0.19
SNCA-208ENST00000505199 MYH16Q9H6N6 1097 aa16.21■□□□□ 0.19
SNCA-208ENST00000505199 CYP19A1P11511 503 aaPredicted RBP16.2■□□□□ 0.18
SNCA-208ENST00000505199 LINC00116Q8NCU8 138 aa16.2■□□□□ 0.18
SNCA-208ENST00000505199 UBR3Q6ZT12 1888 aa16.2■□□□□ 0.18
SNCA-208ENST00000505199 SLC16A10Q8TF71 515 aa16.19■□□□□ 0.18
SNCA-208ENST00000505199 AK7Q96M32 723 aa16.19■□□□□ 0.18
SNCA-208ENST00000505199 MBIPQ9NS73 344 aa16.19■□□□□ 0.18
SNCA-208ENST00000505199 RGL2O15211 777 aa16.18■□□□□ 0.18
SNCA-208ENST00000505199 KCNQ3O43525 872 aa16.18■□□□□ 0.18
SNCA-208ENST00000505199 RPS6KA4O75676 772 aa16.18■□□□□ 0.18
SNCA-208ENST00000505199 CRKLP46109 303 aaKnown RBP16.18■□□□□ 0.18
SNCA-208ENST00000505199 GOLGA2Q08379 1002 aa16.18■□□□□ 0.18
SNCA-208ENST00000505199 DNAJC10Q8IXB1 793 aa16.18■□□□□ 0.18
SNCA-208ENST00000505199 ANO8Q9HCE9 1232 aaPredicted RBP16.18■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms