RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 BCL11BQ9C0K0 894 aaPredicted RBP28.41■■■□□ 2.14
C9orf3-222ENST00000496567 PIGBQ92521 554 aa28.41■■■□□ 2.14
C9orf3-222ENST00000496567 IL16Q14005 1332 aa28.4■■■□□ 2.14
C9orf3-222ENST00000496567 SIPA1L3O60292 1781 aaPredicted RBP28.4■■■□□ 2.14
C9orf3-222ENST00000496567 ZBED9Q6R2W3 1325 aa28.39■■■□□ 2.14
C9orf3-222ENST00000496567 TRIM37O94972 964 aa28.39■■■□□ 2.14
C9orf3-222ENST00000496567 BABAM1Q9NWV8 329 aa28.39■■■□□ 2.14
C9orf3-222ENST00000496567 BTBD11A6QL63 1104 aa28.38■■■□□ 2.13
C9orf3-222ENST00000496567 GNAI1P63096 354 aa28.37■■■□□ 2.13
C9orf3-222ENST00000496567 CFAP44Q96MT7 982 aa28.37■■■□□ 2.13
C9orf3-222ENST00000496567 YTHDC1Q96MU7 727 aaKnown RBP28.37■■■□□ 2.13
C9orf3-222ENST00000496567 IFT57Q9NWB7 429 aa28.37■■■□□ 2.13
C9orf3-222ENST00000496567 LAS1LQ9Y4W2 734 aaKnown RBP28.37■■■□□ 2.13
C9orf3-222ENST00000496567 EP400Q96L91 3159 aa28.36■■■□□ 2.13
C9orf3-222ENST00000496567 GOLGA2Q08379 1002 aa28.36■■■□□ 2.13
C9orf3-222ENST00000496567 CHL1O00533 1208 aa28.34■■■□□ 2.13
C9orf3-222ENST00000496567 TSPYL4Q9UJ04 414 aa28.34■■■□□ 2.13
C9orf3-222ENST00000496567 ZNF853P0CG23 659 aa28.33■■■□□ 2.13
C9orf3-222ENST00000496567 PTF1AQ7RTS3 328 aa28.33■■■□□ 2.13
C9orf3-222ENST00000496567 BTAF1O14981 1849 aa28.33■■■□□ 2.13
C9orf3-222ENST00000496567 TTC5Q8N0Z6 440 aa28.33■■■□□ 2.12
C9orf3-222ENST00000496567 SMARCC1Q92922 1105 aaPredicted RBP28.33■■■□□ 2.12
C9orf3-222ENST00000496567 ZNF790Q6PG37 636 aa28.32■■■□□ 2.12
C9orf3-222ENST00000496567 MIS18AQ9NYP9 233 aa28.32■■■□□ 2.12
C9orf3-222ENST00000496567 ILDR2Q71H61 639 aa28.31■■■□□ 2.12
C9orf3-222ENST00000496567 ATG3Q9NT62 314 aa28.31■■■□□ 2.12
C9orf3-222ENST00000496567 ASAP1Q9ULH1 1129 aa28.31■■■□□ 2.12
C9orf3-222ENST00000496567 SLC39A6Q13433 755 aa28.3■■■□□ 2.12
C9orf3-222ENST00000496567 MYH16Q9H6N6 1097 aa28.3■■■□□ 2.12
C9orf3-222ENST00000496567 E9PSI1 815 aa28.29■■■□□ 2.12
C9orf3-222ENST00000496567 CCDC125Q86Z20 511 aa28.29■■■□□ 2.12
C9orf3-222ENST00000496567 PAPPAQ13219 1627 aa28.29■■■□□ 2.12
C9orf3-222ENST00000496567 SF3B2Q13435 895 aaKnown RBP28.28■■■□□ 2.12
C9orf3-222ENST00000496567 MBIPQ9NS73 344 aa28.28■■■□□ 2.12
C9orf3-222ENST00000496567 KDM3BQ7LBC6 1761 aa28.28■■■□□ 2.12
C9orf3-222ENST00000496567 APBA3O96018 575 aa28.27■■■□□ 2.12
C9orf3-222ENST00000496567 SPINK5Q9NQ38 1064 aaPredicted RBP28.27■■■□□ 2.12
C9orf3-222ENST00000496567 TNS1Q9HBL0 1735 aaKnown RBP28.27■■■□□ 2.12
C9orf3-222ENST00000496567 PALLDQ8WX93 1383 aa28.26■■■□□ 2.11
C9orf3-222ENST00000496567 SLFN5Q08AF3 891 aa28.26■■■□□ 2.11
C9orf3-222ENST00000496567 KCNQ3O43525 872 aa28.24■■■□□ 2.11
C9orf3-222ENST00000496567 TSR2Q969E8 191 aaKnown RBP28.24■■■□□ 2.11
C9orf3-222ENST00000496567 CDCA7LQ96GN5 454 aa28.24■■■□□ 2.11
C9orf3-222ENST00000496567 PLSCR1O15162 318 aa28.24■■■□□ 2.11
C9orf3-222ENST00000496567 FMNL2Q96PY5 1086 aa28.24■■■□□ 2.11
C9orf3-222ENST00000496567 UBR2Q8IWV8 1755 aa28.23■■■□□ 2.11
C9orf3-222ENST00000496567 FANCIQ9NVI1 1328 aa28.23■■■□□ 2.11
C9orf3-222ENST00000496567 PTCD1O75127 700 aaKnown RBP28.23■■■□□ 2.11
C9orf3-222ENST00000496567 EIF4A1P60842 406 aaKnown RBP28.23■■■□□ 2.11
C9orf3-222ENST00000496567 RBM42Q9BTD8 480 aaKnown RBP28.22■■■□□ 2.11
C9orf3-222ENST00000496567 ZNF496Q96IT1 587 aaPredicted RBP28.21■■■□□ 2.11
C9orf3-222ENST00000496567 KCPQ6ZWJ8 1503 aa28.21■■■□□ 2.11
C9orf3-222ENST00000496567 TRMT2AQ8IZ69 625 aaKnown RBP28.2■■■□□ 2.11
C9orf3-222ENST00000496567 LOC102724428A0A0B4J2F2 783 aa28.2■■■□□ 2.1
C9orf3-222ENST00000496567 BAG6P46379 1132 aa28.2■■■□□ 2.1
C9orf3-222ENST00000496567 SIK1P57059 783 aa28.2■■■□□ 2.1
C9orf3-222ENST00000496567 VSIG10Q8N0Z9 540 aa28.2■■■□□ 2.1
C9orf3-222ENST00000496567 HEG1Q9ULI3 1381 aa28.19■■■□□ 2.1
C9orf3-222ENST00000496567 LY75O60449 1722 aa28.18■■■□□ 2.1
C9orf3-222ENST00000496567 UPF1Q92900 1129 aaKnown RBP eCLIP28.18■■■□□ 2.1
C9orf3-222ENST00000496567 RGPD3A6NKT7 1758 aaPredicted RBP28.17■■■□□ 2.1
C9orf3-222ENST00000496567 RGPD4Q7Z3J3 1758 aa28.17■■■□□ 2.1
C9orf3-222ENST00000496567 SNRPA1P09661 255 aaKnown RBP28.16■■■□□ 2.1
C9orf3-222ENST00000496567 DUSP27Q5VZP5 1158 aa28.16■■■□□ 2.1
C9orf3-222ENST00000496567 ATP6V1AP38606 617 aa28.16■■■□□ 2.1
C9orf3-222ENST00000496567 SLC27A3Q5K4L6 730 aa28.16■■■□□ 2.1
C9orf3-222ENST00000496567 CCNL1Q9UK58 526 aaPredicted RBP28.16■■■□□ 2.1
C9orf3-222ENST00000496567 HMGB2P26583 209 aaKnown RBP28.15■■■□□ 2.1
C9orf3-222ENST00000496567 TEX13AQ9BXU3 409 aaPredicted RBP28.15■■■□□ 2.1
C9orf3-222ENST00000496567 ZNF831Q5JPB2 1677 aa28.14■■■□□ 2.1
C9orf3-222ENST00000496567 GIGYF1O75420 1035 aaPredicted RBP28.14■■■□□ 2.1
C9orf3-222ENST00000496567 HOXB7P09629 217 aa28.13■■■□□ 2.09
C9orf3-222ENST00000496567 EXOSC9Q06265 439 aaKnown RBP28.13■■■□□ 2.09
C9orf3-222ENST00000496567 TXNRD1Q16881 649 aa28.13■■■□□ 2.09
C9orf3-222ENST00000496567 SLC4A9Q96Q91 983 aa28.13■■■□□ 2.09
C9orf3-222ENST00000496567 SOS1Q07889 1333 aaPredicted RBP28.13■■■□□ 2.09
C9orf3-222ENST00000496567 EN1Q05925 392 aaPredicted RBP28.12■■■□□ 2.09
C9orf3-222ENST00000496567 KRT24Q2M2I5 525 aa28.11■■■□□ 2.09
C9orf3-222ENST00000496567 C8orf58Q8NAV2 365 aa28.11■■■□□ 2.09
C9orf3-222ENST00000496567 CAMKK2Q96RR4 588 aa28.11■■■□□ 2.09
C9orf3-222ENST00000496567 CICQ96RK0 1608 aaPredicted RBP28.11■■■□□ 2.09
C9orf3-222ENST00000496567 DEFB132Q7Z7B7 95 aa28.1■■■□□ 2.09
C9orf3-222ENST00000496567 ELL2O00472 640 aaPredicted RBP28.09■■■□□ 2.09
C9orf3-222ENST00000496567 TWISTNBQ3B726 338 aaPredicted RBP28.09■■■□□ 2.09
C9orf3-222ENST00000496567 DNAJC10Q8IXB1 793 aa28.09■■■□□ 2.09
C9orf3-222ENST00000496567 PROM2Q8N271 834 aa28.09■■■□□ 2.09
C9orf3-222ENST00000496567 CHMP4AQ9BY43 222 aa28.09■■■□□ 2.09
C9orf3-222ENST00000496567 STARD3NLO95772 234 aa28.08■■■□□ 2.09
C9orf3-222ENST00000496567 EZH2Q15910 746 aaKnown RBP28.08■■■□□ 2.09
C9orf3-222ENST00000496567 TSPYL6Q8N831 410 aa28.08■■■□□ 2.09
C9orf3-222ENST00000496567 PRAMEF22A3QJZ6 481 aa28.07■■■□□ 2.08
C9orf3-222ENST00000496567 TJP1Q07157 1748 aa28.07■■■□□ 2.08
C9orf3-222ENST00000496567 ITPK1Q13572 414 aa28.07■■■□□ 2.08
C9orf3-222ENST00000496567 LRRC4BQ9NT99 713 aa28.07■■■□□ 2.08
C9orf3-222ENST00000496567 KCNQ4P56696 695 aa28.07■■■□□ 2.08
C9orf3-222ENST00000496567 USP16Q9Y5T5 823 aa28.07■■■□□ 2.08
C9orf3-222ENST00000496567 C5P01031 1676 aa28.06■■■□□ 2.08
C9orf3-222ENST00000496567 CT47B1P0C2W7 299 aaPredicted RBP28.06■■■□□ 2.08
C9orf3-222ENST00000496567 LAMB4A4D0S4 1761 aa28.05■■■□□ 2.08
C9orf3-222ENST00000496567 VAMP4O75379 141 aa28.04■■■□□ 2.08
Retrieved 100 of 20,778 RNA–protein pairs in 799.7 ms