RNA–Protein interactions for RNA: ENST00000496447.5

PTPRF-215, Transcript of protein tyrosine phosphatase, receptor type F, humanhuman

TSL 1 (best)

Gene PTPRF, Length 5,887 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTPRF-215ENST00000496447 BMP2KQ9NSY1 1161 aaPredicted RBP15.48■□□□□ 0.07
PTPRF-215ENST00000496447 UQCRHLA0A096LP55 91 aa15.48■□□□□ 0.07
PTPRF-215ENST00000496447 UQCRHP07919 91 aa15.48■□□□□ 0.07
PTPRF-215ENST00000496447 IFIT5Q13325 482 aaKnown RBP15.48■□□□□ 0.07
PTPRF-215ENST00000496447 TANGO6Q9C0B7 1094 aa15.48■□□□□ 0.07
PTPRF-215ENST00000496447 GRPEL1Q9HAV7 217 aa15.48■□□□□ 0.07
PTPRF-215ENST00000496447 ZNHIT6Q9NWK9 470 aaKnown RBP15.48■□□□□ 0.07
PTPRF-215ENST00000496447 MYO6Q9UM54 1294 aa15.48■□□□□ 0.07
PTPRF-215ENST00000496447 NAIPQ13075 1403 aa15.48■□□□□ 0.07
PTPRF-215ENST00000496447 WASF1Q92558 559 aa15.48■□□□□ 0.07
PTPRF-215ENST00000496447 KRT85P78386 507 aa15.47■□□□□ 0.07
PTPRF-215ENST00000496447 DZIP1Q86YF9 867 aaKnown RBP15.47■□□□□ 0.07
PTPRF-215ENST00000496447 ZSCAN31Q96LW9 406 aaPredicted RBP15.47■□□□□ 0.07
PTPRF-215ENST00000496447 ADGRF5Q8IZF2 1346 aa15.47■□□□□ 0.07
PTPRF-215ENST00000496447 SERPINC1P01008 464 aa15.46■□□□□ 0.07
PTPRF-215ENST00000496447 DNAJC5BQ9UF47 199 aa15.46■□□□□ 0.07
PTPRF-215ENST00000496447 CUL7Q14999 1698 aa15.46■□□□□ 0.07
PTPRF-215ENST00000496447 K7ELQ4 463 aaPredicted RBP15.46■□□□□ 0.07
PTPRF-215ENST00000496447 RAB11FIP3O75154 756 aa15.46■□□□□ 0.07
PTPRF-215ENST00000496447 WDHD1O75717 1129 aaPredicted RBP15.46■□□□□ 0.06
PTPRF-215ENST00000496447 SLFN5Q08AF3 891 aa15.46■□□□□ 0.06
PTPRF-215ENST00000496447 MKNK2Q9HBH9 465 aa15.46■□□□□ 0.06
PTPRF-215ENST00000496447 PCF11O94913 1555 aaKnown RBP15.45■□□□□ 0.06
PTPRF-215ENST00000496447 HSP90B2PQ58FF3 399 aa15.45■□□□□ 0.06
PTPRF-215ENST00000496447 ZNF219Q9P2Y4 722 aaPredicted RBP15.45■□□□□ 0.06
PTPRF-215ENST00000496447 MINDY4BA8MYZ0 360 aa15.45■□□□□ 0.06
PTPRF-215ENST00000496447 SLC5A1P13866 664 aa15.45■□□□□ 0.06
PTPRF-215ENST00000496447 BCL11BQ9C0K0 894 aaPredicted RBP15.45■□□□□ 0.06
PTPRF-215ENST00000496447 TNMDQ9H2S6 317 aa15.45■□□□□ 0.06
PTPRF-215ENST00000496447 ABCC5O15440 1437 aa15.45■□□□□ 0.06
PTPRF-215ENST00000496447 FANCAO15360 1455 aa15.45■□□□□ 0.06
PTPRF-215ENST00000496447 CADPS2Q86UW7 1296 aa15.45■□□□□ 0.06
PTPRF-215ENST00000496447 GLRX3O76003 335 aaKnown RBP15.44■□□□□ 0.06
PTPRF-215ENST00000496447 MATR3P43243 847 aaKnown RBP eCLIP15.44■□□□□ 0.067e-14■■■■■ 41.6
PTPRF-215ENST00000496447 HYPKQ9NX55 129 aa15.44■□□□□ 0.06
PTPRF-215ENST00000496447 ANKRD18BA2A2Z9 1011 aa15.44■□□□□ 0.06
PTPRF-215ENST00000496447 SEC63Q9UGP8 760 aaKnown RBP15.44■□□□□ 0.06
PTPRF-215ENST00000496447 CCP110O43303 1012 aa15.44■□□□□ 0.06
PTPRF-215ENST00000496447 TSPYL1Q9H0U9 437 aa15.44■□□□□ 0.06
PTPRF-215ENST00000496447 ABCC11Q96J66 1382 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 MX1P20591 662 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 MAP3K12Q12852 859 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 U3KPZ7 1027 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-215ENST00000496447 DNAAF4Q8WXU2 420 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 DEF6Q9H4E7 631 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 CCDC192P0DO97 292 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 PPFIBP1Q86W92 1011 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 TTLL12Q14166 644 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-215ENST00000496447 IFNL2Q8IZJ0 200 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 LUC7LQ9NQ29 371 aaKnown RBP15.43■□□□□ 0.06
PTPRF-215ENST00000496447 GPTP24298 496 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 NAPBQ9H115 298 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 BOLA2Q9H3K6 86 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 DBF4Q9UBU7 674 aaPredicted RBP15.43■□□□□ 0.06
PTPRF-215ENST00000496447 PTPN23Q9H3S7 1636 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 NOS1P29475 1434 aa15.43■□□□□ 0.06
PTPRF-215ENST00000496447 CASTP20810 708 aaKnown RBP15.42■□□□□ 0.06
PTPRF-215ENST00000496447 SPATA32Q96LK8 384 aa15.42■□□□□ 0.06
PTPRF-215ENST00000496447 TEX13AQ9BXU3 409 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-215ENST00000496447 ALDH1L2Q3SY69 923 aa15.42■□□□□ 0.06
PTPRF-215ENST00000496447 ZBTB3Q9H5J0 574 aa15.42■□□□□ 0.06
PTPRF-215ENST00000496447 CFAP45Q9UL16 551 aa15.42■□□□□ 0.06
PTPRF-215ENST00000496447 TTC21BQ7Z4L5 1316 aa15.42■□□□□ 0.06
PTPRF-215ENST00000496447 IBSPP21815 317 aaPredicted RBP15.42■□□□□ 0.06
PTPRF-215ENST00000496447 TNIP1Q15025 636 aa15.41■□□□□ 0.06
PTPRF-215ENST00000496447 SLF2Q8IX21 1173 aa15.41■□□□□ 0.06
PTPRF-215ENST00000496447 A0A087WZG4 1122 aa15.41■□□□□ 0.06
PTPRF-215ENST00000496447 C6orf229H3BNL8 230 aa15.41■□□□□ 0.06
PTPRF-215ENST00000496447 CEP57L1Q8IYX8 460 aa15.41■□□□□ 0.06
PTPRF-215ENST00000496447 TNRQ92752 1358 aa15.4■□□□□ 0.06
PTPRF-215ENST00000496447 F6X3S4 739 aa15.4■□□□□ 0.06
PTPRF-215ENST00000496447 ERCC4Q92889 916 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-215ENST00000496447 PAXIP1Q6ZW49 1069 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-215ENST00000496447 ZSCAN30Q86W11 494 aa15.4■□□□□ 0.06
PTPRF-215ENST00000496447 MSH6P52701 1360 aa15.4■□□□□ 0.06
PTPRF-215ENST00000496447 DDX11Q96FC9 970 aa15.4■□□□□ 0.06
PTPRF-215ENST00000496447 SMARCA5O60264 1052 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-215ENST00000496447 SSH1Q8WYL5 1049 aa15.4■□□□□ 0.06
PTPRF-215ENST00000496447 ZNF444Q8N0Y2 327 aaPredicted RBP15.4■□□□□ 0.06
PTPRF-215ENST00000496447 ANKRD24Q8TF21 1146 aa15.4■□□□□ 0.06
PTPRF-215ENST00000496447 CEP131Q9UPN4 1083 aa15.4■□□□□ 0.06
PTPRF-215ENST00000496447 CHRNA2Q15822 529 aa15.39■□□□□ 0.05
PTPRF-215ENST00000496447 NCOA1Q15788 1441 aa15.39■□□□□ 0.05
PTPRF-215ENST00000496447 CCDC184Q52MB2 194 aa15.39■□□□□ 0.05
PTPRF-215ENST00000496447 CCDC96Q2M329 555 aa15.39■□□□□ 0.05
PTPRF-215ENST00000496447 SEPT11Q9NVA2 429 aaKnown RBP15.39■□□□□ 0.05
PTPRF-215ENST00000496447 PRPF40BQ6NWY9 871 aaKnown RBP15.38■□□□□ 0.05
PTPRF-215ENST00000496447 TXLNBQ8N3L3 684 aa15.38■□□□□ 0.05
PTPRF-215ENST00000496447 SPC24Q8NBT2 197 aa15.38■□□□□ 0.05
PTPRF-215ENST00000496447 CCDC8Q9H0W5 538 aaPredicted RBP15.38■□□□□ 0.05
PTPRF-215ENST00000496447 ACEP12821 1306 aa15.38■□□□□ 0.05
PTPRF-215ENST00000496447 RANBP6O60518 1105 aaKnown RBP15.38■□□□□ 0.05
PTPRF-215ENST00000496447 LRRFIP2Q9Y608 721 aaKnown RBP15.38■□□□□ 0.05
PTPRF-215ENST00000496447 RFC4P35249 363 aa15.38■□□□□ 0.05
PTPRF-215ENST00000496447 WDR97A6NE52 1622 aa15.38■□□□□ 0.05
PTPRF-215ENST00000496447 CHMP4BP1P59074 171 aa15.38■□□□□ 0.05
PTPRF-215ENST00000496447 WDR78Q5VTH9 848 aa15.38■□□□□ 0.05
PTPRF-215ENST00000496447 LEKR1Q6ZMV7 388 aa15.38■□□□□ 0.05
PTPRF-215ENST00000496447 DDX46Q7L014 1031 aaKnown RBP15.38■□□□□ 0.05
PTPRF-215ENST00000496447 CTCFLQ8NI51 663 aaPredicted RBP15.38■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms