RNA–Protein interactions for RNA: ENST00000495522.1

CALD1-222, Transcript of caldesmon 1, human

TSL 5 BASIC

Gene CALD1, Length 2,199 nt, Biotype protein coding, Subcellular localisation Ribosome .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CALD1-222	ENST00000495522	NECTIN2	Q92692	538 aa		18.97	■□□□□ 0.63
CALD1-222	ENST00000495522	NBPF6	Q5VWK0	638 aa		18.96	■□□□□ 0.63
CALD1-222	ENST00000495522	CASC1	Q6TDU7	716 aa		18.96	■□□□□ 0.63
CALD1-222	ENST00000495522	NBPF4	Q96M43	638 aa		18.96	■□□□□ 0.63
CALD1-222	ENST00000495522	SDS	P20132	328 aa		18.96	■□□□□ 0.63
CALD1-222	ENST00000495522	CIZ1	Q9ULV3	898 aa	Predicted RBP	18.96	■□□□□ 0.63
CALD1-222	ENST00000495522	NPHP4	O75161	1426 aa	Predicted RBP	18.96	■□□□□ 0.63
CALD1-222	ENST00000495522	MED1	Q15648	1581 aa	Predicted RBP	18.95	■□□□□ 0.62
CALD1-222	ENST00000495522	OSBPL3	Q9H4L5	887 aa		18.95	■□□□□ 0.62
CALD1-222	ENST00000495522		K7ELQ4	463 aa	Predicted RBP	18.94	■□□□□ 0.62
CALD1-222	ENST00000495522	HDGFL1	Q5TGJ6	251 aa		18.94	■□□□□ 0.62
CALD1-222	ENST00000495522	IL27	Q8NEV9	243 aa		18.93	■□□□□ 0.62
CALD1-222	ENST00000495522	ZBTB7C	A1YPR0	619 aa		18.92	■□□□□ 0.62
CALD1-222	ENST00000495522	CD2BP2	O95400	341 aa	Known RBP	18.92	■□□□□ 0.62
CALD1-222	ENST00000495522	ATP8B2	P98198	1209 aa		18.92	■□□□□ 0.62
CALD1-222	ENST00000495522	RBM42	Q9BTD8	480 aa	Known RBP	18.92	■□□□□ 0.62
CALD1-222	ENST00000495522	USP26	Q9BXU7	913 aa		18.92	■□□□□ 0.62
CALD1-222	ENST00000495522	PDE1A	P54750	535 aa		18.92	■□□□□ 0.62
CALD1-222	ENST00000495522	RABEP1	Q15276	862 aa		18.92	■□□□□ 0.62
CALD1-222	ENST00000495522	LMO7	Q8WWI1	1683 aa		18.92	■□□□□ 0.62
CALD1-222	ENST00000495522	HSP90AA1	P07900	732 aa	Known RBP	18.91	■□□□□ 0.62
CALD1-222	ENST00000495522	HOXB7	P09629	217 aa		18.91	■□□□□ 0.62
CALD1-222	ENST00000495522	CHMP4A	Q9BY43	222 aa		18.91	■□□□□ 0.62
CALD1-222	ENST00000495522	EXOC6B	Q9Y2D4	811 aa		18.91	■□□□□ 0.62
CALD1-222	ENST00000495522	SLIT3	O75094	1523 aa		18.91	■□□□□ 0.62
CALD1-222	ENST00000495522	RGPD2	P0DJD1	1756 aa		18.91	■□□□□ 0.62
CALD1-222	ENST00000495522	KDM3B	Q7LBC6	1761 aa		18.91	■□□□□ 0.62
CALD1-222	ENST00000495522	HSPA2	P54652	639 aa		18.91	■□□□□ 0.62
CALD1-222	ENST00000495522	LRRCC1	Q9C099	1032 aa		18.91	■□□□□ 0.62
CALD1-222	ENST00000495522	DDX11L8	A8MPP1	907 aa		18.9	■□□□□ 0.62
CALD1-222	ENST00000495522	EIF4A1	P60842	406 aa	Known RBP	18.9	■□□□□ 0.62
CALD1-222	ENST00000495522	PLEKHO1	Q53GL0	409 aa	Predicted RBP	18.9	■□□□□ 0.62
CALD1-222	ENST00000495522	AKAP4	Q5JQC9	854 aa		18.9	■□□□□ 0.62
CALD1-222	ENST00000495522	LGR6	Q9HBX8	967 aa		18.9	■□□□□ 0.62
CALD1-222	ENST00000495522	PNMA6E	A0A0J9YXQ4	647 aa		18.89	■□□□□ 0.62
CALD1-222	ENST00000495522	ZNF530	Q6P9A1	599 aa	Predicted RBP	18.89	■□□□□ 0.62
CALD1-222	ENST00000495522	LRRFIP2	Q9Y608	721 aa	Known RBP	18.89	■□□□□ 0.62
CALD1-222	ENST00000495522	REC8	O95072	547 aa		18.89	■□□□□ 0.61
CALD1-222	ENST00000495522	GC	P02774	474 aa		18.89	■□□□□ 0.61
CALD1-222	ENST00000495522	ARHGEF25	Q86VW2	580 aa		18.89	■□□□□ 0.61
CALD1-222	ENST00000495522	LRRC59	Q96AG4	307 aa	Known RBP	18.89	■□□□□ 0.61
CALD1-222	ENST00000495522	ORAI2	Q96SN7	254 aa		18.89	■□□□□ 0.61
CALD1-222	ENST00000495522	IBTK	Q9P2D0	1353 aa	Predicted RBP	18.88	■□□□□ 0.61
CALD1-222	ENST00000495522	NCAPD2	Q15021	1401 aa		18.88	■□□□□ 0.61
CALD1-222	ENST00000495522	UBTFL1	P0CB47	393 aa	Predicted RBP	18.88	■□□□□ 0.61
CALD1-222	ENST00000495522	AMOT	Q4VCS5	1084 aa		18.88	■□□□□ 0.61
CALD1-222	ENST00000495522	USP44	Q9H0E7	712 aa		18.88	■□□□□ 0.61
CALD1-222	ENST00000495522	PHAX	Q9H814	394 aa	Known RBP	18.88	■□□□□ 0.61
CALD1-222	ENST00000495522	LMTK3	Q96Q04	1460 aa		18.88	■□□□□ 0.61
CALD1-222	ENST00000495522	SALL3	Q9BXA9	1300 aa		18.88	■□□□□ 0.61
CALD1-222	ENST00000495522	TEF	Q10587	303 aa		18.88	■□□□□ 0.61
CALD1-222	ENST00000495522	BRPF3	Q9ULD4	1205 aa		18.88	■□□□□ 0.61
CALD1-222	ENST00000495522	RAB3GAP1	Q15042	981 aa		18.87	■□□□□ 0.61
CALD1-222	ENST00000495522	ERC2	O15083	957 aa		18.86	■□□□□ 0.61
CALD1-222	ENST00000495522	EIF2S2	P20042	333 aa	Known RBP	18.86	■□□□□ 0.61
CALD1-222	ENST00000495522	XPC	Q01831	940 aa	Predicted RBP	18.86	■□□□□ 0.61
CALD1-222	ENST00000495522	TNPO1	Q92973	898 aa	Known RBP	18.86	■□□□□ 0.61
CALD1-222	ENST00000495522	SRCIN1	Q9C0H9	1055 aa		18.86	■□□□□ 0.61
CALD1-222	ENST00000495522	TRAK2	O60296	914 aa		18.85	■□□□□ 0.61
CALD1-222	ENST00000495522	MX1	P20591	662 aa		18.85	■□□□□ 0.61
CALD1-222	ENST00000495522	OVOS2	A0A0G2JMS6	1433 aa		18.85	■□□□□ 0.61
CALD1-222	ENST00000495522	TRPM3	Q9HCF6	1732 aa	Predicted RBP	18.85	■□□□□ 0.61
CALD1-222	ENST00000495522	BTBD11	A6QL63	1104 aa		18.85	■□□□□ 0.61
CALD1-222	ENST00000495522	L1TD1	Q5T7N2	865 aa	Known RBP	18.85	■□□□□ 0.61
CALD1-222	ENST00000495522	GBP4	Q96PP9	640 aa		18.85	■□□□□ 0.61
CALD1-222	ENST00000495522	C1orf141	Q5JVX7	400 aa		18.84	■□□□□ 0.61
CALD1-222	ENST00000495522	ANKRD24	Q8TF21	1146 aa		18.84	■□□□□ 0.61
CALD1-222	ENST00000495522	CHPF2	Q9P2E5	772 aa		18.84	■□□□□ 0.61
CALD1-222	ENST00000495522	TUBGCP6	Q96RT7	1819 aa		18.84	■□□□□ 0.61
CALD1-222	ENST00000495522	KIF1A	Q12756	1690 aa		18.83	■□□□□ 0.61
CALD1-222	ENST00000495522	LMOD2	Q6P5Q4	547 aa		18.83	■□□□□ 0.61
CALD1-222	ENST00000495522	MPRIP	Q6WCQ1	1025 aa		18.83	■□□□□ 0.61
CALD1-222	ENST00000495522	SSH3	Q8TE77	659 aa		18.83	■□□□□ 0.61
CALD1-222	ENST00000495522	FOXD4L1	Q9NU39	408 aa		18.83	■□□□□ 0.61
CALD1-222	ENST00000495522	CAMTA1	Q9Y6Y1	1673 aa		18.83	■□□□□ 0.6
CALD1-222	ENST00000495522	RNMT	O43148	476 aa	Known RBP	18.83	■□□□□ 0.6
CALD1-222	ENST00000495522	KCNQ3	O43525	872 aa		18.83	■□□□□ 0.6
CALD1-222	ENST00000495522	STAP2	Q9UGK3	403 aa		18.83	■□□□□ 0.6
CALD1-222	ENST00000495522	PXDN	Q92626	1479 aa		18.82	■□□□□ 0.6
CALD1-222	ENST00000495522	PROSER2	Q86WR7	435 aa	Predicted RBP	18.82	■□□□□ 0.6
CALD1-222	ENST00000495522	RTN4	Q9NQC3	1192 aa	Known RBP	18.82	■□□□□ 0.6
CALD1-222	ENST00000495522	KRT28	Q7Z3Y7	464 aa		18.82	■□□□□ 0.6
CALD1-222	ENST00000495522	DNAAF4	Q8WXU2	420 aa		18.82	■□□□□ 0.6
CALD1-222	ENST00000495522	AOX1	Q06278	1338 aa		18.81	■□□□□ 0.6
CALD1-222	ENST00000495522	ST18	O60284	1047 aa		18.81	■□□□□ 0.6
CALD1-222	ENST00000495522	TSHZ3	Q63HK5	1081 aa		18.81	■□□□□ 0.6
CALD1-222	ENST00000495522	C1orf167	Q5SNV9	1468 aa		18.81	■□□□□ 0.6
CALD1-222	ENST00000495522	RAB11FIP3	O75154	756 aa		18.81	■□□□□ 0.6
CALD1-222	ENST00000495522	PLEKHG5	O94827	1062 aa		18.81	■□□□□ 0.6
CALD1-222	ENST00000495522	PTMS	P20962	102 aa		18.81	■□□□□ 0.6
CALD1-222	ENST00000495522	POLA2	Q14181	598 aa		18.81	■□□□□ 0.6
CALD1-222	ENST00000495522	BEND3	Q5T5X7	828 aa		18.81	■□□□□ 0.6
CALD1-222	ENST00000495522	PI4KAP2	A4QPH2	592 aa		18.79	■□□□□ 0.6
CALD1-222	ENST00000495522	PPP1R42	Q7Z4L9	355 aa		18.79	■□□□□ 0.6
CALD1-222	ENST00000495522	PI4KAP1	Q8N8J0	262 aa		18.79	■□□□□ 0.6
CALD1-222	ENST00000495522	MST1R	Q04912	1400 aa		18.79	■□□□□ 0.6
CALD1-222	ENST00000495522	STRC	Q7RTU9	1775 aa		18.79	■□□□□ 0.6
CALD1-222	ENST00000495522	ESYT1	Q9BSJ8	1104 aa		18.79	■□□□□ 0.6
CALD1-222	ENST00000495522	GZF1	Q9H116	711 aa	Predicted RBP	18.79	■□□□□ 0.6
CALD1-222	ENST00000495522	DBF4	Q9UBU7	674 aa	Predicted RBP	18.79	■□□□□ 0.6

Retrieved 100 of 20,778 RNA–protein pairs in 73 ms