RNA–Protein interactions for RNA: ENST00000494255.5

TRA2A-209, Transcript of transformer 2 alpha homolog, humanhuman

TSL 1 (best)

Gene TRA2A, Length 1,653 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRA2A-209ENST00000494255 PNISRQ8TF01 805 aaKnown RBP16.46■□□□□ 0.23
TRA2A-209ENST00000494255 LY75O60449 1722 aa16.46■□□□□ 0.23
TRA2A-209ENST00000494255 NUP188Q5SRE5 1749 aa16.46■□□□□ 0.23
TRA2A-209ENST00000494255 PROM2Q8N271 834 aa16.45■□□□□ 0.22
TRA2A-209ENST00000494255 ASAP1Q9ULH1 1129 aa16.45■□□□□ 0.22
TRA2A-209ENST00000494255 TMPOP42166 694 aaKnown RBP16.44■□□□□ 0.22
TRA2A-209ENST00000494255 NBPF14Q5TI25 921 aa16.44■□□□□ 0.22
TRA2A-209ENST00000494255 MCM10Q7L590 875 aa16.44■□□□□ 0.22
TRA2A-209ENST00000494255 ATG3Q9NT62 314 aa16.44■□□□□ 0.22
TRA2A-209ENST00000494255 CCNL1Q9UK58 526 aaPredicted RBP16.44■□□□□ 0.22
TRA2A-209ENST00000494255 CEMIPQ8WUJ3 1361 aa16.44■□□□□ 0.22
TRA2A-209ENST00000494255 RIPK4P57078 832 aa16.43■□□□□ 0.22
TRA2A-209ENST00000494255 LMOD3Q0VAK6 560 aa16.43■□□□□ 0.22
TRA2A-209ENST00000494255 HMGB2P26583 209 aaKnown RBP16.43■□□□□ 0.22
TRA2A-209ENST00000494255 CCER2I3L3R5 266 aa16.42■□□□□ 0.22
TRA2A-209ENST00000494255 DCTN1Q14203 1278 aa16.42■□□□□ 0.22
TRA2A-209ENST00000494255 NEUROD2Q15784 382 aa16.42■□□□□ 0.22
TRA2A-209ENST00000494255 RRP7AQ9Y3A4 280 aaKnown RBP16.42■□□□□ 0.22
TRA2A-209ENST00000494255 FAM9BQ8IZU0 186 aa16.41■□□□□ 0.22
TRA2A-209ENST00000494255 RBM42Q9BTD8 480 aaKnown RBP16.41■□□□□ 0.22
TRA2A-209ENST00000494255 LOC102724428A0A0B4J2F2 783 aa16.4■□□□□ 0.22
TRA2A-209ENST00000494255 SIK1P57059 783 aa16.4■□□□□ 0.22
TRA2A-209ENST00000494255 LRRC4BQ9NT99 713 aa16.4■□□□□ 0.22
TRA2A-209ENST00000494255 SIPA1L3O60292 1781 aaPredicted RBP16.4■□□□□ 0.22
TRA2A-209ENST00000494255 APAF1O14727 1248 aa16.4■□□□□ 0.22
TRA2A-209ENST00000494255 KCNQ4P56696 695 aa16.4■□□□□ 0.22
TRA2A-209ENST00000494255 TTC5Q8N0Z6 440 aa16.4■□□□□ 0.22
TRA2A-209ENST00000494255 PTCD1O75127 700 aaKnown RBP16.39■□□□□ 0.21
TRA2A-209ENST00000494255 SLC39A6Q13433 755 aa16.39■□□□□ 0.21
TRA2A-209ENST00000494255 STK32BQ9NY57 414 aa16.39■□□□□ 0.21
TRA2A-209ENST00000494255 PAPPAQ13219 1627 aa16.39■□□□□ 0.21
TRA2A-209ENST00000494255 BTBD11A6QL63 1104 aa16.38■□□□□ 0.21
TRA2A-209ENST00000494255 ATP6V1AP38606 617 aa16.38■□□□□ 0.21
TRA2A-209ENST00000494255 C5P01031 1676 aa16.37■□□□□ 0.21
TRA2A-209ENST00000494255 TAF7Q15545 349 aaPredicted RBP16.37■□□□□ 0.21
TRA2A-209ENST00000494255 MIER1Q8N108 512 aa16.37■□□□□ 0.21
TRA2A-209ENST00000494255 THUMPD2Q9BTF0 503 aaKnown RBP16.37■□□□□ 0.21
TRA2A-209ENST00000494255 ANO8Q9HCE9 1232 aaPredicted RBP16.37■□□□□ 0.21
TRA2A-209ENST00000494255 R3HDM1Q15032 1099 aaKnown RBP16.37■□□□□ 0.21
TRA2A-209ENST00000494255 TAF1LQ8IZX4 1826 aa16.36■□□□□ 0.21
TRA2A-209ENST00000494255 ZNF831Q5JPB2 1677 aa16.36■□□□□ 0.21
TRA2A-209ENST00000494255 ZNF790Q6PG37 636 aa16.36■□□□□ 0.21
TRA2A-209ENST00000494255 PSDA5PKW4 1024 aaPredicted RBP16.35■□□□□ 0.21
TRA2A-209ENST00000494255 SLC15A2Q16348 729 aa16.35■□□□□ 0.21
TRA2A-209ENST00000494255 TRIM35Q9UPQ4 493 aa16.35■□□□□ 0.21
TRA2A-209ENST00000494255 UBR2Q8IWV8 1755 aa16.34■□□□□ 0.21
TRA2A-209ENST00000494255 KCPQ6ZWJ8 1503 aa16.34■□□□□ 0.21
TRA2A-209ENST00000494255 ITPK1Q13572 414 aa16.34■□□□□ 0.21
TRA2A-209ENST00000494255 ZNF827Q17R98 1081 aa16.33■□□□□ 0.2
TRA2A-209ENST00000494255 AKT1S1Q96B36 256 aa16.33■□□□□ 0.2
TRA2A-209ENST00000494255 AK7Q96M32 723 aa16.33■□□□□ 0.2
TRA2A-209ENST00000494255 FMNL2Q96PY5 1086 aa16.33■□□□□ 0.2
TRA2A-209ENST00000494255 SLC4A9Q96Q91 983 aa16.33■□□□□ 0.2
TRA2A-209ENST00000494255 TFCP2L1Q9NZI6 479 aa16.33■□□□□ 0.2
TRA2A-209ENST00000494255 C4BP0C0L5 1744 aa16.33■□□□□ 0.2
TRA2A-209ENST00000494255 CALD1Q05682 793 aaKnown RBP16.32■□□□□ 0.2
TRA2A-209ENST00000494255 LINC00116Q8NCU8 138 aa16.32■□□□□ 0.2
TRA2A-209ENST00000494255 ZNF496Q96IT1 587 aaPredicted RBP16.32■□□□□ 0.2
TRA2A-209ENST00000494255 KCNQ3O43525 872 aa16.31■□□□□ 0.2
TRA2A-209ENST00000494255 VSIG10Q8N0Z9 540 aa16.31■□□□□ 0.2
TRA2A-209ENST00000494255 MIS18AQ9NYP9 233 aa16.31■□□□□ 0.2
TRA2A-209ENST00000494255 CICQ96RK0 1608 aaPredicted RBP16.31■□□□□ 0.2
TRA2A-209ENST00000494255 COL5A3P25940 1745 aaPredicted RBP16.3■□□□□ 0.2
TRA2A-209ENST00000494255 TJP1Q07157 1748 aa16.3■□□□□ 0.2
TRA2A-209ENST00000494255 BABAM1Q9NWV8 329 aa16.3■□□□□ 0.2
TRA2A-209ENST00000494255 TSPYL4Q9UJ04 414 aa16.3■□□□□ 0.2
TRA2A-209ENST00000494255 HEG1Q9ULI3 1381 aa16.3■□□□□ 0.2
TRA2A-209ENST00000494255 KDM3BQ7LBC6 1761 aa16.3■□□□□ 0.2
TRA2A-209ENST00000494255 SENP3-EIF4A1A0A087X0R7 540 aa16.3■□□□□ 0.2
TRA2A-209ENST00000494255 NCBP3Q53F19 620 aaKnown RBP16.3■□□□□ 0.2
TRA2A-209ENST00000494255 DNAJC10Q8IXB1 793 aa16.3■□□□□ 0.2
TRA2A-209ENST00000494255 TEX13AQ9BXU3 409 aaPredicted RBP16.3■□□□□ 0.2
TRA2A-209ENST00000494255 LAS1LQ9Y4W2 734 aaKnown RBP16.3■□□□□ 0.2
TRA2A-209ENST00000494255 QSER1Q2KHR3 1735 aa16.29■□□□□ 0.2
TRA2A-209ENST00000494255 CNTNAP4Q9C0A0 1308 aa16.29■□□□□ 0.2
TRA2A-209ENST00000494255 CCDC27Q2M243 656 aa16.29■□□□□ 0.2
TRA2A-209ENST00000494255 RC3H1Q5TC82 1133 aaKnown RBP16.29■□□□□ 0.2
TRA2A-209ENST00000494255 NGEFQ8N5V2 710 aa16.29■□□□□ 0.2
TRA2A-209ENST00000494255 TUBGCP6Q96RT7 1819 aa16.28■□□□□ 0.2
TRA2A-209ENST00000494255 GNPATO15228 680 aa16.28■□□□□ 0.2
TRA2A-209ENST00000494255 STARD3NLO95772 234 aa16.27■□□□□ 0.2
TRA2A-209ENST00000494255 CRKLP46109 303 aaKnown RBP16.27■□□□□ 0.2
TRA2A-209ENST00000494255 FLAD1Q8NFF5 587 aa16.27■□□□□ 0.2
TRA2A-209ENST00000494255 SALL2Q9Y467 1007 aaPredicted RBP16.27■□□□□ 0.2
TRA2A-209ENST00000494255 SNRPA1P09661 255 aaKnown RBP16.27■□□□□ 0.19
TRA2A-209ENST00000494255 WWC1Q8IX03 1113 aa16.27■□□□□ 0.19
TRA2A-209ENST00000494255 UBR3Q6ZT12 1888 aa16.26■□□□□ 0.19
TRA2A-209ENST00000494255 PNPLA7Q6ZV29 1317 aa16.26■□□□□ 0.19
TRA2A-209ENST00000494255 CHL1O00533 1208 aa16.26■□□□□ 0.19
TRA2A-209ENST00000494255 MSH5O43196 834 aa16.26■□□□□ 0.19
TRA2A-209ENST00000494255 CYP19A1P11511 503 aaPredicted RBP16.26■□□□□ 0.19
TRA2A-209ENST00000494255 GNAI1P63096 354 aa16.26■□□□□ 0.19
TRA2A-209ENST00000494255 CFAP44Q96MT7 982 aa16.26■□□□□ 0.19
TRA2A-209ENST00000494255 CCDC87Q9NVE4 849 aa16.26■□□□□ 0.19
TRA2A-209ENST00000494255 RTCBQ9Y3I0 505 aaKnown RBP16.26■□□□□ 0.19
TRA2A-209ENST00000494255 PHF14O94880 888 aa16.25■□□□□ 0.19
TRA2A-209ENST00000494255 SSFA2P28290 1259 aa16.25■□□□□ 0.19
TRA2A-209ENST00000494255 EIF4A1P60842 406 aaKnown RBP16.25■□□□□ 0.19
TRA2A-209ENST00000494255 IFT57Q9NWB7 429 aa16.25■□□□□ 0.19
TRA2A-209ENST00000494255 CASZ1Q86V15 1759 aa16.25■□□□□ 0.19
Retrieved 100 of 20,778 RNA–protein pairs in 13 ms