RNA–Protein interactions for RNA: ENST00000492859.5

BRCA1-220, Transcript of BRCA1, DNA repair associated, humanhuman

TSL 1 (best)

Gene BRCA1, Length 1,584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
BRCA1-220ENST00000492859 CAMK2BQ13554 666 aa5.25□□□□□ -1.57
BRCA1-220ENST00000492859 SAFB2Q14151 953 aaKnown RBP eCLIP5.25□□□□□ -1.573e-6■□□□□ 8.3
BRCA1-220ENST00000492859 TTLL12Q14166 644 aaPredicted RBP5.25□□□□□ -1.57
BRCA1-220ENST00000492859 HDGFL1Q5TGJ6 251 aa5.25□□□□□ -1.57
BRCA1-220ENST00000492859 LSM14AQ8ND56 463 aaKnown RBP5.25□□□□□ -1.57
BRCA1-220ENST00000492859 C8orf48Q96LL4 319 aa5.25□□□□□ -1.57
BRCA1-220ENST00000492859 AGBL1Q96MI9 1066 aa5.25□□□□□ -1.57
BRCA1-220ENST00000492859 ZHX3Q9H4I2 956 aa5.25□□□□□ -1.57
BRCA1-220ENST00000492859 AVENQ9NQS1 362 aaPredicted RBP5.25□□□□□ -1.57
BRCA1-220ENST00000492859 GEMIN8Q9NWZ8 242 aaKnown RBP5.25□□□□□ -1.57
BRCA1-220ENST00000492859 TTF2Q9UNY4 1162 aaKnown RBP5.25□□□□□ -1.57
BRCA1-220ENST00000492859 MRPL42Q9Y6G3 142 aaKnown RBP5.25□□□□□ -1.57
BRCA1-220ENST00000492859 ARHGAP33O14559 1287 aa5.24□□□□□ -1.57
BRCA1-220ENST00000492859 HIP1RO75146 1068 aa5.24□□□□□ -1.57
BRCA1-220ENST00000492859 RGS20O76081 388 aa5.24□□□□□ -1.57
BRCA1-220ENST00000492859 PEX19P40855 299 aa5.24□□□□□ -1.57
BRCA1-220ENST00000492859 ABL2P42684 1182 aa5.24□□□□□ -1.57
BRCA1-220ENST00000492859 ENOX2Q16206 610 aaKnown RBP5.24□□□□□ -1.57
BRCA1-220ENST00000492859 RUNDC1Q96C34 613 aa5.24□□□□□ -1.57
BRCA1-220ENST00000492859 MPHOSPH6Q99547 160 aaKnown RBP5.24□□□□□ -1.57
BRCA1-220ENST00000492859 SEZ6LQ9BYH1 1024 aa5.24□□□□□ -1.57
BRCA1-220ENST00000492859 ADAM33Q9BZ11 813 aa5.24□□□□□ -1.57
BRCA1-220ENST00000492859 PPP1R12CQ9BZL4 782 aa5.24□□□□□ -1.57
BRCA1-220ENST00000492859 RETREG1Q9H6L5 497 aa5.24□□□□□ -1.57
BRCA1-220ENST00000492859 AKAP2Q9Y2D5 859 aa5.24□□□□□ -1.57
BRCA1-220ENST00000492859 DIS3Q9Y2L1 958 aaKnown RBP5.24□□□□□ -1.57
BRCA1-220ENST00000492859 SOWAHDA6NJG2 315 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 IFRD1O00458 451 aaPredicted RBP5.23□□□□□ -1.57
BRCA1-220ENST00000492859 PPP1R12AO14974 1030 aaPredicted RBP5.23□□□□□ -1.57
BRCA1-220ENST00000492859 PDGFRBP09619 1106 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 RGS3P49796 1198 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 PSMC1P62191 440 aaKnown RBP5.23□□□□□ -1.57
BRCA1-220ENST00000492859 LONRF1Q17RB8 773 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 PPP4R3BQ5MIZ7 849 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 GJC2Q5T442 439 aaPredicted RBP5.23□□□□□ -1.57
BRCA1-220ENST00000492859 L1TD1Q5T7N2 865 aaKnown RBP5.23□□□□□ -1.57
BRCA1-220ENST00000492859 LARP1BQ659C4 914 aaKnown RBP5.23□□□□□ -1.57
BRCA1-220ENST00000492859 B4GALNT3Q6L9W6 998 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 ADGRD1Q6QNK2 874 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 BANK1Q8NDB2 785 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 BORCS6Q96GS4 357 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 REPIN1Q9BWE0 567 aaKnown RBP5.23□□□□□ -1.57
BRCA1-220ENST00000492859 ISY1Q9ULR0 285 aaKnown RBP5.23□□□□□ -1.57
BRCA1-220ENST00000492859 NOL7Q9UMY1 257 aaKnown RBP5.23□□□□□ -1.57
BRCA1-220ENST00000492859 SMC3Q9UQE7 1217 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 PCDHGA10Q9Y5H3 936 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 MRVI1Q9Y6F6 885 aa5.23□□□□□ -1.57
BRCA1-220ENST00000492859 AMPD3Q01432 767 aa5.22□□□□□ -1.57
BRCA1-220ENST00000492859 RBL2Q08999 1139 aa5.22□□□□□ -1.57
BRCA1-220ENST00000492859 PSMD2Q13200 908 aa5.22□□□□□ -1.57
BRCA1-220ENST00000492859 LDLRAD1Q5T700 205 aa5.22□□□□□ -1.57
BRCA1-220ENST00000492859 SLC43A3Q8NBI5 491 aa5.22□□□□□ -1.57
BRCA1-220ENST00000492859 MTMR14Q8NCE2 650 aa5.22□□□□□ -1.57
BRCA1-220ENST00000492859 RNF166Q96A37 237 aaPredicted RBP5.22□□□□□ -1.57
BRCA1-220ENST00000492859 ARMC5Q96C12 935 aa5.22□□□□□ -1.57
BRCA1-220ENST00000492859 ARPC5LQ9BPX5 153 aa5.22□□□□□ -1.57
BRCA1-220ENST00000492859 CXorf56Q9H5V9 222 aa5.22□□□□□ -1.57
BRCA1-220ENST00000492859 ANAPC4Q9UJX5 808 aa5.22□□□□□ -1.57
BRCA1-220ENST00000492859 THRAP3Q9Y2W1 955 aaKnown RBP5.22□□□□□ -1.57
BRCA1-220ENST00000492859 IPO8O15397 1037 aaKnown RBP5.21□□□□□ -1.57
BRCA1-220ENST00000492859 DNAJC6O75061 913 aa5.21□□□□□ -1.57
BRCA1-220ENST00000492859 RRM1P23921 792 aa5.21□□□□□ -1.57
BRCA1-220ENST00000492859 ANP32AP39687 249 aaKnown RBP5.21□□□□□ -1.57
BRCA1-220ENST00000492859 PBX2P40425 430 aa5.21□□□□□ -1.57
BRCA1-220ENST00000492859 PRIM1P49642 420 aaKnown RBP5.21□□□□□ -1.57
BRCA1-220ENST00000492859 ALDH1L2Q3SY69 923 aa5.21□□□□□ -1.57
BRCA1-220ENST00000492859 CCDC92Q53HC0 331 aaPredicted RBP5.21□□□□□ -1.57
BRCA1-220ENST00000492859 ODR4Q5SWX8 454 aa5.21□□□□□ -1.57
BRCA1-220ENST00000492859 CCSAPQ6IQ19 270 aaPredicted RBP5.21□□□□□ -1.57
BRCA1-220ENST00000492859 KANK3Q6NY19 840 aa5.21□□□□□ -1.57
BRCA1-220ENST00000492859 TSC1Q92574 1164 aa5.21□□□□□ -1.57
BRCA1-220ENST00000492859 IER2Q9BTL4 223 aa5.21□□□□□ -1.57
BRCA1-220ENST00000492859 GNL3Q9BVP2 549 aaKnown RBP eCLIP5.21□□□□□ -1.57
BRCA1-220ENST00000492859 LDHAL6BQ9BYZ2 381 aaPredicted RBP5.21□□□□□ -1.57
BRCA1-220ENST00000492859 ALDH8A1Q9H2A2 487 aaPredicted RBP5.21□□□□□ -1.57
BRCA1-220ENST00000492859 CHST12Q9NRB3 414 aa5.21□□□□□ -1.57
BRCA1-220ENST00000492859 DYTNA2CJ06 578 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 SCAMP3O14828 347 aaKnown RBP5.21□□□□□ -1.58
BRCA1-220ENST00000492859 HRO43593 1189 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 COL9A1P20849 921 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 LMOD1P29536 600 aaPredicted RBP5.21□□□□□ -1.58
BRCA1-220ENST00000492859 GNALP38405 381 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 SIM2Q14190 667 aaPredicted RBP5.21□□□□□ -1.58
BRCA1-220ENST00000492859 CDC37Q16543 378 aaPredicted RBP5.21□□□□□ -1.58
BRCA1-220ENST00000492859 FBXO31Q5XUX0 539 aaPredicted RBP5.21□□□□□ -1.58
BRCA1-220ENST00000492859 PPP1R18Q6NYC8 613 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 KRT77Q7Z794 578 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 METTL16Q86W50 562 aaKnown RBP5.21□□□□□ -1.58
BRCA1-220ENST00000492859 HSCBQ8IWL3 235 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 NGEFQ8N5V2 710 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 VPS37AQ8NEZ2 397 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 DDX12PQ92771 950 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 TSR2Q969E8 191 aaKnown RBP5.21□□□□□ -1.58
BRCA1-220ENST00000492859 YY1AP1Q9H869 796 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 LZTS1Q9Y250 596 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 SLC45A1Q9Y2W3 748 aa5.21□□□□□ -1.58
BRCA1-220ENST00000492859 PALM3A6NDB9 673 aaPredicted RBP5.2□□□□□ -1.58
BRCA1-220ENST00000492859 HMMRO75330 724 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 MTA2O94776 668 aa5.2□□□□□ -1.58
BRCA1-220ENST00000492859 FOSP01100 380 aaPredicted RBP5.2□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 200.5 ms