RNA–Protein interactions for RNA: ENST00000490993.5

NPHP3-208, Transcript of nephrocystin 3, humanhuman

TSL 5

Gene NPHP3, Length 5,197 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP3-208ENST00000490993 MPRIPQ6WCQ1 1025 aa8.92□□□□□ -0.98
NPHP3-208ENST00000490993 IFNL2Q8IZJ0 200 aa8.92□□□□□ -0.98
NPHP3-208ENST00000490993 RBM33Q96EV2 1170 aaKnown RBP8.92□□□□□ -0.98
NPHP3-208ENST00000490993 TECPR2O15040 1411 aa8.92□□□□□ -0.98
NPHP3-208ENST00000490993 KIF3AQ9Y496 699 aa8.92□□□□□ -0.98
NPHP3-208ENST00000490993 F6X3S4 739 aa8.92□□□□□ -0.98
NPHP3-208ENST00000490993 GCP02774 474 aa8.92□□□□□ -0.98
NPHP3-208ENST00000490993 CCDC9Q9Y3X0 531 aaKnown RBP8.92□□□□□ -0.98
NPHP3-208ENST00000490993 MX1P20591 662 aa8.92□□□□□ -0.98
NPHP3-208ENST00000490993 DCTPP1Q9H773 170 aa8.92□□□□□ -0.98
NPHP3-208ENST00000490993 ARHGEF28Q8N1W1 1705 aaKnown RBP8.92□□□□□ -0.98
NPHP3-208ENST00000490993 CDC42BPGQ6DT37 1551 aa8.92□□□□□ -0.98
NPHP3-208ENST00000490993 NPHP1O15259 732 aa8.91□□□□□ -0.98
NPHP3-208ENST00000490993 ZRSR1Q15695 479 aaKnown RBP8.91□□□□□ -0.98
NPHP3-208ENST00000490993 GZF1Q9H116 711 aaPredicted RBP8.91□□□□□ -0.98
NPHP3-208ENST00000490993 PTCH1Q13635 1447 aa8.91□□□□□ -0.98
NPHP3-208ENST00000490993 ABCC4O15439 1325 aa8.91□□□□□ -0.98
NPHP3-208ENST00000490993 PHF14O94880 888 aa8.91□□□□□ -0.98
NPHP3-208ENST00000490993 TTC22Q5TAA0 569 aa8.91□□□□□ -0.98
NPHP3-208ENST00000490993 IFT172Q9UG01 1749 aa8.91□□□□□ -0.98
NPHP3-208ENST00000490993 ZNF853P0CG23 659 aa8.91□□□□□ -0.98
NPHP3-208ENST00000490993 NPHP4O75161 1426 aaPredicted RBP8.91□□□□□ -0.98
NPHP3-208ENST00000490993 NAP1L2Q9ULW6 460 aaPredicted RBP8.9□□□□□ -0.98
NPHP3-208ENST00000490993 PSMA5P28066 241 aa8.9□□□□□ -0.98
NPHP3-208ENST00000490993 KIF6Q6ZMV9 814 aa8.9□□□□□ -0.98
NPHP3-208ENST00000490993 LRRFIP2Q9Y608 721 aaKnown RBP8.9□□□□□ -0.98
NPHP3-208ENST00000490993 ALDH1L1O75891 902 aa8.9□□□□□ -0.99
NPHP3-208ENST00000490993 PTMAP06454 111 aaKnown RBP8.9□□□□□ -0.99
NPHP3-208ENST00000490993 FMNL2Q96PY5 1086 aa8.9□□□□□ -0.99
NPHP3-208ENST00000490993 EXOC6BQ9Y2D4 811 aa8.9□□□□□ -0.99
NPHP3-208ENST00000490993 IQSEC2Q5JU85 1478 aa8.9□□□□□ -0.99
NPHP3-208ENST00000490993 IGSF1Q8N6C5 1336 aa8.9□□□□□ -0.99
NPHP3-208ENST00000490993 ATP8B2P98198 1209 aa8.89□□□□□ -0.99
NPHP3-208ENST00000490993 HSP90B1P14625 803 aaKnown RBP8.89□□□□□ -0.99
NPHP3-208ENST00000490993 CEP85Q6P2H3 762 aa8.89□□□□□ -0.99
NPHP3-208ENST00000490993 NOL8Q76FK4 1167 aaKnown RBP8.89□□□□□ -0.99
NPHP3-208ENST00000490993 MEIS3Q99687 375 aa8.89□□□□□ -0.99
NPHP3-208ENST00000490993 DDX49Q9Y6V7 483 aaKnown RBP8.89□□□□□ -0.99
NPHP3-208ENST00000490993 MYOM1P52179 1685 aa8.89□□□□□ -0.99
NPHP3-208ENST00000490993 TBC1D9Q6ZT07 1266 aa8.89□□□□□ -0.99
NPHP3-208ENST00000490993 GLRX3O76003 335 aaKnown RBP8.89□□□□□ -0.99
NPHP3-208ENST00000490993 STRN4Q9NRL3 753 aa8.89□□□□□ -0.99
NPHP3-208ENST00000490993 USP31Q70CQ4 1352 aa8.88□□□□□ -0.99
NPHP3-208ENST00000490993 MYL6BP14649 208 aa8.88□□□□□ -0.99
NPHP3-208ENST00000490993 SMARCA5O60264 1052 aaPredicted RBP8.88□□□□□ -0.99
NPHP3-208ENST00000490993 NEK4P51957 841 aa8.88□□□□□ -0.99
NPHP3-208ENST00000490993 FSD1Q9BTV5 496 aa8.88□□□□□ -0.99
NPHP3-208ENST00000490993 TBC1D2Q9BYX2 928 aa8.88□□□□□ -0.99
NPHP3-208ENST00000490993 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.88□□□□□ -0.99
NPHP3-208ENST00000490993 RNMTO43148 476 aaKnown RBP8.88□□□□□ -0.99
NPHP3-208ENST00000490993 FRAT2O75474 233 aaPredicted RBP8.88□□□□□ -0.99
NPHP3-208ENST00000490993 ADAMTS13Q76LX8 1427 aa8.88□□□□□ -0.99
NPHP3-208ENST00000490993 SNRPA1P09661 255 aaKnown RBP8.87□□□□□ -0.99
NPHP3-208ENST00000490993 MAP3K2Q9Y2U5 619 aa8.87□□□□□ -0.99
NPHP3-208ENST00000490993 DIP2AQ14689 1571 aa8.87□□□□□ -0.99
NPHP3-208ENST00000490993 PI4KAP2A4QPH2 592 aa8.87□□□□□ -0.99
NPHP3-208ENST00000490993 AACSQ86V21 672 aa8.87□□□□□ -0.99
NPHP3-208ENST00000490993 PI4KAP1Q8N8J0 262 aa8.87□□□□□ -0.99
NPHP3-208ENST00000490993 KSR2Q6VAB6 950 aa8.86□□□□□ -0.99
NPHP3-208ENST00000490993 DDX54Q8TDD1 881 aaKnown RBP8.86□□□□□ -0.99
NPHP3-208ENST00000490993 SNX21Q969T3 373 aa8.86□□□□□ -0.99
NPHP3-208ENST00000490993 CHPF2Q9P2E5 772 aa8.86□□□□□ -0.99
NPHP3-208ENST00000490993 ISY1Q9ULR0 285 aaKnown RBP8.86□□□□□ -0.99
NPHP3-208ENST00000490993 KRT24Q2M2I5 525 aa8.86□□□□□ -0.99
NPHP3-208ENST00000490993 IL1RAPL2Q9NP60 686 aa8.86□□□□□ -0.99
NPHP3-208ENST00000490993 SMC3Q9UQE7 1217 aa8.86□□□□□ -0.99
NPHP3-208ENST00000490993 LRRC7Q96NW7 1537 aa8.86□□□□□ -0.99
NPHP3-208ENST00000490993 LRRC59Q96AG4 307 aaKnown RBP8.86□□□□□ -0.99
NPHP3-208ENST00000490993 TEX13AQ9BXU3 409 aaPredicted RBP8.86□□□□□ -0.99
NPHP3-208ENST00000490993 PPP1R42Q7Z4L9 355 aa8.86□□□□□ -0.99
NPHP3-208ENST00000490993 SYTL4Q96C24 671 aaPredicted RBP8.86□□□□□ -0.99
NPHP3-208ENST00000490993 TRAK2O60296 914 aa8.85□□□□□ -0.99
NPHP3-208ENST00000490993 NEUROD6Q96NK8 337 aa8.85□□□□□ -0.99
NPHP3-208ENST00000490993 ORAI2Q96SN7 254 aa8.85□□□□□ -0.99
NPHP3-208ENST00000490993 PDIA4P13667 645 aaKnown RBP8.85□□□□□ -0.99
NPHP3-208ENST00000490993 DCAF5Q96JK2 942 aa8.85□□□□□ -0.99
NPHP3-208ENST00000490993 CPS1P31327 1500 aa8.85□□□□□ -0.99
NPHP3-208ENST00000490993 STARD3NLO95772 234 aa8.85□□□□□ -0.99
NPHP3-208ENST00000490993 PDE1AP54750 535 aa8.85□□□□□ -0.99
NPHP3-208ENST00000490993 NUTM1Q86Y26 1132 aa8.85□□□□□ -0.99
NPHP3-208ENST00000490993 PLEKHM2Q8IWE5 1019 aa8.85□□□□□ -0.99
NPHP3-208ENST00000490993 TMOD3Q9NYL9 352 aa8.85□□□□□ -0.99
NPHP3-208ENST00000490993 MCM4P33991 863 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 ANKRD1Q15327 319 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 MYD88Q99836 296 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 NBPF6Q5VWK0 638 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 NBPF4Q96M43 638 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 RBM42Q9BTD8 480 aaKnown RBP8.84□□□□□ -0.99
NPHP3-208ENST00000490993 GOLGA6L6A8MZA4 724 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 MSNP26038 577 aaKnown RBP8.84□□□□□ -0.99
NPHP3-208ENST00000490993 GTF2E1P29083 439 aaPredicted RBP8.84□□□□□ -0.99
NPHP3-208ENST00000490993 TPRNQ4KMQ1 711 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 SDSP20132 328 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 FAM184AQ8NB25 1140 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 RHPN1Q8TCX5 695 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 ZSCAN31Q96LW9 406 aaPredicted RBP8.84□□□□□ -0.99
NPHP3-208ENST00000490993 ADGRL3Q9HAR2 1447 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 CYP46A1Q9Y6A2 500 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 SIGLEC1Q9BZZ2 1709 aa8.84□□□□□ -0.99
NPHP3-208ENST00000490993 CCDC158Q5M9N0 1113 aa8.84□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 118 ms