RNA–Protein interactions for RNA: ENST00000490808.1

HDAC3-210, Transcript of histone deacetylase 3, humanhuman

TSL 3

Gene HDAC3, Length 605 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC3-210ENST00000490808 HSP90AB1P08238 724 aaKnown RBP13.19□□□□□ -0.3
HDAC3-210ENST00000490808 PDE3AQ14432 1141 aa13.19□□□□□ -0.3
HDAC3-210ENST00000490808 RTF1Q92541 710 aaKnown RBP13.19□□□□□ -0.3
HDAC3-210ENST00000490808 IFT57Q9NWB7 429 aa13.19□□□□□ -0.3
HDAC3-210ENST00000490808 PPP1R1BQ9UD71 204 aaPredicted RBP13.19□□□□□ -0.3
HDAC3-210ENST00000490808 SHANK3Q9BYB0 1731 aa13.19□□□□□ -0.3
HDAC3-210ENST00000490808 DLG5Q8TDM6 1919 aa13.18□□□□□ -0.3
HDAC3-210ENST00000490808 HTATSF1O43719 755 aaKnown RBP13.18□□□□□ -0.3
HDAC3-210ENST00000490808 TRIM37O94972 964 aa13.18□□□□□ -0.3
HDAC3-210ENST00000490808 CAMKK2Q96RR4 588 aa13.18□□□□□ -0.3
HDAC3-210ENST00000490808 RGPD3A6NKT7 1758 aaPredicted RBP13.17□□□□□ -0.3
HDAC3-210ENST00000490808 RGPD4Q7Z3J3 1758 aa13.17□□□□□ -0.3
HDAC3-210ENST00000490808 APBA3O96018 575 aa13.17□□□□□ -0.3
HDAC3-210ENST00000490808 IFNL2Q8IZJ0 200 aa13.17□□□□□ -0.3
HDAC3-210ENST00000490808 USHBP1Q8N6Y0 703 aa13.17□□□□□ -0.3
HDAC3-210ENST00000490808 PHACTR3Q96KR7 559 aa13.17□□□□□ -0.3
HDAC3-210ENST00000490808 FANCIQ9NVI1 1328 aa13.16□□□□□ -0.3
HDAC3-210ENST00000490808 RREB1Q92766 1687 aa13.16□□□□□ -0.3
HDAC3-210ENST00000490808 IPO8O15397 1037 aaKnown RBP13.16□□□□□ -0.3
HDAC3-210ENST00000490808 RARSP54136 660 aaKnown RBP13.16□□□□□ -0.3
HDAC3-210ENST00000490808 NKX1-1Q15270 411 aaPredicted RBP13.16□□□□□ -0.3
HDAC3-210ENST00000490808 NBPF14Q5TI25 921 aa13.16□□□□□ -0.3
HDAC3-210ENST00000490808 MARCH10Q8NA82 808 aaPredicted RBP13.16□□□□□ -0.3
HDAC3-210ENST00000490808 CFAP44Q96MT7 982 aa13.16□□□□□ -0.3
HDAC3-210ENST00000490808 NHSQ6T4R5 1651 aa13.15□□□□□ -0.3
HDAC3-210ENST00000490808 ALDH1L2Q3SY69 923 aa13.15□□□□□ -0.3
HDAC3-210ENST00000490808 BCL11BQ9C0K0 894 aaPredicted RBP13.15□□□□□ -0.3
HDAC3-210ENST00000490808 LAS1LQ9Y4W2 734 aaKnown RBP13.15□□□□□ -0.3
HDAC3-210ENST00000490808 NUP188Q5SRE5 1749 aa13.15□□□□□ -0.3
HDAC3-210ENST00000490808 PLIN1O60240 522 aa13.14□□□□□ -0.31
HDAC3-210ENST00000490808 EXOSC9Q06265 439 aaKnown RBP13.14□□□□□ -0.31
HDAC3-210ENST00000490808 C1orf141Q5JVX7 400 aa13.14□□□□□ -0.31
HDAC3-210ENST00000490808 EXOC6Q8TAG9 804 aa13.14□□□□□ -0.31
HDAC3-210ENST00000490808 KIF16BQ96L93 1317 aa13.13□□□□□ -0.31
HDAC3-210ENST00000490808 B4GALNT3Q6L9W6 998 aa13.13□□□□□ -0.31
HDAC3-210ENST00000490808 DCAF5Q96JK2 942 aa13.13□□□□□ -0.31
HDAC3-210ENST00000490808 CHMP4BQ9H444 224 aaKnown RBP13.13□□□□□ -0.31
HDAC3-210ENST00000490808 SPON1Q9HCB6 807 aa13.13□□□□□ -0.31
HDAC3-210ENST00000490808 VIRMAQ69YN4 1812 aaKnown RBP13.13□□□□□ -0.31
HDAC3-210ENST00000490808 PLSCR1O15162 318 aa13.12□□□□□ -0.31
HDAC3-210ENST00000490808 BCAR3O75815 825 aa13.12□□□□□ -0.31
HDAC3-210ENST00000490808 AKAP4Q5JQC9 854 aa13.12□□□□□ -0.31
HDAC3-210ENST00000490808 ZKSCAN2Q63HK3 967 aa13.12□□□□□ -0.31
HDAC3-210ENST00000490808 AEBP1Q8IUX7 1158 aa13.12□□□□□ -0.31
HDAC3-210ENST00000490808 DDX54Q8TDD1 881 aaKnown RBP13.12□□□□□ -0.31
HDAC3-210ENST00000490808 TSR2Q969E8 191 aaKnown RBP13.12□□□□□ -0.31
HDAC3-210ENST00000490808 CRBNQ96SW2 442 aa13.12□□□□□ -0.31
HDAC3-210ENST00000490808 CHMP4AQ9BY43 222 aa13.12□□□□□ -0.31
HDAC3-210ENST00000490808 SCN11AQ9UI33 1791 aa13.12□□□□□ -0.31
HDAC3-210ENST00000490808 ITGB4P16144 1822 aa13.11□□□□□ -0.31
HDAC3-210ENST00000490808 GNAT3A8MTJ3 354 aa13.11□□□□□ -0.31
HDAC3-210ENST00000490808 ERVV-2B6SEH9 535 aa13.11□□□□□ -0.31
HDAC3-210ENST00000490808 CYP27B1O15528 508 aa13.11□□□□□ -0.31
HDAC3-210ENST00000490808 KCNQ2O43526 872 aa13.11□□□□□ -0.31
HDAC3-210ENST00000490808 ZNF853P0CG23 659 aa13.11□□□□□ -0.31
HDAC3-210ENST00000490808 PHKG2P15735 406 aa13.11□□□□□ -0.31
HDAC3-210ENST00000490808 ZNF530Q6P9A1 599 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-210ENST00000490808 FRAT1Q92837 279 aaPredicted RBP13.11□□□□□ -0.31
HDAC3-210ENST00000490808 SMC4Q9NTJ3 1288 aa13.11□□□□□ -0.31
HDAC3-210ENST00000490808 BABAM1Q9NWV8 329 aa13.11□□□□□ -0.31
HDAC3-210ENST00000490808 DOT1LQ8TEK3 1739 aa13.1□□□□□ -0.31
HDAC3-210ENST00000490808 BTAF1O14981 1849 aa13.09□□□□□ -0.31
HDAC3-210ENST00000490808 BRPF1P55201 1214 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-210ENST00000490808 MTHFSDQ2M296 383 aaKnown RBP13.09□□□□□ -0.31
HDAC3-210ENST00000490808 FTSJ3Q8IY81 847 aaKnown RBP13.09□□□□□ -0.31
HDAC3-210ENST00000490808 SOS1Q07889 1333 aaPredicted RBP13.09□□□□□ -0.31
HDAC3-210ENST00000490808 ADAMTS7Q9UKP4 1686 aa13.08□□□□□ -0.31
HDAC3-210ENST00000490808 SMARCC1Q92922 1105 aaPredicted RBP13.08□□□□□ -0.32
HDAC3-210ENST00000490808 MBIPQ9NS73 344 aa13.08□□□□□ -0.32
HDAC3-210ENST00000490808 MAP3K5Q99683 1374 aa13.07□□□□□ -0.32
HDAC3-210ENST00000490808 CHL1O00533 1208 aa13.07□□□□□ -0.32
HDAC3-210ENST00000490808 TWISTNBQ3B726 338 aaPredicted RBP13.07□□□□□ -0.32
HDAC3-210ENST00000490808 DZIP1LQ8IYY4 767 aaKnown RBP13.07□□□□□ -0.32
HDAC3-210ENST00000490808 ZNF784Q8NCA9 323 aaPredicted RBP13.07□□□□□ -0.32
HDAC3-210ENST00000490808 ARHGAP45Q92619 1136 aa13.07□□□□□ -0.32
HDAC3-210ENST00000490808 IFFO2Q5TF58 517 aa13.06□□□□□ -0.32
HDAC3-210ENST00000490808 TMOD3Q9NYL9 352 aa13.06□□□□□ -0.32
HDAC3-210ENST00000490808 TOGARAM1Q9Y4F4 1720 aa13.05□□□□□ -0.32
HDAC3-210ENST00000490808 MRC1P22897 1456 aa13.05□□□□□ -0.32
HDAC3-210ENST00000490808 VAMP4O75379 141 aa13.05□□□□□ -0.32
HDAC3-210ENST00000490808 SLC27A3Q5K4L6 730 aa13.05□□□□□ -0.32
HDAC3-210ENST00000490808 C20orf194Q5TEA3 1177 aa13.05□□□□□ -0.32
HDAC3-210ENST00000490808 ATF7IPQ6VMQ6 1270 aa13.05□□□□□ -0.32
HDAC3-210ENST00000490808 CENPQQ7L2Z9 268 aaPredicted RBP13.05□□□□□ -0.32
HDAC3-210ENST00000490808 MCM10Q7L590 875 aa13.05□□□□□ -0.32
HDAC3-210ENST00000490808 SSH1Q8WYL5 1049 aa13.05□□□□□ -0.32
HDAC3-210ENST00000490808 THUMPD2Q9BTF0 503 aaKnown RBP13.05□□□□□ -0.32
HDAC3-210ENST00000490808 ZNF831Q5JPB2 1677 aa13.05□□□□□ -0.32
HDAC3-210ENST00000490808 PRIM1P49642 420 aaKnown RBP13.04□□□□□ -0.32
HDAC3-210ENST00000490808 TSPYL4Q9UJ04 414 aa13.04□□□□□ -0.32
HDAC3-210ENST00000490808 DDX19BQ9UMR2 479 aa13.04□□□□□ -0.32
HDAC3-210ENST00000490808 LY75O60449 1722 aa13.04□□□□□ -0.32
HDAC3-210ENST00000490808 DCTN1Q14203 1278 aa13.03□□□□□ -0.32
HDAC3-210ENST00000490808 TAF7Q15545 349 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-210ENST00000490808 CLUAP1Q96AJ1 413 aa13.03□□□□□ -0.32
HDAC3-210ENST00000490808 SYTL4Q96C24 671 aaPredicted RBP13.03□□□□□ -0.32
HDAC3-210ENST00000490808 BCL2L13Q9BXK5 485 aa13.03□□□□□ -0.32
HDAC3-210ENST00000490808 API5Q9BZZ5 524 aaKnown RBP13.03□□□□□ -0.32
HDAC3-210ENST00000490808 CEMIPQ8WUJ3 1361 aa13.03□□□□□ -0.32
HDAC3-210ENST00000490808 KDM6AO15550 1401 aaPredicted RBP13.03□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms