RNA–Protein interactions for RNA: ENST00000489961.1

VPS13D-210, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 443 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-210ENST00000489961 SMARCC1Q92922 1105 aaPredicted RBP14.33□□□□□ -0.12
VPS13D-210ENST00000489961 CAMKK2Q96RR4 588 aa14.33□□□□□ -0.12
VPS13D-210ENST00000489961 SLC52A2Q9HAB3 445 aa14.33□□□□□ -0.12
VPS13D-210ENST00000489961 LY75O60449 1722 aa14.32□□□□□ -0.12
VPS13D-210ENST00000489961 MCM10Q7L590 875 aa14.32□□□□□ -0.12
VPS13D-210ENST00000489961 RREB1Q92766 1687 aa14.32□□□□□ -0.12
VPS13D-210ENST00000489961 CEMIPQ8WUJ3 1361 aa14.32□□□□□ -0.12
VPS13D-210ENST00000489961 NEUROD2Q15784 382 aa14.31□□□□□ -0.12
VPS13D-210ENST00000489961 RRP7AQ9Y3A4 280 aaKnown RBP14.31□□□□□ -0.12
VPS13D-210ENST00000489961 SIPA1L3O60292 1781 aaPredicted RBP14.31□□□□□ -0.12
VPS13D-210ENST00000489961 PALLDQ8WX93 1383 aa14.31□□□□□ -0.12
VPS13D-210ENST00000489961 APAF1O14727 1248 aa14.3□□□□□ -0.12
VPS13D-210ENST00000489961 DCTN1Q14203 1278 aa14.3□□□□□ -0.12
VPS13D-210ENST00000489961 TXNRD1Q16881 649 aa14.3□□□□□ -0.12
VPS13D-210ENST00000489961 ATG3Q9NT62 314 aa14.3□□□□□ -0.12
VPS13D-210ENST00000489961 ASAP1Q9ULH1 1129 aa14.3□□□□□ -0.12
VPS13D-210ENST00000489961 SLC27A3Q5K4L6 730 aa14.29□□□□□ -0.12
VPS13D-210ENST00000489961 PAPPAQ13219 1627 aa14.29□□□□□ -0.12
VPS13D-210ENST00000489961 NUP188Q5SRE5 1749 aa14.29□□□□□ -0.12
VPS13D-210ENST00000489961 HMGB2P26583 209 aaKnown RBP14.28□□□□□ -0.12
VPS13D-210ENST00000489961 PROM2Q8N271 834 aa14.27□□□□□ -0.13
VPS13D-210ENST00000489961 CCNL1Q9UK58 526 aaPredicted RBP14.27□□□□□ -0.13
VPS13D-210ENST00000489961 LOC102724428A0A0B4J2F2 783 aa14.26□□□□□ -0.13
VPS13D-210ENST00000489961 BTBD11A6QL63 1104 aa14.26□□□□□ -0.13
VPS13D-210ENST00000489961 SIK1P57059 783 aa14.26□□□□□ -0.13
VPS13D-210ENST00000489961 TAF7Q15545 349 aaPredicted RBP14.26□□□□□ -0.13
VPS13D-210ENST00000489961 TTC5Q8N0Z6 440 aa14.26□□□□□ -0.13
VPS13D-210ENST00000489961 RBM42Q9BTD8 480 aaKnown RBP14.26□□□□□ -0.13
VPS13D-210ENST00000489961 THUMPD2Q9BTF0 503 aaKnown RBP14.26□□□□□ -0.13
VPS13D-210ENST00000489961 TRIM35Q9UPQ4 493 aa14.26□□□□□ -0.13
VPS13D-210ENST00000489961 ZNF831Q5JPB2 1677 aa14.26□□□□□ -0.13
VPS13D-210ENST00000489961 UBR2Q8IWV8 1755 aa14.25□□□□□ -0.13
VPS13D-210ENST00000489961 SLC39A6Q13433 755 aa14.25□□□□□ -0.13
VPS13D-210ENST00000489961 NBPF14Q5TI25 921 aa14.25□□□□□ -0.13
VPS13D-210ENST00000489961 TAF1LQ8IZX4 1826 aa14.25□□□□□ -0.13
VPS13D-210ENST00000489961 C5P01031 1676 aa14.24□□□□□ -0.13
VPS13D-210ENST00000489961 PTCD1O75127 700 aaKnown RBP14.24□□□□□ -0.13
VPS13D-210ENST00000489961 CALD1Q05682 793 aaKnown RBP14.24□□□□□ -0.13
VPS13D-210ENST00000489961 NCBP3Q53F19 620 aaKnown RBP14.24□□□□□ -0.13
VPS13D-210ENST00000489961 ZNF790Q6PG37 636 aa14.24□□□□□ -0.13
VPS13D-210ENST00000489961 NGEFQ8N5V2 710 aa14.24□□□□□ -0.13
VPS13D-210ENST00000489961 LRRC4BQ9NT99 713 aa14.24□□□□□ -0.13
VPS13D-210ENST00000489961 ATP6V1AP38606 617 aa14.23□□□□□ -0.13
VPS13D-210ENST00000489961 KCNQ4P56696 695 aa14.23□□□□□ -0.13
VPS13D-210ENST00000489961 CCDC27Q2M243 656 aa14.23□□□□□ -0.13
VPS13D-210ENST00000489961 KDM3BQ7LBC6 1761 aa14.22□□□□□ -0.13
VPS13D-210ENST00000489961 KCPQ6ZWJ8 1503 aa14.22□□□□□ -0.13
VPS13D-210ENST00000489961 SENP3-EIF4A1A0A087X0R7 540 aa14.22□□□□□ -0.13
VPS13D-210ENST00000489961 BABAM1Q9NWV8 329 aa14.22□□□□□ -0.13
VPS13D-210ENST00000489961 STK32BQ9NY57 414 aa14.22□□□□□ -0.13
VPS13D-210ENST00000489961 CICQ96RK0 1608 aaPredicted RBP14.22□□□□□ -0.13
VPS13D-210ENST00000489961 FMNL2Q96PY5 1086 aa14.21□□□□□ -0.13
VPS13D-210ENST00000489961 TSPYL4Q9UJ04 414 aa14.21□□□□□ -0.13
VPS13D-210ENST00000489961 TJP1Q07157 1748 aa14.21□□□□□ -0.14
VPS13D-210ENST00000489961 ITPK1Q13572 414 aa14.2□□□□□ -0.14
VPS13D-210ENST00000489961 VSIG10Q8N0Z9 540 aa14.2□□□□□ -0.14
VPS13D-210ENST00000489961 ZNF496Q96IT1 587 aaPredicted RBP14.2□□□□□ -0.14
VPS13D-210ENST00000489961 SLC4A9Q96Q91 983 aa14.2□□□□□ -0.14
VPS13D-210ENST00000489961 MIS18AQ9NYP9 233 aa14.2□□□□□ -0.14
VPS13D-210ENST00000489961 SALL2Q9Y467 1007 aaPredicted RBP14.2□□□□□ -0.14
VPS13D-210ENST00000489961 LAS1LQ9Y4W2 734 aaKnown RBP14.2□□□□□ -0.14
VPS13D-210ENST00000489961 C4BP0C0L5 1744 aa14.2□□□□□ -0.14
VPS13D-210ENST00000489961 COL5A3P25940 1745 aaPredicted RBP14.2□□□□□ -0.14
VPS13D-210ENST00000489961 HEG1Q9ULI3 1381 aa14.2□□□□□ -0.14
VPS13D-210ENST00000489961 KCNQ3O43525 872 aa14.19□□□□□ -0.14
VPS13D-210ENST00000489961 WWC1Q8IX03 1113 aa14.19□□□□□ -0.14
VPS13D-210ENST00000489961 ANO8Q9HCE9 1232 aaPredicted RBP14.19□□□□□ -0.14
VPS13D-210ENST00000489961 GNAI1P63096 354 aa14.18□□□□□ -0.14
VPS13D-210ENST00000489961 SLC15A2Q16348 729 aa14.18□□□□□ -0.14
VPS13D-210ENST00000489961 LINC00116Q8NCU8 138 aa14.18□□□□□ -0.14
VPS13D-210ENST00000489961 AK7Q96M32 723 aa14.18□□□□□ -0.14
VPS13D-210ENST00000489961 CFAP44Q96MT7 982 aa14.18□□□□□ -0.14
VPS13D-210ENST00000489961 TEX13AQ9BXU3 409 aaPredicted RBP14.18□□□□□ -0.14
VPS13D-210ENST00000489961 IFT57Q9NWB7 429 aa14.18□□□□□ -0.14
VPS13D-210ENST00000489961 QSER1Q2KHR3 1735 aa14.18□□□□□ -0.14
VPS13D-210ENST00000489961 CHL1O00533 1208 aa14.17□□□□□ -0.14
VPS13D-210ENST00000489961 R3HDM1Q15032 1099 aaKnown RBP14.17□□□□□ -0.14
VPS13D-210ENST00000489961 ZNF827Q17R98 1081 aa14.17□□□□□ -0.14
VPS13D-210ENST00000489961 DNAJC10Q8IXB1 793 aa14.17□□□□□ -0.14
VPS13D-210ENST00000489961 AKT1S1Q96B36 256 aa14.17□□□□□ -0.14
VPS13D-210ENST00000489961 CNTNAP4Q9C0A0 1308 aa14.16□□□□□ -0.14
VPS13D-210ENST00000489961 STARD3NLO95772 234 aa14.16□□□□□ -0.14
VPS13D-210ENST00000489961 SNRPA1P09661 255 aaKnown RBP14.16□□□□□ -0.14
VPS13D-210ENST00000489961 EIF4A1P60842 406 aaKnown RBP14.16□□□□□ -0.14
VPS13D-210ENST00000489961 RC3H1Q5TC82 1133 aaKnown RBP14.16□□□□□ -0.14
VPS13D-210ENST00000489961 WDR63Q8IWG1 891 aa14.16□□□□□ -0.14
VPS13D-210ENST00000489961 TFCP2L1Q9NZI6 479 aa14.16□□□□□ -0.14
VPS13D-210ENST00000489961 IL16Q14005 1332 aa14.15□□□□□ -0.14
VPS13D-210ENST00000489961 TUBGCP6Q96RT7 1819 aa14.15□□□□□ -0.14
VPS13D-210ENST00000489961 LAMB4A4D0S4 1761 aa14.15□□□□□ -0.14
VPS13D-210ENST00000489961 PSDA5PKW4 1024 aaPredicted RBP14.15□□□□□ -0.14
VPS13D-210ENST00000489961 ZNF853P0CG23 659 aa14.15□□□□□ -0.14
VPS13D-210ENST00000489961 UBR3Q6ZT12 1888 aa14.14□□□□□ -0.15
VPS13D-210ENST00000489961 CYP19A1P11511 503 aaPredicted RBP14.14□□□□□ -0.15
VPS13D-210ENST00000489961 CRKLP46109 303 aaKnown RBP14.14□□□□□ -0.15
VPS13D-210ENST00000489961 MBIPQ9NS73 344 aa14.14□□□□□ -0.15
VPS13D-210ENST00000489961 MYH14Q7Z406 1995 aaKnown RBP14.13□□□□□ -0.15
VPS13D-210ENST00000489961 GNPATO15228 680 aa14.13□□□□□ -0.15
VPS13D-210ENST00000489961 GIGYF1O75420 1035 aaPredicted RBP14.13□□□□□ -0.15
VPS13D-210ENST00000489961 FLAD1Q8NFF5 587 aa14.13□□□□□ -0.15
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms