RNA–Protein interactions for RNA: ENST00000489378.5

SSBP1-212, Transcript of single stranded DNA binding protein 1, humanhuman

TSL 2

Gene SSBP1, Length 1,434 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SSBP1-212ENST00000489378 C5P01031 1676 aa13.29□□□□□ -0.28
SSBP1-212ENST00000489378 USP31Q70CQ4 1352 aa13.29□□□□□ -0.28
SSBP1-212ENST00000489378 SLC24A1O60721 1099 aa13.29□□□□□ -0.28
SSBP1-212ENST00000489378 NME9Q86XW9 330 aa13.29□□□□□ -0.28
SSBP1-212ENST00000489378 SUGP2Q8IX01 1082 aaKnown RBP eCLIP13.29□□□□□ -0.28
SSBP1-212ENST00000489378 USP47Q96K76 1375 aa13.28□□□□□ -0.28
SSBP1-212ENST00000489378 USP54Q70EL1 1684 aa13.28□□□□□ -0.28
SSBP1-212ENST00000489378 TTLL13PA6NNM8 815 aa13.28□□□□□ -0.28
SSBP1-212ENST00000489378 AMIGO3Q86WK7 504 aa13.28□□□□□ -0.28
SSBP1-212ENST00000489378 MON2Q7Z3U7 1717 aa13.27□□□□□ -0.28
SSBP1-212ENST00000489378 SMIM5Q71RC9 77 aa13.27□□□□□ -0.29
SSBP1-212ENST00000489378 LTV1Q96GA3 475 aaPredicted RBP13.27□□□□□ -0.29
SSBP1-212ENST00000489378 TAF1LQ8IZX4 1826 aa13.26□□□□□ -0.29
SSBP1-212ENST00000489378 FLAD1Q8NFF5 587 aa13.26□□□□□ -0.29
SSBP1-212ENST00000489378 RBM46Q8TBY0 533 aaKnown RBP13.26□□□□□ -0.29
SSBP1-212ENST00000489378 PCDHB13Q9Y5F0 798 aa13.26□□□□□ -0.29
SSBP1-212ENST00000489378 TOGARAM1Q9Y4F4 1720 aa13.26□□□□□ -0.29
SSBP1-212ENST00000489378 FBXO3Q9UK99 471 aa13.25□□□□□ -0.29
SSBP1-212ENST00000489378 IFNL1Q8IU54 200 aa13.24□□□□□ -0.29
SSBP1-212ENST00000489378 ZCRB1Q8TBF4 217 aaKnown RBP13.24□□□□□ -0.29
SSBP1-212ENST00000489378 FAM212AQ96EL1 285 aa13.24□□□□□ -0.29
SSBP1-212ENST00000489378 MEGF6O75095 1541 aa13.24□□□□□ -0.29
SSBP1-212ENST00000489378 FAM208AQ9UK61 1670 aaKnown RBP13.24□□□□□ -0.29
SSBP1-212ENST00000489378 PHF14O94880 888 aa13.23□□□□□ -0.29
SSBP1-212ENST00000489378 SLC34A2O95436 690 aa13.23□□□□□ -0.29
SSBP1-212ENST00000489378 IP6K1Q92551 441 aa13.23□□□□□ -0.29
SSBP1-212ENST00000489378 SBNO2Q9Y2G9 1366 aa13.23□□□□□ -0.29
SSBP1-212ENST00000489378 UBR3Q6ZT12 1888 aa13.23□□□□□ -0.29
SSBP1-212ENST00000489378 RGPD2P0DJD1 1756 aa13.23□□□□□ -0.29
SSBP1-212ENST00000489378 C4BP0C0L5 1744 aa13.23□□□□□ -0.29
SSBP1-212ENST00000489378 PXDNLA1KZ92 1463 aa13.22□□□□□ -0.29
SSBP1-212ENST00000489378 PALLDQ8WX93 1383 aa13.22□□□□□ -0.29
SSBP1-212ENST00000489378 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP13.22□□□□□ -0.29
SSBP1-212ENST00000489378 AK7Q96M32 723 aa13.22□□□□□ -0.29
SSBP1-212ENST00000489378 KIAA1551Q9HCM1 1747 aa13.21□□□□□ -0.29
SSBP1-212ENST00000489378 CD163L1Q9NR16 1453 aa13.21□□□□□ -0.29
SSBP1-212ENST00000489378 N4BP2Q86UW6 1770 aaPredicted RBP13.21□□□□□ -0.3
SSBP1-212ENST00000489378 FSTL1Q12841 308 aa13.21□□□□□ -0.3
SSBP1-212ENST00000489378 ARHGAP27Q6ZUM4 889 aa13.21□□□□□ -0.3
SSBP1-212ENST00000489378 C16orf71Q8IYS4 520 aaPredicted RBP13.21□□□□□ -0.3
SSBP1-212ENST00000489378 BCS1LQ9Y276 419 aa13.21□□□□□ -0.3
SSBP1-212ENST00000489378 COLQQ9Y215 455 aaPredicted RBP13.2□□□□□ -0.3
SSBP1-212ENST00000489378 KIF13BQ9NQT8 1826 aa13.19□□□□□ -0.3
SSBP1-212ENST00000489378 HSPA1AP0DMV8 641 aaKnown RBP13.19□□□□□ -0.3
SSBP1-212ENST00000489378 HSPA1BP0DMV9 641 aaKnown RBP13.19□□□□□ -0.3
SSBP1-212ENST00000489378 A0A0G2JLW4 131 aa13.18□□□□□ -0.3
SSBP1-212ENST00000489378 KCPQ6ZWJ8 1503 aa13.17□□□□□ -0.3
SSBP1-212ENST00000489378 C9orf131Q5VYM1 1079 aa13.17□□□□□ -0.3
SSBP1-212ENST00000489378 MPRIPQ6WCQ1 1025 aa13.17□□□□□ -0.3
SSBP1-212ENST00000489378 TRIM35Q9UPQ4 493 aa13.17□□□□□ -0.3
SSBP1-212ENST00000489378 MMP10P09238 476 aa13.16□□□□□ -0.3
SSBP1-212ENST00000489378 HOXC9P31274 260 aa13.16□□□□□ -0.3
SSBP1-212ENST00000489378 VASPP50552 380 aaPredicted RBP13.16□□□□□ -0.3
SSBP1-212ENST00000489378 MAP3K19Q56UN5 1328 aa13.16□□□□□ -0.3
SSBP1-212ENST00000489378 FBLN1P23142 703 aa13.15□□□□□ -0.3
SSBP1-212ENST00000489378 HMGB2P26583 209 aaKnown RBP13.15□□□□□ -0.3
SSBP1-212ENST00000489378 SSFA2P28290 1259 aa13.15□□□□□ -0.3
SSBP1-212ENST00000489378 MAMSTRQ6ZN01 415 aa13.15□□□□□ -0.3
SSBP1-212ENST00000489378 USHBP1Q8N6Y0 703 aa13.15□□□□□ -0.3
SSBP1-212ENST00000489378 LINC00116Q8NCU8 138 aa13.15□□□□□ -0.3
SSBP1-212ENST00000489378 RRAGCQ9HB90 399 aa13.15□□□□□ -0.3
SSBP1-212ENST00000489378 PKD1L3Q7Z443 1732 aa13.15□□□□□ -0.3
SSBP1-212ENST00000489378 ITGB4P16144 1822 aa13.15□□□□□ -0.31
SSBP1-212ENST00000489378 EDC4Q6P2E9 1401 aaKnown RBP13.15□□□□□ -0.31
SSBP1-212ENST00000489378 NSD3Q9BZ95 1437 aa13.15□□□□□ -0.31
SSBP1-212ENST00000489378 FCHSD2O94868 740 aa13.14□□□□□ -0.31
SSBP1-212ENST00000489378 DPEP1P16444 411 aa13.14□□□□□ -0.31
SSBP1-212ENST00000489378 TGFB2P61812 414 aa13.14□□□□□ -0.31
SSBP1-212ENST00000489378 DCAF8Q5TAQ9 597 aa13.14□□□□□ -0.31
SSBP1-212ENST00000489378 NBPF6Q5VWK0 638 aa13.14□□□□□ -0.31
SSBP1-212ENST00000489378 TMC1Q8TDI8 760 aa13.14□□□□□ -0.31
SSBP1-212ENST00000489378 NBPF4Q96M43 638 aa13.14□□□□□ -0.31
SSBP1-212ENST00000489378 BRCA1P38398 1863 aaKnown RBP13.14□□□□□ -0.31
SSBP1-212ENST00000489378 PLEKHG2Q9H7P9 1386 aa13.14□□□□□ -0.31
SSBP1-212ENST00000489378 SLC12A5Q9H2X9 1139 aa13.13□□□□□ -0.31
SSBP1-212ENST00000489378 MAP2P11137 1827 aaKnown RBP13.13□□□□□ -0.31
SSBP1-212ENST00000489378 KDM2BQ8NHM5 1336 aa13.13□□□□□ -0.31
SSBP1-212ENST00000489378 C10orf71Q711Q0 1435 aa13.13□□□□□ -0.31
SSBP1-212ENST00000489378 AMPHP49418 695 aa13.13□□□□□ -0.31
SSBP1-212ENST00000489378 IER5LQ5T953 404 aa13.13□□□□□ -0.31
SSBP1-212ENST00000489378 HDGFL2Q7Z4V5 671 aaPredicted RBP13.13□□□□□ -0.31
SSBP1-212ENST00000489378 SMC1BQ8NDV3 1235 aa13.13□□□□□ -0.31
SSBP1-212ENST00000489378 SMARCC1Q92922 1105 aaPredicted RBP13.13□□□□□ -0.31
SSBP1-212ENST00000489378 CGNL1Q0VF96 1302 aa13.12□□□□□ -0.31
SSBP1-212ENST00000489378 GNPATO15228 680 aa13.12□□□□□ -0.31
SSBP1-212ENST00000489378 RAPGEF4Q8WZA2 1011 aa13.12□□□□□ -0.31
SSBP1-212ENST00000489378 PIGBQ92521 554 aa13.12□□□□□ -0.31
SSBP1-212ENST00000489378 PCDH11XQ9BZA7 1347 aa13.11□□□□□ -0.31
SSBP1-212ENST00000489378 PCDH11YQ9BZA8 1340 aa13.11□□□□□ -0.31
SSBP1-212ENST00000489378 TNRC6CQ9HCJ0 1690 aaKnown RBP13.11□□□□□ -0.31
SSBP1-212ENST00000489378 A0A1W2PP64 1363 aa13.11□□□□□ -0.31
SSBP1-212ENST00000489378 ARFGEF1Q9Y6D6 1849 aa13.11□□□□□ -0.31
SSBP1-212ENST00000489378 CYP27B1O15528 508 aa13.11□□□□□ -0.31
SSBP1-212ENST00000489378 PYGBP11216 843 aa13.11□□□□□ -0.31
SSBP1-212ENST00000489378 ROCK2O75116 1388 aaKnown RBP13.1□□□□□ -0.31
SSBP1-212ENST00000489378 LOC102724428A0A0B4J2F2 783 aa13.1□□□□□ -0.31
SSBP1-212ENST00000489378 TATP17735 454 aaPredicted RBP13.1□□□□□ -0.31
SSBP1-212ENST00000489378 KCNA3P22001 575 aa13.1□□□□□ -0.31
SSBP1-212ENST00000489378 SIK1P57059 783 aa13.1□□□□□ -0.31
SSBP1-212ENST00000489378 ITPK1Q13572 414 aa13.1□□□□□ -0.31
Retrieved 100 of 20,778 RNA–protein pairs in 74.1 ms