RNA–Protein interactions for RNA: ENST00000488454.5

SKA1-204, Transcript of spindle and kinetochore associated complex subunit 1, humanhuman

TSL 3 BASIC

Gene SKA1, Length 669 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA1-204ENST00000488454 AMOTQ4VCS5 1084 aa13.65□□□□□ -0.22
SKA1-204ENST00000488454 PNISRQ8TF01 805 aaKnown RBP13.65□□□□□ -0.22
SKA1-204ENST00000488454 TMEM106CQ9BVX2 250 aa13.65□□□□□ -0.22
SKA1-204ENST00000488454 ADAMTS8Q9UP79 889 aa13.65□□□□□ -0.22
SKA1-204ENST00000488454 FAM9BQ8IZU0 186 aa13.64□□□□□ -0.23
SKA1-204ENST00000488454 DDX54Q8TDD1 881 aaKnown RBP13.64□□□□□ -0.23
SKA1-204ENST00000488454 RNF25Q96BH1 459 aaPredicted RBP13.64□□□□□ -0.23
SKA1-204ENST00000488454 RSPH6AQ9H0K4 717 aa13.64□□□□□ -0.23
SKA1-204ENST00000488454 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.64□□□□□ -0.23
SKA1-204ENST00000488454 MAPK8IP3Q9UPT6 1336 aa13.64□□□□□ -0.23
SKA1-204ENST00000488454 FAM208AQ9UK61 1670 aaKnown RBP13.63□□□□□ -0.23
SKA1-204ENST00000488454 KDRP35968 1356 aa13.63□□□□□ -0.23
SKA1-204ENST00000488454 KRT27Q7Z3Y8 459 aa13.62□□□□□ -0.23
SKA1-204ENST00000488454 NCAPD2Q15021 1401 aa13.62□□□□□ -0.23
SKA1-204ENST00000488454 GLI3P10071 1580 aa13.62□□□□□ -0.23
SKA1-204ENST00000488454 C1orf141Q5JVX7 400 aa13.61□□□□□ -0.23
SKA1-204ENST00000488454 GAS2L2Q8NHY3 880 aa13.61□□□□□ -0.23
SKA1-204ENST00000488454 DISP2A7MBM2 1401 aa13.61□□□□□ -0.23
SKA1-204ENST00000488454 PLEKHG2Q9H7P9 1386 aa13.6□□□□□ -0.23
SKA1-204ENST00000488454 OVOS2A0A0G2JMS6 1433 aa13.6□□□□□ -0.23
SKA1-204ENST00000488454 PSEN1P49768 467 aa13.6□□□□□ -0.23
SKA1-204ENST00000488454 PDAP1Q13442 181 aaKnown RBP13.6□□□□□ -0.23
SKA1-204ENST00000488454 ZNF530Q6P9A1 599 aaPredicted RBP13.6□□□□□ -0.23
SKA1-204ENST00000488454 CCDC146Q8IYE0 955 aa13.6□□□□□ -0.23
SKA1-204ENST00000488454 IFNL2Q8IZJ0 200 aa13.6□□□□□ -0.23
SKA1-204ENST00000488454 RUNDC1Q96C34 613 aa13.6□□□□□ -0.23
SKA1-204ENST00000488454 PCDH11XQ9BZA7 1347 aa13.6□□□□□ -0.23
SKA1-204ENST00000488454 PCDH11YQ9BZA8 1340 aa13.6□□□□□ -0.23
SKA1-204ENST00000488454 MEGF6O75095 1541 aa13.59□□□□□ -0.23
SKA1-204ENST00000488454 RIOK3O14730 519 aaKnown RBP13.59□□□□□ -0.23
SKA1-204ENST00000488454 HSP90AB1P08238 724 aaKnown RBP13.59□□□□□ -0.23
SKA1-204ENST00000488454 MTHFSDQ2M296 383 aaKnown RBP13.59□□□□□ -0.23
SKA1-204ENST00000488454 PHACTR3Q96KR7 559 aa13.59□□□□□ -0.23
SKA1-204ENST00000488454 PLEKHF1Q96S99 279 aa13.59□□□□□ -0.23
SKA1-204ENST00000488454 RGPD2P0DJD1 1756 aa13.58□□□□□ -0.23
SKA1-204ENST00000488454 AKAP4Q5JQC9 854 aa13.58□□□□□ -0.24
SKA1-204ENST00000488454 MARCH10Q8NA82 808 aaPredicted RBP13.58□□□□□ -0.24
SKA1-204ENST00000488454 TRIM35Q9UPQ4 493 aa13.58□□□□□ -0.24
SKA1-204ENST00000488454 RGS12O14924 1447 aa13.57□□□□□ -0.24
SKA1-204ENST00000488454 RGPD1P0DJD0 1748 aa13.57□□□□□ -0.24
SKA1-204ENST00000488454 PHKG2P15735 406 aa13.57□□□□□ -0.24
SKA1-204ENST00000488454 FAM196AQ6ZSG2 479 aa13.57□□□□□ -0.24
SKA1-204ENST00000488454 TNS2Q63HR2 1409 aa13.56□□□□□ -0.24
SKA1-204ENST00000488454 GNAT3A8MTJ3 354 aa13.56□□□□□ -0.24
SKA1-204ENST00000488454 CYP27B1O15528 508 aa13.56□□□□□ -0.24
SKA1-204ENST00000488454 NFE2L2Q16236 605 aa13.56□□□□□ -0.24
SKA1-204ENST00000488454 SLC39A7Q92504 469 aa13.56□□□□□ -0.24
SKA1-204ENST00000488454 RTF1Q92541 710 aaKnown RBP13.56□□□□□ -0.24
SKA1-204ENST00000488454 FAM182BQ5T319 152 aa13.55□□□□□ -0.24
SKA1-204ENST00000488454 APAF1O14727 1248 aa13.54□□□□□ -0.24
SKA1-204ENST00000488454 RGL2O15211 777 aa13.54□□□□□ -0.24
SKA1-204ENST00000488454 TMPOP42166 694 aaKnown RBP13.54□□□□□ -0.24
SKA1-204ENST00000488454 RIPK4P57078 832 aa13.54□□□□□ -0.24
SKA1-204ENST00000488454 NKX1-1Q15270 411 aaPredicted RBP13.54□□□□□ -0.24
SKA1-204ENST00000488454 NEUROD2Q15784 382 aa13.54□□□□□ -0.24
SKA1-204ENST00000488454 DCAF5Q96JK2 942 aa13.54□□□□□ -0.24
SKA1-204ENST00000488454 METRNQ9UJH8 293 aa13.54□□□□□ -0.24
SKA1-204ENST00000488454 THSD7AQ9UPZ6 1657 aa13.53□□□□□ -0.24
SKA1-204ENST00000488454 PARP4Q9UKK3 1724 aaKnown RBP13.53□□□□□ -0.24
SKA1-204ENST00000488454 HTATSF1O43719 755 aaKnown RBP13.53□□□□□ -0.24
SKA1-204ENST00000488454 C7P10643 843 aa13.53□□□□□ -0.24
SKA1-204ENST00000488454 LMOD3Q0VAK6 560 aa13.53□□□□□ -0.24
SKA1-204ENST00000488454 MPRIPQ6WCQ1 1025 aa13.53□□□□□ -0.24
SKA1-204ENST00000488454 CABP4P57796 275 aa13.52□□□□□ -0.25
SKA1-204ENST00000488454 SYTL4Q96C24 671 aaPredicted RBP13.52□□□□□ -0.25
SKA1-204ENST00000488454 ACSBG1Q96GR2 724 aa13.52□□□□□ -0.25
SKA1-204ENST00000488454 RRP7AQ9Y3A4 280 aaKnown RBP13.52□□□□□ -0.25
SKA1-204ENST00000488454 MAP3K5Q99683 1374 aa13.51□□□□□ -0.25
SKA1-204ENST00000488454 LRRC37A3O60309 1634 aa13.5□□□□□ -0.25
SKA1-204ENST00000488454 ERVV-2B6SEH9 535 aa13.5□□□□□ -0.25
SKA1-204ENST00000488454 RNMTO43148 476 aaKnown RBP13.5□□□□□ -0.25
SKA1-204ENST00000488454 PRIM1P49642 420 aaKnown RBP13.5□□□□□ -0.25
SKA1-204ENST00000488454 LGR6Q9HBX8 967 aa13.5□□□□□ -0.25
SKA1-204ENST00000488454 TRIM37O94972 964 aa13.49□□□□□ -0.25
SKA1-204ENST00000488454 TEFQ10587 303 aa13.49□□□□□ -0.25
SKA1-204ENST00000488454 SF3B2Q13435 895 aaKnown RBP13.49□□□□□ -0.25
SKA1-204ENST00000488454 NGEFQ8N5V2 710 aa13.49□□□□□ -0.25
SKA1-204ENST00000488454 BCL11BQ9C0K0 894 aaPredicted RBP13.49□□□□□ -0.25
SKA1-204ENST00000488454 TMOD3Q9NYL9 352 aa13.49□□□□□ -0.25
SKA1-204ENST00000488454 SALL2Q9Y467 1007 aaPredicted RBP13.49□□□□□ -0.25
SKA1-204ENST00000488454 BCL9O00512 1426 aa13.48□□□□□ -0.25
SKA1-204ENST00000488454 WNK3Q9BYP7 1800 aa13.48□□□□□ -0.25
SKA1-204ENST00000488454 DCTN1Q14203 1278 aa13.48□□□□□ -0.25
SKA1-204ENST00000488454 IER5LQ5T953 404 aa13.48□□□□□ -0.25
SKA1-204ENST00000488454 MCM10Q7L590 875 aa13.48□□□□□ -0.25
SKA1-204ENST00000488454 IL17REQ8NFR9 667 aa13.48□□□□□ -0.25
SKA1-204ENST00000488454 SENP3-EIF4A1A0A087X0R7 540 aa13.47□□□□□ -0.25
SKA1-204ENST00000488454 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP13.47□□□□□ -0.25
SKA1-204ENST00000488454 KCNQ2O43526 872 aa13.47□□□□□ -0.25
SKA1-204ENST00000488454 CALD1Q05682 793 aaKnown RBP13.47□□□□□ -0.25
SKA1-204ENST00000488454 CCDC125Q86Z20 511 aa13.47□□□□□ -0.25
SKA1-204ENST00000488454 NFATC2IPQ8NCF5 419 aa13.47□□□□□ -0.25
SKA1-204ENST00000488454 ZFP91Q96JP5 570 aaPredicted RBP13.47□□□□□ -0.25
SKA1-204ENST00000488454 PKD1L3Q7Z443 1732 aa13.47□□□□□ -0.25
SKA1-204ENST00000488454 SLC52A2Q9HAB3 445 aa13.46□□□□□ -0.25
SKA1-204ENST00000488454 APBA3O96018 575 aa13.45□□□□□ -0.26
SKA1-204ENST00000488454 TAF7Q15545 349 aaPredicted RBP13.45□□□□□ -0.26
SKA1-204ENST00000488454 CCDC27Q2M243 656 aa13.45□□□□□ -0.26
SKA1-204ENST00000488454 PIGBQ92521 554 aa13.45□□□□□ -0.26
SKA1-204ENST00000488454 TAOK2Q9UL54 1235 aa13.45□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms