RNA–Protein interactions for RNA: ENST00000487017.5

COL7A1-210, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 5,807 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-210ENST00000487017 NSD2O96028 1365 aa19.29■□□□□ 0.68
COL7A1-210ENST00000487017 UBAC1Q9BSL1 405 aa19.29■□□□□ 0.68
COL7A1-210ENST00000487017 DDX54Q8TDD1 881 aaKnown RBP19.29■□□□□ 0.68
COL7A1-210ENST00000487017 RDXP35241 583 aaKnown RBP19.28■□□□□ 0.68
COL7A1-210ENST00000487017 TDO2P48775 406 aa19.28■□□□□ 0.68
COL7A1-210ENST00000487017 KIF2AO00139 706 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-210ENST00000487017 TBC1D9Q6ZT07 1266 aa19.28■□□□□ 0.68
COL7A1-210ENST00000487017 PLB1Q6P1J6 1458 aa19.28■□□□□ 0.68
COL7A1-210ENST00000487017 CCDC191Q8NCU4 936 aa19.28■□□□□ 0.68
COL7A1-210ENST00000487017 TSPYL1Q9H0U9 437 aa19.28■□□□□ 0.68
COL7A1-210ENST00000487017 U3KPZ7 1027 aaPredicted RBP19.28■□□□□ 0.68
COL7A1-210ENST00000487017 ADGRF5Q8IZF2 1346 aa19.28■□□□□ 0.68
COL7A1-210ENST00000487017 PTPRCP08575 1304 aa19.27■□□□□ 0.68
COL7A1-210ENST00000487017 SYCP1Q15431 976 aa19.27■□□□□ 0.68
COL7A1-210ENST00000487017 WAPLQ7Z5K2 1190 aa19.27■□□□□ 0.68
COL7A1-210ENST00000487017 TAF7Q15545 349 aaPredicted RBP19.27■□□□□ 0.68
COL7A1-210ENST00000487017 LIMCH1Q9UPQ0 1083 aa19.27■□□□□ 0.68
COL7A1-210ENST00000487017 GOLGA6L10A6NI86 522 aa19.27■□□□□ 0.67
COL7A1-210ENST00000487017 ERLIN2O94905 339 aa19.27■□□□□ 0.67
COL7A1-210ENST00000487017 CFAP100Q494V2 611 aa19.27■□□□□ 0.67
COL7A1-210ENST00000487017 ANO10Q9NW15 660 aa19.27■□□□□ 0.67
COL7A1-210ENST00000487017 SOGA3Q5TF21 947 aa19.26■□□□□ 0.67
COL7A1-210ENST00000487017 NME9Q86XW9 330 aa19.26■□□□□ 0.67
COL7A1-210ENST00000487017 PAF1Q8N7H5 531 aa19.26■□□□□ 0.67
COL7A1-210ENST00000487017 TANGO6Q9C0B7 1094 aa19.26■□□□□ 0.67
COL7A1-210ENST00000487017 F6X3S4 739 aa19.26■□□□□ 0.67
COL7A1-210ENST00000487017 EMILIN1Q9Y6C2 1016 aa19.26■□□□□ 0.67
COL7A1-210ENST00000487017 AEBP2Q6ZN18 517 aaPredicted RBP19.26■□□□□ 0.67
COL7A1-210ENST00000487017 PTPN14Q15678 1187 aa19.25■□□□□ 0.67
COL7A1-210ENST00000487017 UBXN4Q92575 508 aa19.25■□□□□ 0.67
COL7A1-210ENST00000487017 IQCEQ6IPM2 695 aa19.25■□□□□ 0.67
COL7A1-210ENST00000487017 BOLA2Q9H3K6 86 aa19.25■□□□□ 0.67
COL7A1-210ENST00000487017 CEP131Q9UPN4 1083 aa19.25■□□□□ 0.67
COL7A1-210ENST00000487017 SFPQP23246 707 aaKnown RBP eCLIP19.25■□□□□ 0.67
COL7A1-210ENST00000487017 LARP1Q6PKG0 1096 aaKnown RBP19.25■□□□□ 0.67
COL7A1-210ENST00000487017 LRRFIP2Q9Y608 721 aaKnown RBP19.25■□□□□ 0.67
COL7A1-210ENST00000487017 KCNH5Q8NCM2 988 aa19.24■□□□□ 0.67
COL7A1-210ENST00000487017 EPB41L2O43491 1005 aaKnown RBP19.24■□□□□ 0.67
COL7A1-210ENST00000487017 XPCQ01831 940 aaPredicted RBP19.24■□□□□ 0.67
COL7A1-210ENST00000487017 IDH1O75874 414 aaKnown RBP19.24■□□□□ 0.67
COL7A1-210ENST00000487017 MAPKBP1O60336 1514 aa19.23■□□□□ 0.67
COL7A1-210ENST00000487017 AIDAQ96BJ3 306 aa19.23■□□□□ 0.67
COL7A1-210ENST00000487017 IL16Q14005 1332 aa19.23■□□□□ 0.67
COL7A1-210ENST00000487017 BAG4O95429 457 aaKnown RBP19.23■□□□□ 0.67
COL7A1-210ENST00000487017 HMGB1P09429 215 aaKnown RBP19.22■□□□□ 0.67
COL7A1-210ENST00000487017 ATP2B2Q01814 1243 aa19.22■□□□□ 0.67
COL7A1-210ENST00000487017 ARHGAP29Q52LW3 1261 aa19.22■□□□□ 0.67
COL7A1-210ENST00000487017 USP25Q9UHP3 1055 aa19.22■□□□□ 0.67
COL7A1-210ENST00000487017 AKAP2Q9Y2D5 859 aa19.22■□□□□ 0.67
COL7A1-210ENST00000487017 PHF23Q9BUL5 403 aaPredicted RBP19.22■□□□□ 0.67
COL7A1-210ENST00000487017 DNAAF4Q8WXU2 420 aa19.22■□□□□ 0.67
COL7A1-210ENST00000487017 ZHX3Q9H4I2 956 aa19.22■□□□□ 0.67
COL7A1-210ENST00000487017 CLIP2Q9UDT6 1046 aa19.21■□□□□ 0.67
COL7A1-210ENST00000487017 CTAGE5O15320 804 aa19.21■□□□□ 0.67
COL7A1-210ENST00000487017 ZSCAN12O43309 604 aa19.21■□□□□ 0.67
COL7A1-210ENST00000487017 KIAA0754O94854 1291 aa19.21■□□□□ 0.67
COL7A1-210ENST00000487017 TTC22Q5TAA0 569 aa19.21■□□□□ 0.67
COL7A1-210ENST00000487017 RAI14Q9P0K7 980 aa19.21■□□□□ 0.67
COL7A1-210ENST00000487017 HDAC1Q13547 482 aaPredicted RBP19.21■□□□□ 0.67
COL7A1-210ENST00000487017 PLCD4Q9BRC7 762 aa19.21■□□□□ 0.67
COL7A1-210ENST00000487017 LRP2BPQ9P2M1 347 aa19.2■□□□□ 0.66
COL7A1-210ENST00000487017 KLHL40Q2TBA0 621 aa19.2■□□□□ 0.66
COL7A1-210ENST00000487017 KIF18AQ8NI77 898 aa19.2■□□□□ 0.66
COL7A1-210ENST00000487017 TMCO3Q6UWJ1 677 aa19.2■□□□□ 0.66
COL7A1-210ENST00000487017 ANKLE2Q86XL3 938 aa19.2■□□□□ 0.66
COL7A1-210ENST00000487017 MCM5P33992 734 aa19.2■□□□□ 0.66
COL7A1-210ENST00000487017 DDX19AQ9NUU7 478 aaKnown RBP19.2■□□□□ 0.66
COL7A1-210ENST00000487017 MYD88Q99836 296 aa19.19■□□□□ 0.66
COL7A1-210ENST00000487017 SPINK5Q9NQ38 1064 aaPredicted RBP19.19■□□□□ 0.66
COL7A1-210ENST00000487017 C8orf76Q96K31 380 aa19.19■□□□□ 0.66
COL7A1-210ENST00000487017 BMP2KQ9NSY1 1161 aaPredicted RBP19.19■□□□□ 0.66
COL7A1-210ENST00000487017 NEFHP12036 1026 aa19.19■□□□□ 0.66
COL7A1-210ENST00000487017 EIF5P55010 431 aaKnown RBP19.19■□□□□ 0.66
COL7A1-210ENST00000487017 NUCB1Q02818 461 aa19.19■□□□□ 0.66
COL7A1-210ENST00000487017 FLIIQ13045 1269 aa19.19■□□□□ 0.66
COL7A1-210ENST00000487017 CCDC85AQ96PX6 553 aaPredicted RBP19.19■□□□□ 0.66
COL7A1-210ENST00000487017 CCDC8Q9H0W5 538 aaPredicted RBP19.19■□□□□ 0.66
COL7A1-210ENST00000487017 IFIT1P09914 478 aaKnown RBP19.19■□□□□ 0.66
COL7A1-210ENST00000487017 METTL24Q5JXM2 366 aa19.19■□□□□ 0.66
COL7A1-210ENST00000487017 KIAA1328Q86T90 577 aa19.19■□□□□ 0.66
COL7A1-210ENST00000487017 CCDC102AQ96A19 550 aa19.19■□□□□ 0.66
COL7A1-210ENST00000487017 NOS1P29475 1434 aa19.18■□□□□ 0.66
COL7A1-210ENST00000487017 RALGAPBQ86X10 1494 aa19.18■□□□□ 0.66
COL7A1-210ENST00000487017 STX6O43752 255 aa19.18■□□□□ 0.66
COL7A1-210ENST00000487017 AMOTQ4VCS5 1084 aa19.18■□□□□ 0.66
COL7A1-210ENST00000487017 MBIPQ9NS73 344 aa19.18■□□□□ 0.66
COL7A1-210ENST00000487017 EVI5LQ96CN4 794 aa19.18■□□□□ 0.66
COL7A1-210ENST00000487017 PRDM11Q9NQV5 511 aa19.18■□□□□ 0.66
COL7A1-210ENST00000487017 ADGRL1O94910 1474 aa19.18■□□□□ 0.66
COL7A1-210ENST00000487017 GJB2P29033 226 aa19.18■□□□□ 0.66
COL7A1-210ENST00000487017 CKAP2LQ8IYA6 745 aa19.18■□□□□ 0.66
COL7A1-210ENST00000487017 CCDC148Q8NFR7 591 aa19.18■□□□□ 0.66
COL7A1-210ENST00000487017 FAM193AP78312 1265 aa19.17■□□□□ 0.66
COL7A1-210ENST00000487017 WASLO00401 505 aaPredicted RBP19.17■□□□□ 0.66
COL7A1-210ENST00000487017 ANKRD36BQ8N2N9 1353 aa19.17■□□□□ 0.66
COL7A1-210ENST00000487017 IGHMBP2P38935 993 aaKnown RBP19.17■□□□□ 0.66
COL7A1-210ENST00000487017 DHX37Q8IY37 1157 aaKnown RBP19.17■□□□□ 0.66
COL7A1-210ENST00000487017 GDPD2Q9HCC8 539 aa19.17■□□□□ 0.66
COL7A1-210ENST00000487017 GBP3Q9H0R5 595 aa19.17■□□□□ 0.66
COL7A1-210ENST00000487017 NEMFO60524 1076 aa19.16■□□□□ 0.66
Retrieved 100 of 20,778 RNA–protein pairs in 103.3 ms