RNA–Protein interactions for RNA: ENST00000484246.5

UPF3A-208, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 3

Gene UPF3A, Length 699 nt, Biotype processed transcript.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-208ENST00000484246 CCNL1Q9UK58 526 aaPredicted RBP21.12■□□□□ 0.97
UPF3A-208ENST00000484246 ASAP1Q9ULH1 1129 aa21.12■□□□□ 0.97
UPF3A-208ENST00000484246 HTATSF1O43719 755 aaKnown RBP21.11■□□□□ 0.97
UPF3A-208ENST00000484246 R3HDM1Q15032 1099 aaKnown RBP21.11■□□□□ 0.97
UPF3A-208ENST00000484246 LGR6Q9HBX8 967 aa21.11■□□□□ 0.97
UPF3A-208ENST00000484246 NEFMP07197 916 aa21.1■□□□□ 0.97
UPF3A-208ENST00000484246 STK32BQ9NY57 414 aa21.1■□□□□ 0.97
UPF3A-208ENST00000484246 ZNF831Q5JPB2 1677 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 LOC102724428A0A0B4J2F2 783 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 SIK1P57059 783 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 SLC15A2Q16348 729 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 NFATC2IPQ8NCF5 419 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 IL17REQ8NFR9 667 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 AKT1S1Q96B36 256 aa21.09■□□□□ 0.97
UPF3A-208ENST00000484246 PSDA5PKW4 1024 aaPredicted RBP21.08■□□□□ 0.97
UPF3A-208ENST00000484246 WDR43Q15061 677 aaKnown RBP eCLIP21.08■□□□□ 0.97
UPF3A-208ENST00000484246 CICQ96RK0 1608 aaPredicted RBP21.07■□□□□ 0.96
UPF3A-208ENST00000484246 MAPK8IP3Q9UPT6 1336 aa21.07■□□□□ 0.96
UPF3A-208ENST00000484246 NFE2L2Q16236 605 aa21.07■□□□□ 0.96
UPF3A-208ENST00000484246 ZNF827Q17R98 1081 aa21.07■□□□□ 0.96
UPF3A-208ENST00000484246 CASZ1Q86V15 1759 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 C5P01031 1676 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 NPM3O75607 178 aaKnown RBP21.03■□□□□ 0.96
UPF3A-208ENST00000484246 KCNQ4P56696 695 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 TEFQ10587 303 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 RTF1Q92541 710 aaKnown RBP21.03■□□□□ 0.96
UPF3A-208ENST00000484246 SLC4A9Q96Q91 983 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 ADAMTS8Q9UP79 889 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 KCPQ6ZWJ8 1503 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 KAT6BQ8WYB5 2073 aa21.03■□□□□ 0.96
UPF3A-208ENST00000484246 QSER1Q2KHR3 1735 aa21.02■□□□□ 0.96
UPF3A-208ENST00000484246 ITPK1Q13572 414 aa21.02■□□□□ 0.96
UPF3A-208ENST00000484246 POTEDQ86YR6 584 aa21.02■□□□□ 0.96
UPF3A-208ENST00000484246 RUNDC1Q96C34 613 aa21.02■□□□□ 0.96
UPF3A-208ENST00000484246 LRP5O75197 1615 aa21.02■□□□□ 0.96
UPF3A-208ENST00000484246 SIPA1L3O60292 1781 aaPredicted RBP21.01■□□□□ 0.95
UPF3A-208ENST00000484246 CCDC184Q52MB2 194 aa21.01■□□□□ 0.95
UPF3A-208ENST00000484246 C4BP0C0L5 1744 aa21.01■□□□□ 0.95
UPF3A-208ENST00000484246 ATP6V1AP38606 617 aa21■□□□□ 0.95
UPF3A-208ENST00000484246 LINC00116Q8NCU8 138 aa21■□□□□ 0.95
UPF3A-208ENST00000484246 TMPOP42166 694 aaKnown RBP20.99■□□□□ 0.95
UPF3A-208ENST00000484246 MCM10Q7L590 875 aa20.99■□□□□ 0.95
UPF3A-208ENST00000484246 PNPLA7Q6ZV29 1317 aa20.99■□□□□ 0.95
UPF3A-208ENST00000484246 CNTNAP4Q9C0A0 1308 aa20.99■□□□□ 0.95
UPF3A-208ENST00000484246 LMOD3Q0VAK6 560 aa20.98■□□□□ 0.95
UPF3A-208ENST00000484246 VSIG10Q8N0Z9 540 aa20.98■□□□□ 0.95
UPF3A-208ENST00000484246 PNISRQ8TF01 805 aaKnown RBP20.98■□□□□ 0.95
UPF3A-208ENST00000484246 TAF1LQ8IZX4 1826 aa20.98■□□□□ 0.95
UPF3A-208ENST00000484246 UBR2Q8IWV8 1755 aa20.97■□□□□ 0.95
UPF3A-208ENST00000484246 SLC39A6Q13433 755 aa20.97■□□□□ 0.95
UPF3A-208ENST00000484246 RC3H1Q5TC82 1133 aaKnown RBP20.97■□□□□ 0.95
UPF3A-208ENST00000484246 ZNF790Q6PG37 636 aa20.97■□□□□ 0.95
UPF3A-208ENST00000484246 RBM42Q9BTD8 480 aaKnown RBP20.97■□□□□ 0.95
UPF3A-208ENST00000484246 MRS2Q9HD23 443 aa20.97■□□□□ 0.95
UPF3A-208ENST00000484246 TFCP2L1Q9NZI6 479 aa20.97■□□□□ 0.95
UPF3A-208ENST00000484246 PTCD1O75127 700 aaKnown RBP20.96■□□□□ 0.95
UPF3A-208ENST00000484246 DCTN1Q14203 1278 aa20.96■□□□□ 0.95
UPF3A-208ENST00000484246 CCDC146Q8IYE0 955 aa20.96■□□□□ 0.95
UPF3A-208ENST00000484246 VIRMAQ69YN4 1812 aaKnown RBP20.96■□□□□ 0.95
UPF3A-208ENST00000484246 COL5A3P25940 1745 aaPredicted RBP20.95■□□□□ 0.94
UPF3A-208ENST00000484246 TJP1Q07157 1748 aa20.95■□□□□ 0.94
UPF3A-208ENST00000484246 TTC5Q8N0Z6 440 aa20.95■□□□□ 0.94
UPF3A-208ENST00000484246 FLAD1Q8NFF5 587 aa20.95■□□□□ 0.94
UPF3A-208ENST00000484246 SLC16A10Q8TF71 515 aa20.95■□□□□ 0.94
UPF3A-208ENST00000484246 AK7Q96M32 723 aa20.95■□□□□ 0.94
UPF3A-208ENST00000484246 PDGFDQ9GZP0 370 aaPredicted RBP20.95■□□□□ 0.94
UPF3A-208ENST00000484246 BTBD11A6QL63 1104 aa20.94■□□□□ 0.94
UPF3A-208ENST00000484246 SSFA2P28290 1259 aa20.94■□□□□ 0.94
UPF3A-208ENST00000484246 RIPK4P57078 832 aa20.94■□□□□ 0.94
UPF3A-208ENST00000484246 HEG1Q9ULI3 1381 aa20.94■□□□□ 0.94
UPF3A-208ENST00000484246 TAF7Q15545 349 aaPredicted RBP20.93■□□□□ 0.94
UPF3A-208ENST00000484246 MTFR1LQ9H019 292 aa20.93■□□□□ 0.94
UPF3A-208ENST00000484246 TUBGCP6Q96RT7 1819 aa20.92■□□□□ 0.94
UPF3A-208ENST00000484246 ZNF496Q96IT1 587 aaPredicted RBP20.92■□□□□ 0.94
UPF3A-208ENST00000484246 FMNL2Q96PY5 1086 aa20.91■□□□□ 0.94
UPF3A-208ENST00000484246 SPON1Q9HCB6 807 aa20.91■□□□□ 0.94
UPF3A-208ENST00000484246 BABAM1Q9NWV8 329 aa20.91■□□□□ 0.94
UPF3A-208ENST00000484246 DLG5Q8TDM6 1919 aa20.9■□□□□ 0.94
UPF3A-208ENST00000484246 AMIGO3Q86WK7 504 aa20.9■□□□□ 0.94
UPF3A-208ENST00000484246 COL23A1Q86Y22 540 aaPredicted RBP20.9■□□□□ 0.94
UPF3A-208ENST00000484246 DNAJC10Q8IXB1 793 aa20.9■□□□□ 0.94
UPF3A-208ENST00000484246 RNF216Q9NWF9 866 aaPredicted RBP20.9■□□□□ 0.94
UPF3A-208ENST00000484246 TRIM35Q9UPQ4 493 aa20.9■□□□□ 0.94
UPF3A-208ENST00000484246 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP20.89■□□□□ 0.93
UPF3A-208ENST00000484246 GNPATO15228 680 aa20.89■□□□□ 0.93
UPF3A-208ENST00000484246 CYP19A1P11511 503 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-208ENST00000484246 SGIP1Q9BQI5 828 aa20.89■□□□□ 0.93
UPF3A-208ENST00000484246 THUMPD2Q9BTF0 503 aaKnown RBP20.89■□□□□ 0.93
UPF3A-208ENST00000484246 TEX13AQ9BXU3 409 aaPredicted RBP20.89■□□□□ 0.93
UPF3A-208ENST00000484246 UBR3Q6ZT12 1888 aa20.89■□□□□ 0.93
UPF3A-208ENST00000484246 KCNQ3O43525 872 aa20.88■□□□□ 0.93
UPF3A-208ENST00000484246 RPS6KA4O75676 772 aa20.88■□□□□ 0.93
UPF3A-208ENST00000484246 CRKLP46109 303 aaKnown RBP20.88■□□□□ 0.93
UPF3A-208ENST00000484246 RRP7AQ9Y3A4 280 aaKnown RBP20.88■□□□□ 0.93
UPF3A-208ENST00000484246 APAF1O14727 1248 aa20.87■□□□□ 0.93
UPF3A-208ENST00000484246 ZBTB7AO95365 584 aa20.87■□□□□ 0.93
UPF3A-208ENST00000484246 PTGER2P43116 358 aa20.87■□□□□ 0.93
UPF3A-208ENST00000484246 INTS5Q6P9B9 1019 aaKnown RBP20.87■□□□□ 0.93
UPF3A-208ENST00000484246 RTCBQ9Y3I0 505 aaKnown RBP20.87■□□□□ 0.93
UPF3A-208ENST00000484246 COL24A1Q17RW2 1714 aa20.87■□□□□ 0.93
Retrieved 100 of 20,778 RNA–protein pairs in 189 ms