RNA–Protein interactions for RNA: ENST00000481910.1

HPS4-212, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 2

Gene HPS4, Length 1,914 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-212ENST00000481910 LGR6Q9HBX8 967 aa15.17■□□□□ 0.02
HPS4-212ENST00000481910 IL17REQ8NFR9 667 aa15.16■□□□□ 0.02
HPS4-212ENST00000481910 RNMTO43148 476 aaKnown RBP15.15■□□□□ 0.02
HPS4-212ENST00000481910 CCDC27Q2M243 656 aa15.15■□□□□ 0.02
HPS4-212ENST00000481910 WWC1Q8IX03 1113 aa15.15■□□□□ 0.02
HPS4-212ENST00000481910 THUMPD2Q9BTF0 503 aaKnown RBP15.15■□□□□ 0.02
HPS4-212ENST00000481910 TULP1O00294 542 aaPredicted RBP15.14■□□□□ 0.01
HPS4-212ENST00000481910 VIRMAQ69YN4 1812 aaKnown RBP15.14■□□□□ 0.01
HPS4-212ENST00000481910 KDM6AO15550 1401 aaPredicted RBP15.13■□□□□ 0.01
HPS4-212ENST00000481910 SCN11AQ9UI33 1791 aa15.12■□□□□ 0.01
HPS4-212ENST00000481910 TEFQ10587 303 aa15.12■□□□□ 0.01
HPS4-212ENST00000481910 SYTL4Q96C24 671 aaPredicted RBP15.12■□□□□ 0.01
HPS4-212ENST00000481910 CEMIPQ8WUJ3 1361 aa15.12■□□□□ 0.01
HPS4-212ENST00000481910 ERVV-2B6SEH9 535 aa15.11■□□□□ 0.01
HPS4-212ENST00000481910 CABP4P57796 275 aa15.11■□□□□ 0.01
HPS4-212ENST00000481910 FAM196AQ6ZSG2 479 aa15.11■□□□□ 0.01
HPS4-212ENST00000481910 NFATC2IPQ8NCF5 419 aa15.11■□□□□ 0.01
HPS4-212ENST00000481910 ACSBG1Q96GR2 724 aa15.11■□□□□ 0.01
HPS4-212ENST00000481910 PRIM1P49642 420 aaKnown RBP15.11■□□□□ 0.01
HPS4-212ENST00000481910 CALD1Q05682 793 aaKnown RBP15.11■□□□□ 0.01
HPS4-212ENST00000481910 WDR63Q8IWG1 891 aa15.1■□□□□ 0.01
HPS4-212ENST00000481910 SLC52A2Q9HAB3 445 aa15.1■□□□□ 0.01
HPS4-212ENST00000481910 ADAMTS7Q9UKP4 1686 aa15.09■□□□□ 0.01
HPS4-212ENST00000481910 LAS1LQ9Y4W2 734 aaKnown RBP15.09■□□□□ 0.01
HPS4-212ENST00000481910 ZBED9Q6R2W3 1325 aa15.09■□□□□ 0.01
HPS4-212ENST00000481910 ZNF521Q96K83 1311 aa15.09■□□□□ 0.01
HPS4-212ENST00000481910 BCL9O00512 1426 aa15.09■□□□□ 0.01
HPS4-212ENST00000481910 TAF7Q15545 349 aaPredicted RBP15.09■□□□□ 0.01
HPS4-212ENST00000481910 TMOD3Q9NYL9 352 aa15.09■□□□□ 0.01
HPS4-212ENST00000481910 DOT1LQ8TEK3 1739 aa15.08■□□□□ 0.01
HPS4-212ENST00000481910 TOGARAM1Q9Y4F4 1720 aa15.08■□□□□ 0.01
HPS4-212ENST00000481910 KCNQ2O43526 872 aa15.08■□□□□ 0
HPS4-212ENST00000481910 GOLGA2Q08379 1002 aa15.08■□□□□ 0
HPS4-212ENST00000481910 ITGB4P16144 1822 aa15.08■□□□□ 0
HPS4-212ENST00000481910 BTBD11A6QL63 1104 aa15.07■□□□□ 0
HPS4-212ENST00000481910 PIGBQ92521 554 aa15.07■□□□□ 0
HPS4-212ENST00000481910 CFAP44Q96MT7 982 aa15.07■□□□□ 0
HPS4-212ENST00000481910 MIS18AQ9NYP9 233 aa15.07■□□□□ 0
HPS4-212ENST00000481910 SBF2Q86WG5 1849 aa15.06■□□□□ 0
HPS4-212ENST00000481910 GNAI1P63096 354 aa15.06■□□□□ 0
HPS4-212ENST00000481910 IL16Q14005 1332 aa15.06■□□□□ 0
HPS4-212ENST00000481910 PDE4CQ08493 712 aa15.05■□□□□ 0
HPS4-212ENST00000481910 IFT57Q9NWB7 429 aa15.05■□□□□ 0
HPS4-212ENST00000481910 MRC1P22897 1456 aa15.05■□□□□ 0
HPS4-212ENST00000481910 TRIM37O94972 964 aa15.05■□□□□ -0
HPS4-212ENST00000481910 PTF1AQ7RTS3 328 aa15.05■□□□□ -0
HPS4-212ENST00000481910 CDCA7LQ96GN5 454 aa15.05■□□□□ -0
HPS4-212ENST00000481910 SPINK5Q9NQ38 1064 aaPredicted RBP15.05■□□□□ -0
HPS4-212ENST00000481910 SIPA1L3O60292 1781 aaPredicted RBP15.04■□□□□ -0
HPS4-212ENST00000481910 CHL1O00533 1208 aa15.04■□□□□ -0
HPS4-212ENST00000481910 ZNF853P0CG23 659 aa15.04■□□□□ -0
HPS4-212ENST00000481910 BCL11BQ9C0K0 894 aaPredicted RBP15.04■□□□□ -0
HPS4-212ENST00000481910 TSPYL4Q9UJ04 414 aa15.04■□□□□ -0
HPS4-212ENST00000481910 SLC39A6Q13433 755 aa15.04■□□□□ -0
HPS4-212ENST00000481910 MBIPQ9NS73 344 aa15.04■□□□□ -0
HPS4-212ENST00000481910 BABAM1Q9NWV8 329 aa15.04■□□□□ -0
HPS4-212ENST00000481910 E9PSI1 815 aa15.03■□□□□ -0
HPS4-212ENST00000481910 SLFN5Q08AF3 891 aa15.03■□□□□ -0
HPS4-212ENST00000481910 MYH16Q9H6N6 1097 aa15.03■□□□□ -0
HPS4-212ENST00000481910 ASAP1Q9ULH1 1129 aa15.03■□□□□ -0
HPS4-212ENST00000481910 NHSQ6T4R5 1651 aa15.02■□□□□ -0
HPS4-212ENST00000481910 ZNF790Q6PG37 636 aa15.02■□□□□ -0
HPS4-212ENST00000481910 TTC5Q8N0Z6 440 aa15.02■□□□□ -0
HPS4-212ENST00000481910 TSR2Q969E8 191 aaKnown RBP15.02■□□□□ -0
HPS4-212ENST00000481910 KCNQ3O43525 872 aa15.02□□□□□ -0.01
HPS4-212ENST00000481910 ATG3Q9NT62 314 aa15.02□□□□□ -0.01
HPS4-212ENST00000481910 BTAF1O14981 1849 aa15□□□□□ -0.01
HPS4-212ENST00000481910 FANCIQ9NVI1 1328 aa15□□□□□ -0.01
HPS4-212ENST00000481910 PTCD1O75127 700 aaKnown RBP15□□□□□ -0.01
HPS4-212ENST00000481910 VSIG10Q8N0Z9 540 aa15□□□□□ -0.01
HPS4-212ENST00000481910 SMARCC1Q92922 1105 aaPredicted RBP15□□□□□ -0.01
HPS4-212ENST00000481910 KDM3BQ7LBC6 1761 aa14.99□□□□□ -0.01
HPS4-212ENST00000481910 EIF4A1P60842 406 aaKnown RBP14.98□□□□□ -0.01
HPS4-212ENST00000481910 TRMT2AQ8IZ69 625 aaKnown RBP14.98□□□□□ -0.01
HPS4-212ENST00000481910 ZNF496Q96IT1 587 aaPredicted RBP14.98□□□□□ -0.01
HPS4-212ENST00000481910 RBM42Q9BTD8 480 aaKnown RBP14.98□□□□□ -0.01
HPS4-212ENST00000481910 APBA3O96018 575 aa14.98□□□□□ -0.01
HPS4-212ENST00000481910 DUSP27Q5VZP5 1158 aa14.98□□□□□ -0.01
HPS4-212ENST00000481910 FMNL2Q96PY5 1086 aa14.98□□□□□ -0.01
HPS4-212ENST00000481910 PALLDQ8WX93 1383 aa14.97□□□□□ -0.01
HPS4-212ENST00000481910 ELL2O00472 640 aaPredicted RBP14.96□□□□□ -0.01
HPS4-212ENST00000481910 EXOSC9Q06265 439 aaKnown RBP14.96□□□□□ -0.01
HPS4-212ENST00000481910 SF3B2Q13435 895 aaKnown RBP14.96□□□□□ -0.01
HPS4-212ENST00000481910 KRT24Q2M2I5 525 aa14.96□□□□□ -0.01
HPS4-212ENST00000481910 ILDR2Q71H61 639 aa14.96□□□□□ -0.01
HPS4-212ENST00000481910 PAPPAQ13219 1627 aa14.96□□□□□ -0.01
HPS4-212ENST00000481910 EP400Q96L91 3159 aa14.96□□□□□ -0.02
HPS4-212ENST00000481910 C8orf58Q8NAV2 365 aa14.95□□□□□ -0.02
HPS4-212ENST00000481910 UBR2Q8IWV8 1755 aa14.94□□□□□ -0.02
HPS4-212ENST00000481910 LOC102724428A0A0B4J2F2 783 aa14.94□□□□□ -0.02
HPS4-212ENST00000481910 PLSCR1O15162 318 aa14.94□□□□□ -0.02
HPS4-212ENST00000481910 SIK1P57059 783 aa14.94□□□□□ -0.02
HPS4-212ENST00000481910 CCDC125Q86Z20 511 aa14.94□□□□□ -0.02
HPS4-212ENST00000481910 KCPQ6ZWJ8 1503 aa14.94□□□□□ -0.02
HPS4-212ENST00000481910 HEG1Q9ULI3 1381 aa14.94□□□□□ -0.02
HPS4-212ENST00000481910 GIGYF1O75420 1035 aaPredicted RBP14.94□□□□□ -0.02
HPS4-212ENST00000481910 SNRPA1P09661 255 aaKnown RBP14.94□□□□□ -0.02
HPS4-212ENST00000481910 ATP6V1AP38606 617 aa14.94□□□□□ -0.02
HPS4-212ENST00000481910 TSPYL6Q8N831 410 aa14.94□□□□□ -0.02
HPS4-212ENST00000481910 TWISTNBQ3B726 338 aaPredicted RBP14.93□□□□□ -0.02
Retrieved 100 of 20,778 RNA–protein pairs in 38.4 ms