RNA–Protein interactions for RNA: ENST00000479965.5

CCDC88B-207, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 2

Gene CCDC88B, Length 3,102 nt, Biotype processed transcript, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-207ENST00000479965 CDK19Q9BWU1 502 aa22.57■■□□□ 1.2
CCDC88B-207ENST00000479965 GLI2P10070 1586 aa22.57■■□□□ 1.2
CCDC88B-207ENST00000479965 SLC4A2P04920 1241 aa22.56■■□□□ 1.2
CCDC88B-207ENST00000479965 UBE2HP62256 183 aa22.56■■□□□ 1.2
CCDC88B-207ENST00000479965 C16orf45Q96MC5 204 aaPredicted RBP22.56■■□□□ 1.2
CCDC88B-207ENST00000479965 FANCAO15360 1455 aa22.56■■□□□ 1.2
CCDC88B-207ENST00000479965 CHMLP26374 656 aa22.55■■□□□ 1.2
CCDC88B-207ENST00000479965 DRC7Q8IY82 874 aa22.55■■□□□ 1.2
CCDC88B-207ENST00000479965 NPATQ14207 1427 aa22.55■■□□□ 1.2
CCDC88B-207ENST00000479965 GOLGA6L6A8MZA4 724 aa22.55■■□□□ 1.2
CCDC88B-207ENST00000479965 PTGS1P23219 599 aa22.55■■□□□ 1.2
CCDC88B-207ENST00000479965 RRS1Q15050 365 aaKnown RBP22.55■■□□□ 1.2
CCDC88B-207ENST00000479965 MAP4K4O95819 1239 aaPredicted RBP22.54■■□□□ 1.2
CCDC88B-207ENST00000479965 ZSCAN22P10073 491 aaPredicted RBP22.54■■□□□ 1.2
CCDC88B-207ENST00000479965 ZRANB1Q9UGI0 708 aa22.54■■□□□ 1.2
CCDC88B-207ENST00000479965 MCM10Q7L590 875 aa22.53■■□□□ 1.2
CCDC88B-207ENST00000479965 NAA30Q147X3 362 aaPredicted RBP22.53■■□□□ 1.2
CCDC88B-207ENST00000479965 UNC5CLQ8IV45 518 aa22.53■■□□□ 1.2
CCDC88B-207ENST00000479965 ANKRD7Q92527 254 aa22.53■■□□□ 1.2
CCDC88B-207ENST00000479965 KIF24Q5T7B8 1368 aa22.53■■□□□ 1.2
CCDC88B-207ENST00000479965 RIMS2Q9UQ26 1411 aa22.53■■□□□ 1.2
CCDC88B-207ENST00000479965 IL13P35225 146 aa22.53■■□□□ 1.2
CCDC88B-207ENST00000479965 ANAPC15P60006 121 aa22.53■■□□□ 1.2
CCDC88B-207ENST00000479965 MIS18AQ9NYP9 233 aa22.53■■□□□ 1.2
CCDC88B-207ENST00000479965 MROH1Q8NDA8 1641 aa22.52■■□□□ 1.2
CCDC88B-207ENST00000479965 STX6O43752 255 aa22.52■■□□□ 1.2
CCDC88B-207ENST00000479965 SYT1P21579 422 aa22.52■■□□□ 1.2
CCDC88B-207ENST00000479965 LRRCC1Q9C099 1032 aa22.52■■□□□ 1.2
CCDC88B-207ENST00000479965 OSBPL3Q9H4L5 887 aa22.52■■□□□ 1.2
CCDC88B-207ENST00000479965 SMC3Q9UQE7 1217 aa22.51■■□□□ 1.19
CCDC88B-207ENST00000479965 ARHGEF40Q8TER5 1519 aa22.51■■□□□ 1.19
CCDC88B-207ENST00000479965 DNM1Q05193 864 aaKnown RBP22.51■■□□□ 1.19
CCDC88B-207ENST00000479965 IL25Q9H293 177 aa22.51■■□□□ 1.19
CCDC88B-207ENST00000479965 RGS12O14924 1447 aa22.51■■□□□ 1.19
CCDC88B-207ENST00000479965 CAMK4Q16566 473 aa22.51■■□□□ 1.19
CCDC88B-207ENST00000479965 ZNF592Q92610 1267 aa22.51■■□□□ 1.19
CCDC88B-207ENST00000479965 NCBP1Q09161 790 aaKnown RBP22.5■■□□□ 1.19
CCDC88B-207ENST00000479965 LRMPQ12912 555 aa22.5■■□□□ 1.19
CCDC88B-207ENST00000479965 ZFYVE9O95405 1425 aa22.5■■□□□ 1.19
CCDC88B-207ENST00000479965 ZBTB22O15209 634 aa22.5■■□□□ 1.19
CCDC88B-207ENST00000479965 RPAP1Q9BWH6 1393 aaPredicted RBP22.5■■□□□ 1.19
CCDC88B-207ENST00000479965 TCHHQ07283 1943 aa22.49■■□□□ 1.19
CCDC88B-207ENST00000479965 NME9Q86XW9 330 aa22.49■■□□□ 1.19
CCDC88B-207ENST00000479965 IL1RAPL2Q9NP60 686 aa22.49■■□□□ 1.19
CCDC88B-207ENST00000479965 VPS37CA5D8V6 355 aaPredicted RBP22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 CPA1P15085 419 aa22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 CCDC186Q7Z3E2 898 aa22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 OGFRQ9NZT2 677 aa22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 ZCCHC11Q5TAX3 1644 aaKnown RBP22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 F13A1P00488 732 aa22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 G2E3Q7L622 706 aa22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 TMEM87AQ8NBN3 555 aa22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 TPM3P06753 285 aa22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 CCDC192P0DO97 292 aa22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 FEZ1Q99689 392 aa22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 CD163L1Q9NR16 1453 aa22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 CAMSAP1Q5T5Y3 1602 aa22.48■■□□□ 1.19
CCDC88B-207ENST00000479965 CTIFO43310 598 aaKnown RBP22.47■■□□□ 1.19
CCDC88B-207ENST00000479965 LUZP1Q86V48 1076 aa22.47■■□□□ 1.19
CCDC88B-207ENST00000479965 HAP1P54257 671 aaPredicted RBP22.47■■□□□ 1.19
CCDC88B-207ENST00000479965 AEBP1Q8IUX7 1158 aa22.47■■□□□ 1.19
CCDC88B-207ENST00000479965 AK2P54819 239 aa22.46■■□□□ 1.19
CCDC88B-207ENST00000479965 ATP6V1DQ9Y5K8 247 aa22.46■■□□□ 1.19
CCDC88B-207ENST00000479965 GNAI2P04899 355 aa22.46■■□□□ 1.19
CCDC88B-207ENST00000479965 TNNT1P13805 278 aa22.46■■□□□ 1.19
CCDC88B-207ENST00000479965 PPLO60437 1756 aa22.46■■□□□ 1.19
CCDC88B-207ENST00000479965 GTF2E1P29083 439 aaPredicted RBP22.46■■□□□ 1.19
CCDC88B-207ENST00000479965 FUCA2Q9BTY2 467 aa22.46■■□□□ 1.19
CCDC88B-207ENST00000479965 IDI1Q13907 227 aa22.45■■□□□ 1.18
CCDC88B-207ENST00000479965 CCDC83Q8IWF9 413 aa22.45■■□□□ 1.18
CCDC88B-207ENST00000479965 NRBP1Q9UHY1 535 aa22.45■■□□□ 1.18
CCDC88B-207ENST00000479965 ARHGEF28Q8N1W1 1705 aaKnown RBP22.45■■□□□ 1.18
CCDC88B-207ENST00000479965 YTHDC2Q9H6S0 1430 aaKnown RBP22.45■■□□□ 1.18
CCDC88B-207ENST00000479965 PTPRCP08575 1304 aa22.45■■□□□ 1.18
CCDC88B-207ENST00000479965 PNMA6EA0A0J9YXQ4 647 aa22.45■■□□□ 1.18
CCDC88B-207ENST00000479965 NUTM1Q86Y26 1132 aa22.45■■□□□ 1.18
CCDC88B-207ENST00000479965 CKAP2LQ8IYA6 745 aa22.45■■□□□ 1.18
CCDC88B-207ENST00000479965 ZSCAN21Q9Y5A6 473 aaPredicted RBP22.45■■□□□ 1.18
CCDC88B-207ENST00000479965 SULT6B1Q6IMI4 303 aa22.44■■□□□ 1.18
CCDC88B-207ENST00000479965 NECTIN2Q92692 538 aa22.44■■□□□ 1.18
CCDC88B-207ENST00000479965 YEATS2Q9ULM3 1422 aa22.44■■□□□ 1.18
CCDC88B-207ENST00000479965 TRIM5Q9C035 493 aa22.44■■□□□ 1.18
CCDC88B-207ENST00000479965 CCDC112Q8NEF3 446 aa22.43■■□□□ 1.18
CCDC88B-207ENST00000479965 DDX54Q8TDD1 881 aaKnown RBP22.43■■□□□ 1.18
CCDC88B-207ENST00000479965 VGLL3A8MV65 326 aa22.43■■□□□ 1.18
CCDC88B-207ENST00000479965 CTNNA3Q9UI47 895 aa22.43■■□□□ 1.18
CCDC88B-207ENST00000479965 HSPA4P34932 840 aa22.42■■□□□ 1.18
CCDC88B-207ENST00000479965 TPD52L1Q16890 204 aaPredicted RBP22.42■■□□□ 1.18
CCDC88B-207ENST00000479965 NOL12Q9UGY1 213 aaKnown RBP eCLIP22.42■■□□□ 1.18
CCDC88B-207ENST00000479965 V9GYY5 206 aaPredicted RBP22.42■■□□□ 1.18
CCDC88B-207ENST00000479965 ABCC3O15438 1527 aa22.42■■□□□ 1.18
CCDC88B-207ENST00000479965 GJB2P29033 226 aa22.42■■□□□ 1.18
CCDC88B-207ENST00000479965 WAPLQ7Z5K2 1190 aa22.42■■□□□ 1.18
CCDC88B-207ENST00000479965 FERMT3Q86UX7 667 aa22.42■■□□□ 1.18
CCDC88B-207ENST00000479965 LIMCH1Q9UPQ0 1083 aa22.42■■□□□ 1.18
CCDC88B-207ENST00000479965 MAPK8IP2Q13387 824 aaPredicted RBP22.42■■□□□ 1.18
CCDC88B-207ENST00000479965 RUFY3Q7L099 469 aa22.41■■□□□ 1.18
CCDC88B-207ENST00000479965 LARGE1O95461 756 aa22.41■■□□□ 1.18
CCDC88B-207ENST00000479965 CDK11BP21127 795 aaKnown RBP22.41■■□□□ 1.18
CCDC88B-207ENST00000479965 RASEFQ8IZ41 740 aa22.41■■□□□ 1.18
Retrieved 100 of 20,778 RNA–protein pairs in 12.9 ms