RNA–Protein interactions for RNA: ENST00000478916.5

SYNE1-224, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 7,780 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-224ENST00000478916 PPM1EQ8WY54 764 aa10.32□□□□□ -0.76
SYNE1-224ENST00000478916 ZNF428Q96B54 188 aa10.32□□□□□ -0.76
SYNE1-224ENST00000478916 TANGO6Q9C0B7 1094 aa10.32□□□□□ -0.76
SYNE1-224ENST00000478916 C1orf115Q9H7X2 142 aa10.32□□□□□ -0.76
SYNE1-224ENST00000478916 K7ELQ4 463 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-224ENST00000478916 ZSCAN29Q8IWY8 852 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-224ENST00000478916 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP10.32□□□□□ -0.76
SYNE1-224ENST00000478916 ATP2B1P20020 1258 aa10.32□□□□□ -0.76
SYNE1-224ENST00000478916 ME1P48163 572 aa10.32□□□□□ -0.76
SYNE1-224ENST00000478916 MPNDQ8N594 471 aa10.32□□□□□ -0.76
SYNE1-224ENST00000478916 DENND4BO75064 1496 aaPredicted RBP10.32□□□□□ -0.76
SYNE1-224ENST00000478916 KDM4AO75164 1064 aa10.32□□□□□ -0.76
SYNE1-224ENST00000478916 PTPN14Q15678 1187 aa10.32□□□□□ -0.76
SYNE1-224ENST00000478916 FILIP1Q7Z7B0 1213 aa10.31□□□□□ -0.76
SYNE1-224ENST00000478916 IBSPP21815 317 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-224ENST00000478916 RNF187Q5TA31 235 aaPredicted RBP10.31□□□□□ -0.76
SYNE1-224ENST00000478916 RAI14Q9P0K7 980 aa10.31□□□□□ -0.76
SYNE1-224ENST00000478916 CASQ1P31415 396 aa10.31□□□□□ -0.76
SYNE1-224ENST00000478916 NFE2L2Q16236 605 aa10.31□□□□□ -0.76
SYNE1-224ENST00000478916 AACSQ86V21 672 aa10.31□□□□□ -0.76
SYNE1-224ENST00000478916 CTNNA3Q9UI47 895 aa10.31□□□□□ -0.76
SYNE1-224ENST00000478916 CYP46A1Q9Y6A2 500 aa10.31□□□□□ -0.76
SYNE1-224ENST00000478916 ARHGAP29Q52LW3 1261 aa10.31□□□□□ -0.76
SYNE1-224ENST00000478916 CEP57L1Q8IYX8 460 aa10.31□□□□□ -0.76
SYNE1-224ENST00000478916 FKBP4Q02790 459 aaKnown RBP eCLIP10.31□□□□□ -0.76
SYNE1-224ENST00000478916 KIF18AQ8NI77 898 aa10.31□□□□□ -0.76
SYNE1-224ENST00000478916 CDKL5O76039 1030 aa10.3□□□□□ -0.76
SYNE1-224ENST00000478916 NUP62CLQ9H1M0 184 aa10.3□□□□□ -0.76
SYNE1-224ENST00000478916 TDO2P48775 406 aa10.3□□□□□ -0.76
SYNE1-224ENST00000478916 CIZ1Q9ULV3 898 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-224ENST00000478916 PHF8Q9UPP1 1060 aa10.3□□□□□ -0.76
SYNE1-224ENST00000478916 SRGAP3O43295 1099 aa10.3□□□□□ -0.76
SYNE1-224ENST00000478916 ATF7IPQ6VMQ6 1270 aa10.3□□□□□ -0.76
SYNE1-224ENST00000478916 UPF3BQ9BZI7 483 aaKnown RBP10.3□□□□□ -0.76
SYNE1-224ENST00000478916 ZNF287Q9HBT7 754 aa10.3□□□□□ -0.76
SYNE1-224ENST00000478916 ZSCAN12O43309 604 aa10.3□□□□□ -0.76
SYNE1-224ENST00000478916 WDHD1O75717 1129 aaPredicted RBP10.3□□□□□ -0.76
SYNE1-224ENST00000478916 LRP2BPQ9P2M1 347 aa10.3□□□□□ -0.76
SYNE1-224ENST00000478916 IMMTQ16891 758 aaKnown RBP10.29□□□□□ -0.76
SYNE1-224ENST00000478916 ZNF397Q8NF99 534 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-224ENST00000478916 MCM4P33991 863 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 UBAC1Q9BSL1 405 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 GTF2A1P52655 376 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-224ENST00000478916 NGLY1Q96IV0 654 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 AKAP2Q9Y2D5 859 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 GCOM1H8Y6P7 765 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-224ENST00000478916 ADAMTS2O95450 1211 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 MYZAPP0CAP1 466 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 DESP17661 470 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 SMC1AQ14683 1233 aaKnown RBP10.29□□□□□ -0.76
SYNE1-224ENST00000478916 NOL7Q9UMY1 257 aaKnown RBP10.29□□□□□ -0.76
SYNE1-224ENST00000478916 AMOTL2Q9Y2J4 779 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 PCF11O94913 1555 aaKnown RBP10.29□□□□□ -0.76
SYNE1-224ENST00000478916 RBM25P49756 843 aaKnown RBP10.29□□□□□ -0.76
SYNE1-224ENST00000478916 CCDC113Q9H0I3 377 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 PDZRN3Q9UPQ7 1066 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 PLB1Q6P1J6 1458 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 MPHOSPH10O00566 681 aaKnown RBP10.29□□□□□ -0.76
SYNE1-224ENST00000478916 POLR3GO15318 223 aaPredicted RBP10.29□□□□□ -0.76
SYNE1-224ENST00000478916 CDCA7LQ96GN5 454 aa10.29□□□□□ -0.76
SYNE1-224ENST00000478916 UBE2Q2Q8WVN8 375 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 CAVIN4Q5BKX8 364 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 TIGD1Q96MW7 591 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 WAPLQ7Z5K2 1190 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 LUZP1Q86V48 1076 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 NUP133Q8WUM0 1156 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 SPATA32Q96LK8 384 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 NBPF8Q3BBV2 869 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 SEPT11Q9NVA2 429 aaKnown RBP10.28□□□□□ -0.76
SYNE1-224ENST00000478916 PTPN23Q9H3S7 1636 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 KIF5CO60282 957 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 CCDC175P0C221 793 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 PDIA4P13667 645 aaKnown RBP10.28□□□□□ -0.76
SYNE1-224ENST00000478916 GIGYF2Q6Y7W6 1299 aaKnown RBP10.28□□□□□ -0.76
SYNE1-224ENST00000478916 FANCAO15360 1455 aa10.28□□□□□ -0.76
SYNE1-224ENST00000478916 MVPQ14764 893 aaKnown RBP10.28□□□□□ -0.76
SYNE1-224ENST00000478916 LARP1Q6PKG0 1096 aaKnown RBP10.27□□□□□ -0.76
SYNE1-224ENST00000478916 TRERF1Q96PN7 1200 aa10.27□□□□□ -0.76
SYNE1-224ENST00000478916 IFFO1Q0D2I5 559 aa10.27□□□□□ -0.77
SYNE1-224ENST00000478916 LARP1BQ659C4 914 aaKnown RBP10.27□□□□□ -0.77
SYNE1-224ENST00000478916 GTF2F1P35269 517 aaKnown RBP eCLIP10.27□□□□□ -0.77
SYNE1-224ENST00000478916 METTL24Q5JXM2 366 aa10.27□□□□□ -0.77
SYNE1-224ENST00000478916 AIDAQ96BJ3 306 aa10.27□□□□□ -0.77
SYNE1-224ENST00000478916 POTEB2H3BUK9 544 aa10.27□□□□□ -0.77
SYNE1-224ENST00000478916 TEX14Q8IWB6 1497 aa10.27□□□□□ -0.77
SYNE1-224ENST00000478916 KRT32Q14532 448 aa10.27□□□□□ -0.77
SYNE1-224ENST00000478916 MAP3K11Q16584 847 aa10.27□□□□□ -0.77
SYNE1-224ENST00000478916 CFAP57Q96MR6 1250 aa10.27□□□□□ -0.77
SYNE1-224ENST00000478916 EIF5P55010 431 aaKnown RBP10.27□□□□□ -0.77
SYNE1-224ENST00000478916 DNAAF4Q8WXU2 420 aa10.27□□□□□ -0.77
SYNE1-224ENST00000478916 CETN2P41208 172 aa10.26□□□□□ -0.77
SYNE1-224ENST00000478916 WASF1Q92558 559 aa10.26□□□□□ -0.77
SYNE1-224ENST00000478916 BACH2Q9BYV9 841 aa10.26□□□□□ -0.77
SYNE1-224ENST00000478916 ZHX1Q9UKY1 873 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-224ENST00000478916 IFIT1P09914 478 aaKnown RBP10.26□□□□□ -0.77
SYNE1-224ENST00000478916 MNAT1P51948 309 aa10.26□□□□□ -0.77
SYNE1-224ENST00000478916 WASLO00401 505 aaPredicted RBP10.26□□□□□ -0.77
SYNE1-224ENST00000478916 EXOC5O00471 708 aa10.26□□□□□ -0.77
SYNE1-224ENST00000478916 PTCD1O75127 700 aaKnown RBP10.26□□□□□ -0.77
SYNE1-224ENST00000478916 SFPQP23246 707 aaKnown RBP eCLIP10.26□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms