RNA–Protein interactions for RNA: ENST00000478423.6

NPHP4-208, Transcript of nephrocystin 4, humanhuman

TSL 2

Gene NPHP4, Length 4,467 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NPHP4-208ENST00000478423 PIK3C2GO75747 1445 aa16.9■□□□□ 0.3
NPHP4-208ENST00000478423 NPATQ14207 1427 aa16.9■□□□□ 0.3
NPHP4-208ENST00000478423 KRT32Q14532 448 aa16.9■□□□□ 0.3
NPHP4-208ENST00000478423 CTNNA3Q9UI47 895 aa16.9■□□□□ 0.3
NPHP4-208ENST00000478423 CEP170Q5SW79 1584 aa16.9■□□□□ 0.3
NPHP4-208ENST00000478423 YTHDC2Q9H6S0 1430 aaKnown RBP16.9■□□□□ 0.3
NPHP4-208ENST00000478423 CASTP20810 708 aaKnown RBP16.9■□□□□ 0.3
NPHP4-208ENST00000478423 BMP2KLQ5H9B9 411 aa16.9■□□□□ 0.3
NPHP4-208ENST00000478423 PPP1R42Q7Z4L9 355 aa16.9■□□□□ 0.3
NPHP4-208ENST00000478423 PCMTD1Q96MG8 357 aaPredicted RBP16.9■□□□□ 0.3
NPHP4-208ENST00000478423 ATP5J2-PTCD1G3V325 749 aa16.89■□□□□ 0.29
NPHP4-208ENST00000478423 IGHMBP2P38935 993 aaKnown RBP16.89■□□□□ 0.29
NPHP4-208ENST00000478423 CCAR2Q8N163 923 aaKnown RBP16.89■□□□□ 0.29
NPHP4-208ENST00000478423 ABCF2Q9UG63 623 aa16.89■□□□□ 0.29
NPHP4-208ENST00000478423 TCEAL9Q9UHQ7 104 aa16.89■□□□□ 0.29
NPHP4-208ENST00000478423 EXOC5O00471 708 aa16.89■□□□□ 0.29
NPHP4-208ENST00000478423 KRT85P78386 507 aa16.89■□□□□ 0.29
NPHP4-208ENST00000478423 LRP2BPQ9P2M1 347 aa16.89■□□□□ 0.29
NPHP4-208ENST00000478423 TNNQ9UQP3 1299 aa16.89■□□□□ 0.29
NPHP4-208ENST00000478423 COL17A1Q9UMD9 1497 aaPredicted RBP16.89■□□□□ 0.29
NPHP4-208ENST00000478423 PIK3R4Q99570 1358 aa16.88■□□□□ 0.29
NPHP4-208ENST00000478423 PRPF40BQ6NWY9 871 aaKnown RBP16.88■□□□□ 0.29
NPHP4-208ENST00000478423 UBE3BQ7Z3V4 1068 aa16.88■□□□□ 0.29
NPHP4-208ENST00000478423 NOC3LQ8WTT2 800 aaKnown RBP16.88■□□□□ 0.29
NPHP4-208ENST00000478423 IPO7O95373 1038 aaKnown RBP16.88■□□□□ 0.29
NPHP4-208ENST00000478423 NCBP3Q53F19 620 aaKnown RBP16.88■□□□□ 0.29
NPHP4-208ENST00000478423 ZSCAN31Q96LW9 406 aaPredicted RBP16.88■□□□□ 0.29
NPHP4-208ENST00000478423 MTHFSDQ2M296 383 aaKnown RBP16.88■□□□□ 0.29
NPHP4-208ENST00000478423 TSPYL6Q8N831 410 aa16.88■□□□□ 0.29
NPHP4-208ENST00000478423 TBX22Q9Y458 520 aa16.88■□□□□ 0.29
NPHP4-208ENST00000478423 IFIT5Q13325 482 aaKnown RBP16.88■□□□□ 0.29
NPHP4-208ENST00000478423 ZNF396Q96N95 335 aaPredicted RBP16.88■□□□□ 0.29
NPHP4-208ENST00000478423 TDO2P48775 406 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 IKQ13123 557 aaPredicted RBP16.87■□□□□ 0.29
NPHP4-208ENST00000478423 HDAC1Q13547 482 aaPredicted RBP16.87■□□□□ 0.29
NPHP4-208ENST00000478423 RAI14Q9P0K7 980 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 NPHP3Q7Z494 1330 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 ATP7AQ04656 1500 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 IFIT1P09914 478 aaKnown RBP16.87■□□□□ 0.29
NPHP4-208ENST00000478423 RLBP1P12271 317 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 GPTP24298 496 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 TSHZ3Q63HK5 1081 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 TBC1D9Q6ZT07 1266 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 TRIM22Q8IYM9 498 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 FAM43AQ8N2R8 423 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 NAT10Q9H0A0 1025 aaKnown RBP16.87■□□□□ 0.29
NPHP4-208ENST00000478423 TRMT112Q9UI30 125 aaKnown RBP16.87■□□□□ 0.29
NPHP4-208ENST00000478423 AKAP2Q9Y2D5 859 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 KRT24Q2M2I5 525 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 TBC1D2Q9BYX2 928 aa16.87■□□□□ 0.29
NPHP4-208ENST00000478423 HOMER1Q86YM7 354 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 LRRC59Q96AG4 307 aaKnown RBP16.86■□□□□ 0.29
NPHP4-208ENST00000478423 FLT4P35916 1363 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 SNRPA1P09661 255 aaKnown RBP16.86■□□□□ 0.29
NPHP4-208ENST00000478423 ECHDC1Q9NTX5 307 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 CHPF2Q9P2E5 772 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 VAMP4O75379 141 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 EYA1Q99502 592 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 TRIM5Q9C035 493 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 ME1P48163 572 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 PDE4CQ08493 712 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 SLC39A6Q13433 755 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 MAP3K19Q56UN5 1328 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 NUP133Q8WUM0 1156 aa16.86■□□□□ 0.29
NPHP4-208ENST00000478423 LETM1O95202 739 aaPredicted RBP16.85■□□□□ 0.29
NPHP4-208ENST00000478423 TARBP1Q13395 1621 aaKnown RBP16.85■□□□□ 0.29
NPHP4-208ENST00000478423 MRPL50Q8N5N7 158 aaKnown RBP16.85■□□□□ 0.29
NPHP4-208ENST00000478423 NGLY1Q96IV0 654 aa16.85■□□□□ 0.29
NPHP4-208ENST00000478423 TSPY26PQ9H489 355 aa16.85■□□□□ 0.29
NPHP4-208ENST00000478423 ZNF652Q9Y2D9 606 aa16.85■□□□□ 0.29
NPHP4-208ENST00000478423 ANKRD13DQ6ZTN6 518 aa16.85■□□□□ 0.29
NPHP4-208ENST00000478423 CABLES1Q8TDN4 633 aa16.85■□□□□ 0.29
NPHP4-208ENST00000478423 AIDAQ96BJ3 306 aa16.85■□□□□ 0.29
NPHP4-208ENST00000478423 CEP89Q96ST8 783 aa16.85■□□□□ 0.29
NPHP4-208ENST00000478423 OLFM4Q6UX06 510 aa16.84■□□□□ 0.29
NPHP4-208ENST00000478423 FERMT3Q86UX7 667 aa16.84■□□□□ 0.29
NPHP4-208ENST00000478423 JARID2Q92833 1246 aaPredicted RBP16.84■□□□□ 0.29
NPHP4-208ENST00000478423 BRPF3Q9ULD4 1205 aa16.84■□□□□ 0.29
NPHP4-208ENST00000478423 MSH6P52701 1360 aa16.84■□□□□ 0.29
NPHP4-208ENST00000478423 DDX11Q96FC9 970 aa16.84■□□□□ 0.29
NPHP4-208ENST00000478423 PHF23Q9BUL5 403 aaPredicted RBP16.84■□□□□ 0.29
NPHP4-208ENST00000478423 C19orf44Q9H6X5 657 aa16.84■□□□□ 0.29
NPHP4-208ENST00000478423 ABCC1P33527 1531 aa16.84■□□□□ 0.29
NPHP4-208ENST00000478423 JMYQ8N9B5 988 aa16.84■□□□□ 0.29
NPHP4-208ENST00000478423 CCDC69A6NI79 296 aa16.84■□□□□ 0.29
NPHP4-208ENST00000478423 GCP02774 474 aa16.84■□□□□ 0.29
NPHP4-208ENST00000478423 HSP90AB3PQ58FF7 597 aa16.83■□□□□ 0.29
NPHP4-208ENST00000478423 RSPH6AQ9H0K4 717 aa16.83■□□□□ 0.29
NPHP4-208ENST00000478423 U3KPZ7 1027 aaPredicted RBP16.83■□□□□ 0.29
NPHP4-208ENST00000478423 IMMTQ16891 758 aaKnown RBP16.83■□□□□ 0.28
NPHP4-208ENST00000478423 CCDC83Q8IWF9 413 aa16.83■□□□□ 0.28
NPHP4-208ENST00000478423 CFAP65Q6ZU64 1925 aaKnown RBP16.83■□□□□ 0.28
NPHP4-208ENST00000478423 UBAC1Q9BSL1 405 aa16.83■□□□□ 0.28
NPHP4-208ENST00000478423 ATP2B2Q01814 1243 aa16.82■□□□□ 0.28
NPHP4-208ENST00000478423 NUCB1Q02818 461 aa16.82■□□□□ 0.28
NPHP4-208ENST00000478423 ANKRD44Q8N8A2 993 aa16.82■□□□□ 0.28
NPHP4-208ENST00000478423 NPC1L1Q9UHC9 1359 aa16.82■□□□□ 0.28
NPHP4-208ENST00000478423 HSPA2P54652 639 aa16.82■□□□□ 0.28
NPHP4-208ENST00000478423 AKAP4Q5JQC9 854 aa16.82■□□□□ 0.28
NPHP4-208ENST00000478423 COPS6Q7L5N1 327 aa16.82■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms