RNA–Protein interactions for RNA: ENST00000477573.1

RTFDC1-207, Transcript of Protein RTF2 homolog, humanhuman

TSL 1 (best)

Gene RTFDC1, Length 2,193 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RTFDC1-207ENST00000477573 ACEP12821 1306 aa15.41■□□□□ 0.06
RTFDC1-207ENST00000477573 MAP2P11137 1827 aaKnown RBP15.41■□□□□ 0.06
RTFDC1-207ENST00000477573 NEUROD2Q15784 382 aa15.41■□□□□ 0.06
RTFDC1-207ENST00000477573 SMC4Q9NTJ3 1288 aa15.41■□□□□ 0.06
RTFDC1-207ENST00000477573 PLIN1O60240 522 aa15.4■□□□□ 0.06
RTFDC1-207ENST00000477573 SEC24BO95487 1268 aa15.4■□□□□ 0.06
RTFDC1-207ENST00000477573 KLHL40Q2TBA0 621 aa15.4■□□□□ 0.06
RTFDC1-207ENST00000477573 PHF23Q9BUL5 403 aaPredicted RBP15.4■□□□□ 0.06
RTFDC1-207ENST00000477573 TTC21BQ7Z4L5 1316 aa15.39■□□□□ 0.05
RTFDC1-207ENST00000477573 KCNA6P17658 529 aa15.39■□□□□ 0.05
RTFDC1-207ENST00000477573 U2AF2P26368 475 aaKnown RBP eCLIP15.39■□□□□ 0.05
RTFDC1-207ENST00000477573 SATB1Q01826 763 aa15.39■□□□□ 0.05
RTFDC1-207ENST00000477573 USP6P35125 1406 aa15.38■□□□□ 0.05
RTFDC1-207ENST00000477573 ANKARQ7Z5J8 1434 aa15.38■□□□□ 0.05
RTFDC1-207ENST00000477573 RAD50Q92878 1312 aa15.38■□□□□ 0.05
RTFDC1-207ENST00000477573 NUTM2FA1L443 756 aa15.38■□□□□ 0.05
RTFDC1-207ENST00000477573 GTF2A1P52655 376 aaPredicted RBP15.38■□□□□ 0.05
RTFDC1-207ENST00000477573 RRP7AQ9Y3A4 280 aaKnown RBP15.38■□□□□ 0.05
RTFDC1-207ENST00000477573 CDK12Q9NYV4 1490 aaPredicted RBP15.38■□□□□ 0.05
RTFDC1-207ENST00000477573 FCHSD2O94868 740 aa15.38■□□□□ 0.05
RTFDC1-207ENST00000477573 NOP2P46087 812 aaKnown RBP15.38■□□□□ 0.05
RTFDC1-207ENST00000477573 NRKQ7Z2Y5 1582 aa15.37■□□□□ 0.05
RTFDC1-207ENST00000477573 GOLGA6L22H0YM25 854 aa15.37■□□□□ 0.05
RTFDC1-207ENST00000477573 CCDC172P0C7W6 258 aa15.37■□□□□ 0.05
RTFDC1-207ENST00000477573 SYCP1Q15431 976 aa15.37■□□□□ 0.05
RTFDC1-207ENST00000477573 C20orf194Q5TEA3 1177 aa15.37■□□□□ 0.05
RTFDC1-207ENST00000477573 PLEKHF1Q96S99 279 aa15.37■□□□□ 0.05
RTFDC1-207ENST00000477573 SPINK5Q9NQ38 1064 aaPredicted RBP15.37■□□□□ 0.05
RTFDC1-207ENST00000477573 CHD2O14647 1828 aaKnown RBP15.37■□□□□ 0.05
RTFDC1-207ENST00000477573 TTC21AQ8NDW8 1320 aa15.37■□□□□ 0.05
RTFDC1-207ENST00000477573 PRR29P0C7W0 189 aa15.36■□□□□ 0.05
RTFDC1-207ENST00000477573 TNPO1Q92973 898 aaKnown RBP15.36■□□□□ 0.05
RTFDC1-207ENST00000477573 NGDNQ8NEJ9 315 aaKnown RBP15.36■□□□□ 0.05
RTFDC1-207ENST00000477573 RAB3GAP1Q15042 981 aa15.35■□□□□ 0.05
RTFDC1-207ENST00000477573 CLEC17AQ6ZS10 378 aa15.35■□□□□ 0.05
RTFDC1-207ENST00000477573 FAM43BQ6ZT52 329 aaPredicted RBP15.35■□□□□ 0.05
RTFDC1-207ENST00000477573 DIAPH3Q9NSV4 1193 aa15.35■□□□□ 0.05
RTFDC1-207ENST00000477573 ZRANB1Q9UGI0 708 aa15.35■□□□□ 0.05
RTFDC1-207ENST00000477573 EMILIN1Q9Y6C2 1016 aa15.35■□□□□ 0.05
RTFDC1-207ENST00000477573 MORC2Q9Y6X9 1032 aaPredicted RBP15.35■□□□□ 0.05
RTFDC1-207ENST00000477573 TMPOP42166 694 aaKnown RBP15.34■□□□□ 0.05
RTFDC1-207ENST00000477573 ICE2Q659A1 982 aa15.34■□□□□ 0.05
RTFDC1-207ENST00000477573 PIBF1Q8WXW3 757 aa15.34■□□□□ 0.05
RTFDC1-207ENST00000477573 ZBTB9Q96C00 473 aa15.34■□□□□ 0.05
RTFDC1-207ENST00000477573 DDX41Q9UJV9 622 aaKnown RBP15.34■□□□□ 0.05
RTFDC1-207ENST00000477573 NPHP4O75161 1426 aaPredicted RBP15.34■□□□□ 0.05
RTFDC1-207ENST00000477573 CTIFO43310 598 aaKnown RBP15.34■□□□□ 0.05
RTFDC1-207ENST00000477573 DMRT2Q9Y5R5 561 aa15.34■□□□□ 0.05
RTFDC1-207ENST00000477573 CT47A1Q5JQC4 288 aaPredicted RBP15.33■□□□□ 0.04
RTFDC1-207ENST00000477573 HSCBQ8IWL3 235 aa15.33■□□□□ 0.04
RTFDC1-207ENST00000477573 OVOS2A0A0J9YW53 1432 aa15.33■□□□□ 0.04
RTFDC1-207ENST00000477573 OVOS2Q6IE36 1432 aa15.33■□□□□ 0.04
RTFDC1-207ENST00000477573 SSH2Q76I76 1423 aa15.33■□□□□ 0.04
RTFDC1-207ENST00000477573 FMN2Q9NZ56 1722 aa15.33■□□□□ 0.04
RTFDC1-207ENST00000477573 FBLN1P23142 703 aa15.32■□□□□ 0.04
RTFDC1-207ENST00000477573 SMC5Q8IY18 1101 aa15.32■□□□□ 0.04
RTFDC1-207ENST00000477573 PMFBP1Q8TBY8 1022 aa15.32■□□□□ 0.04
RTFDC1-207ENST00000477573 TSC1Q92574 1164 aa15.32■□□□□ 0.04
RTFDC1-207ENST00000477573 RAI14Q9P0K7 980 aa15.32■□□□□ 0.04
RTFDC1-207ENST00000477573 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP15.32■□□□□ 0.04
RTFDC1-207ENST00000477573 DHX16O60231 1041 aaKnown RBP15.32■□□□□ 0.04
RTFDC1-207ENST00000477573 HMGB1P09429 215 aaKnown RBP15.32■□□□□ 0.04
RTFDC1-207ENST00000477573 RASSF4Q9H2L5 321 aa15.32■□□□□ 0.04
RTFDC1-207ENST00000477573 KIF1CO43896 1103 aaKnown RBP15.31■□□□□ 0.04
RTFDC1-207ENST00000477573 GUCY2CP25092 1073 aa15.31■□□□□ 0.04
RTFDC1-207ENST00000477573 IL13P35225 146 aa15.31■□□□□ 0.04
RTFDC1-207ENST00000477573 FKBP5Q13451 457 aaPredicted RBP15.31■□□□□ 0.04
RTFDC1-207ENST00000477573 RSPH14Q9UHP6 348 aa15.31■□□□□ 0.04
RTFDC1-207ENST00000477573 CTNNA3Q9UI47 895 aa15.31■□□□□ 0.04
RTFDC1-207ENST00000477573 RGPD8O14715 1765 aaPredicted RBP15.31■□□□□ 0.04
RTFDC1-207ENST00000477573 IL16Q14005 1332 aa15.31■□□□□ 0.04
RTFDC1-207ENST00000477573 RRS1Q15050 365 aaKnown RBP15.31■□□□□ 0.04
RTFDC1-207ENST00000477573 KIF16BQ96L93 1317 aa15.3■□□□□ 0.04
RTFDC1-207ENST00000477573 SPRYD3Q8NCJ5 442 aa15.3■□□□□ 0.04
RTFDC1-207ENST00000477573 LRRC7Q96NW7 1537 aa15.3■□□□□ 0.04
RTFDC1-207ENST00000477573 USP31Q70CQ4 1352 aa15.3■□□□□ 0.04
RTFDC1-207ENST00000477573 NALCNQ8IZF0 1738 aa15.29■□□□□ 0.04
RTFDC1-207ENST00000477573 CT47B1P0C2W7 299 aaPredicted RBP15.29■□□□□ 0.04
RTFDC1-207ENST00000477573 PRKAR2BP31323 418 aa15.29■□□□□ 0.04
RTFDC1-207ENST00000477573 SPTLC3Q9NUV7 552 aa15.29■□□□□ 0.04
RTFDC1-207ENST00000477573 CHAF1AQ13111 956 aaPredicted RBP15.29■□□□□ 0.04
RTFDC1-207ENST00000477573 JARID2Q92833 1246 aaPredicted RBP15.29■□□□□ 0.04
RTFDC1-207ENST00000477573 NOLC1Q14978 699 aaKnown RBP eCLIP15.28■□□□□ 0.042e-9■■□□□ 13.8
RTFDC1-207ENST00000477573 KRT222Q8N1A0 295 aa15.28■□□□□ 0.04
RTFDC1-207ENST00000477573 DONSONQ9NYP3 566 aa15.28■□□□□ 0.04
RTFDC1-207ENST00000477573 DDX49Q9Y6V7 483 aaKnown RBP15.28■□□□□ 0.04
RTFDC1-207ENST00000477573 RAD51AP2Q09MP3 1159 aa15.28■□□□□ 0.04
RTFDC1-207ENST00000477573 SNX21Q969T3 373 aa15.28■□□□□ 0.04
RTFDC1-207ENST00000477573 TRIM35Q9UPQ4 493 aa15.28■□□□□ 0.04
RTFDC1-207ENST00000477573 ADGRL3Q9HAR2 1447 aa15.27■□□□□ 0.04
RTFDC1-207ENST00000477573 RBSNQ9H1K0 784 aa15.27■□□□□ 0.04
RTFDC1-207ENST00000477573 MAP2K1Q02750 393 aaPredicted RBP15.26■□□□□ 0.03
RTFDC1-207ENST00000477573 NFE2L2Q16236 605 aa15.26■□□□□ 0.03
RTFDC1-207ENST00000477573 MNS1Q8NEH6 495 aa15.26■□□□□ 0.03
RTFDC1-207ENST00000477573 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP15.26■□□□□ 0.035e-6■■□□□ 11.7
RTFDC1-207ENST00000477573 BCAR3O75815 825 aa15.26■□□□□ 0.03
RTFDC1-207ENST00000477573 HMOX1P09601 288 aa15.26■□□□□ 0.03
RTFDC1-207ENST00000477573 TAOK2Q9UL54 1235 aa15.26■□□□□ 0.03
RTFDC1-207ENST00000477573 PDE3AQ14432 1141 aa15.25■□□□□ 0.03
RTFDC1-207ENST00000477573 GOLGA6L6A8MZA4 724 aa15.25■□□□□ 0.03
Retrieved 100 of 20,778 RNA–protein pairs in 33.6 ms