RNA–Protein interactions for RNA: ENST00000476379.5

CCDC39-204, Transcript of coiled-coil domain containing 39, humanhuman

TSL 2

Gene CCDC39, Length 4,451 nt, Biotype nonsense mediated decay.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-204ENST00000476379 DDX11Q96FC9 970 aa6.06□□□□□ -1.44
CCDC39-204ENST00000476379 TOMM22Q9NS69 142 aa6.06□□□□□ -1.44
CCDC39-204ENST00000476379 PLEKHG1Q9ULL1 1385 aa6.06□□□□□ -1.44
CCDC39-204ENST00000476379 HMMRO75330 724 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 ZFYVE9O95405 1425 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 ZRSR1Q15695 479 aaKnown RBP6.05□□□□□ -1.44
CCDC39-204ENST00000476379 NBPF6Q5VWK0 638 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 NBPF4Q96M43 638 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 DIAPH3Q9NSV4 1193 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 NEXMIFQ5QGS0 1516 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 CEP170BQ9Y4F5 1589 aaPredicted RBP6.05□□□□□ -1.44
CCDC39-204ENST00000476379 KIAA2012Q0VF49 1180 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 INTS3Q68E01 1043 aaKnown RBP6.05□□□□□ -1.44
CCDC39-204ENST00000476379 DNAJC2Q99543 621 aaKnown RBP6.05□□□□□ -1.44
CCDC39-204ENST00000476379 USP25Q9UHP3 1055 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 ZHX1Q9UKY1 873 aaPredicted RBP6.05□□□□□ -1.44
CCDC39-204ENST00000476379 NLRP1Q9C000 1473 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 ATP2B1P20020 1258 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 GUCY1B3Q02153 619 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 CCDC24Q8N4L8 307 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 LRRC2Q9BYS8 371 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 TEFQ10587 303 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 EIF4A2Q14240 407 aaKnown RBP6.05□□□□□ -1.44
CCDC39-204ENST00000476379 KLHL34Q8N239 644 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 CERKQ8TCT0 537 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 ANKRD24Q8TF21 1146 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 NEUROD6Q96NK8 337 aa6.05□□□□□ -1.44
CCDC39-204ENST00000476379 KIAA0232Q92628 1395 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 SRGAP3O43295 1099 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 PRIM1P49642 420 aaKnown RBP6.04□□□□□ -1.44
CCDC39-204ENST00000476379 SKIDA1Q1XH10 827 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 WDR63Q8IWG1 891 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 CKAP2LQ8IYA6 745 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 NECAB1Q8N987 351 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 EYA1Q99502 592 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 API5Q9BZZ5 524 aaKnown RBP6.04□□□□□ -1.44
CCDC39-204ENST00000476379 TFIP11Q9UBB9 837 aaKnown RBP6.04□□□□□ -1.44
CCDC39-204ENST00000476379 MTMR7Q9Y216 660 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 LRRFIP2Q9Y608 721 aaKnown RBP6.04□□□□□ -1.44
CCDC39-204ENST00000476379 ASXL1Q8IXJ9 1541 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 PRAMEF22A3QJZ6 481 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 UBTFL1P0CB47 393 aaPredicted RBP6.04□□□□□ -1.44
CCDC39-204ENST00000476379 SDSP20132 328 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 CCDC83Q8IWF9 413 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 BICD2Q8TD16 824 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 KCNQ3O43525 872 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 PDE4CQ08493 712 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 CCAR2Q8N163 923 aaKnown RBP6.04□□□□□ -1.44
CCDC39-204ENST00000476379 CCDC8Q9H0W5 538 aaPredicted RBP6.04□□□□□ -1.44
CCDC39-204ENST00000476379 TRIM35Q9UPQ4 493 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 ARHGAP31Q2M1Z3 1444 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 ADGRB3O60242 1522 aa6.04□□□□□ -1.44
CCDC39-204ENST00000476379 SPDYE4A6NLX3 237 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 BAG4O95429 457 aaKnown RBP6.03□□□□□ -1.44
CCDC39-204ENST00000476379 HDGFL1Q5TGJ6 251 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 TTC12Q9H892 705 aaPredicted RBP6.03□□□□□ -1.44
CCDC39-204ENST00000476379 LGR6Q9HBX8 967 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 KIF1BO60333 1816 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 REC8O95072 547 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 ISM2Q6H9L7 571 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 PKNOX2Q96KN3 472 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 TMX1Q9H3N1 280 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 ABCC11Q96J66 1382 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 TMEM131LA2VDJ0 1609 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 USP19O94966 1318 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 UQCRHLA0A096LP55 91 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 UQCRHP07919 91 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 NFE2L2Q16236 605 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 GORABQ5T7V8 394 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 ZMYND15Q9H091 742 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 PA2G4Q9UQ80 394 aaKnown RBP6.03□□□□□ -1.44
CCDC39-204ENST00000476379 SMC3Q9UQE7 1217 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 ADGRL3Q9HAR2 1447 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 CBX1P83916 185 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 HSP90AA4PQ58FG1 418 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 FAM177A1Q8N128 213 aaPredicted RBP6.03□□□□□ -1.44
CCDC39-204ENST00000476379 KLHDC4Q8TBB5 520 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 TRERF1Q96PN7 1200 aa6.03□□□□□ -1.44
CCDC39-204ENST00000476379 IFIT2P09913 472 aaKnown RBP6.02□□□□□ -1.45
CCDC39-204ENST00000476379 HCLS1P14317 486 aaPredicted RBP6.02□□□□□ -1.45
CCDC39-204ENST00000476379 BOLA2Q9H3K6 86 aa6.02□□□□□ -1.45
CCDC39-204ENST00000476379 IFT57Q9NWB7 429 aa6.02□□□□□ -1.45
CCDC39-204ENST00000476379 A0A087WWV3 80 aa6.02□□□□□ -1.45
CCDC39-204ENST00000476379 ZNF530Q6P9A1 599 aaPredicted RBP6.02□□□□□ -1.45
CCDC39-204ENST00000476379 GIMAP6Q6P9H5 292 aa6.02□□□□□ -1.45
CCDC39-204ENST00000476379 ERCC4Q92889 916 aaPredicted RBP6.02□□□□□ -1.45
CCDC39-204ENST00000476379 H3BQV1 296 aa6.02□□□□□ -1.45
CCDC39-204ENST00000476379 IFFO2Q5TF58 517 aa6.02□□□□□ -1.45
CCDC39-204ENST00000476379 PRPF40BQ6NWY9 871 aaKnown RBP6.02□□□□□ -1.45
CCDC39-204ENST00000476379 PPP1R1BQ9UD71 204 aaPredicted RBP6.02□□□□□ -1.45
CCDC39-204ENST00000476379 NOL12Q9UGY1 213 aaKnown RBP eCLIP6.02□□□□□ -1.45
CCDC39-204ENST00000476379 V9GYY5 206 aaPredicted RBP6.02□□□□□ -1.45
CCDC39-204ENST00000476379 AGLP35573 1532 aa6.02□□□□□ -1.45
CCDC39-204ENST00000476379 CASTP20810 708 aaKnown RBP6.01□□□□□ -1.45
CCDC39-204ENST00000476379 CHMP4BQ9H444 224 aaKnown RBP6.01□□□□□ -1.45
CCDC39-204ENST00000476379 VWDEQ8N2E2 1590 aa6.01□□□□□ -1.45
CCDC39-204ENST00000476379 KCNQ2O43526 872 aa6.01□□□□□ -1.45
CCDC39-204ENST00000476379 GNL2Q13823 731 aaKnown RBP6.01□□□□□ -1.45
CCDC39-204ENST00000476379 TAF7Q15545 349 aaPredicted RBP6.01□□□□□ -1.45
CCDC39-204ENST00000476379 HSP90AB3PQ58FF7 597 aa6.01□□□□□ -1.45
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms