RNA–Protein interactions for RNA: ENST00000474644.1

COL1A1-204, Transcript of collagen type I alpha 1 chain, humanhuman

TSL 3

Gene COL1A1, Length 640 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL1A1-204ENST00000474644 MCM10Q7L590 875 aa20.78■□□□□ 0.92
COL1A1-204ENST00000474644 NFATC2IPQ8NCF5 419 aa20.78■□□□□ 0.92
COL1A1-204ENST00000474644 PALLDQ8WX93 1383 aa20.77■□□□□ 0.92
COL1A1-204ENST00000474644 RIPK4P57078 832 aa20.77■□□□□ 0.92
COL1A1-204ENST00000474644 DCTN1Q14203 1278 aa20.77■□□□□ 0.92
COL1A1-204ENST00000474644 EZH2Q15910 746 aaKnown RBP20.77■□□□□ 0.92
COL1A1-204ENST00000474644 KAT6BQ8WYB5 2073 aa20.76■□□□□ 0.91
COL1A1-204ENST00000474644 PAPPAQ13219 1627 aa20.76■□□□□ 0.91
COL1A1-204ENST00000474644 APAF1O14727 1248 aa20.76■□□□□ 0.91
COL1A1-204ENST00000474644 SIPA1L3O60292 1781 aaPredicted RBP20.75■□□□□ 0.91
COL1A1-204ENST00000474644 TEFQ10587 303 aa20.75■□□□□ 0.91
COL1A1-204ENST00000474644 LY75O60449 1722 aa20.75■□□□□ 0.91
COL1A1-204ENST00000474644 LMOD3Q0VAK6 560 aa20.74■□□□□ 0.91
COL1A1-204ENST00000474644 NEUROD2Q15784 382 aa20.74■□□□□ 0.91
COL1A1-204ENST00000474644 ATG3Q9NT62 314 aa20.74■□□□□ 0.91
COL1A1-204ENST00000474644 ASAP1Q9ULH1 1129 aa20.74■□□□□ 0.91
COL1A1-204ENST00000474644 NUP188Q5SRE5 1749 aa20.73■□□□□ 0.91
COL1A1-204ENST00000474644 TXNRD1Q16881 649 aa20.73■□□□□ 0.91
COL1A1-204ENST00000474644 PROM2Q8N271 834 aa20.73■□□□□ 0.91
COL1A1-204ENST00000474644 SMARCC1Q92922 1105 aaPredicted RBP20.73■□□□□ 0.91
COL1A1-204ENST00000474644 THUMPD2Q9BTF0 503 aaKnown RBP20.73■□□□□ 0.91
COL1A1-204ENST00000474644 TRIM35Q9UPQ4 493 aa20.72■□□□□ 0.91
COL1A1-204ENST00000474644 KCPQ6ZWJ8 1503 aa20.69■□□□□ 0.9
COL1A1-204ENST00000474644 SENP3-EIF4A1A0A087X0R7 540 aa20.69■□□□□ 0.9
COL1A1-204ENST00000474644 SLC27A3Q5K4L6 730 aa20.69■□□□□ 0.9
COL1A1-204ENST00000474644 CCNL1Q9UK58 526 aaPredicted RBP20.69■□□□□ 0.9
COL1A1-204ENST00000474644 SLC39A6Q13433 755 aa20.68■□□□□ 0.9
COL1A1-204ENST00000474644 LRRC4BQ9NT99 713 aa20.68■□□□□ 0.9
COL1A1-204ENST00000474644 UBR2Q8IWV8 1755 aa20.67■□□□□ 0.9
COL1A1-204ENST00000474644 BTBD11A6QL63 1104 aa20.67■□□□□ 0.9
COL1A1-204ENST00000474644 LOC102724428A0A0B4J2F2 783 aa20.66■□□□□ 0.9
COL1A1-204ENST00000474644 KCNQ4P56696 695 aa20.66■□□□□ 0.9
COL1A1-204ENST00000474644 SIK1P57059 783 aa20.66■□□□□ 0.9
COL1A1-204ENST00000474644 TAF7Q15545 349 aaPredicted RBP20.66■□□□□ 0.9
COL1A1-204ENST00000474644 C5P01031 1676 aa20.65■□□□□ 0.9
COL1A1-204ENST00000474644 ZNF831Q5JPB2 1677 aa20.65■□□□□ 0.9
COL1A1-204ENST00000474644 CICQ96RK0 1608 aaPredicted RBP20.65■□□□□ 0.9
COL1A1-204ENST00000474644 PTCD1O75127 700 aaKnown RBP20.65■□□□□ 0.9
COL1A1-204ENST00000474644 ZNF790Q6PG37 636 aa20.65■□□□□ 0.9
COL1A1-204ENST00000474644 TTC5Q8N0Z6 440 aa20.65■□□□□ 0.9
COL1A1-204ENST00000474644 RBM42Q9BTD8 480 aaKnown RBP20.65■□□□□ 0.9
COL1A1-204ENST00000474644 KDM3BQ7LBC6 1761 aa20.64■□□□□ 0.9
COL1A1-204ENST00000474644 CCDC27Q2M243 656 aa20.64■□□□□ 0.89
COL1A1-204ENST00000474644 NCBP3Q53F19 620 aaKnown RBP20.64■□□□□ 0.89
COL1A1-204ENST00000474644 SLC4A9Q96Q91 983 aa20.64■□□□□ 0.89
COL1A1-204ENST00000474644 ANO8Q9HCE9 1232 aaPredicted RBP20.63■□□□□ 0.89
COL1A1-204ENST00000474644 TJP1Q07157 1748 aa20.63■□□□□ 0.89
COL1A1-204ENST00000474644 KCNQ3O43525 872 aa20.62■□□□□ 0.89
COL1A1-204ENST00000474644 ATP6V1AP38606 617 aa20.62■□□□□ 0.89
COL1A1-204ENST00000474644 ITPK1Q13572 414 aa20.62■□□□□ 0.89
COL1A1-204ENST00000474644 MIS18AQ9NYP9 233 aa20.62■□□□□ 0.89
COL1A1-204ENST00000474644 ZNF496Q96IT1 587 aaPredicted RBP20.61■□□□□ 0.89
COL1A1-204ENST00000474644 TAF1LQ8IZX4 1826 aa20.6■□□□□ 0.89
COL1A1-204ENST00000474644 WWC1Q8IX03 1113 aa20.6■□□□□ 0.89
COL1A1-204ENST00000474644 SALL2Q9Y467 1007 aaPredicted RBP20.6■□□□□ 0.89
COL1A1-204ENST00000474644 COL5A3P25940 1745 aaPredicted RBP20.6■□□□□ 0.89
COL1A1-204ENST00000474644 HEG1Q9ULI3 1381 aa20.59■□□□□ 0.89
COL1A1-204ENST00000474644 C4BP0C0L5 1744 aa20.59■□□□□ 0.89
COL1A1-204ENST00000474644 CALD1Q05682 793 aaKnown RBP20.59■□□□□ 0.89
COL1A1-204ENST00000474644 ZNF827Q17R98 1081 aa20.59■□□□□ 0.89
COL1A1-204ENST00000474644 NBPF14Q5TI25 921 aa20.59■□□□□ 0.89
COL1A1-204ENST00000474644 LINC00116Q8NCU8 138 aa20.59■□□□□ 0.89
COL1A1-204ENST00000474644 FMNL2Q96PY5 1086 aa20.59■□□□□ 0.89
COL1A1-204ENST00000474644 BABAM1Q9NWV8 329 aa20.59■□□□□ 0.89
COL1A1-204ENST00000474644 TSPYL4Q9UJ04 414 aa20.59■□□□□ 0.89
COL1A1-204ENST00000474644 LRP5O75197 1615 aa20.59■□□□□ 0.89
COL1A1-204ENST00000474644 VSIG10Q8N0Z9 540 aa20.58■□□□□ 0.89
COL1A1-204ENST00000474644 NGEFQ8N5V2 710 aa20.58■□□□□ 0.89
COL1A1-204ENST00000474644 AKT1S1Q96B36 256 aa20.58■□□□□ 0.89
COL1A1-204ENST00000474644 STK32BQ9NY57 414 aa20.58■□□□□ 0.89
COL1A1-204ENST00000474644 CHL1O00533 1208 aa20.57■□□□□ 0.88
COL1A1-204ENST00000474644 LAS1LQ9Y4W2 734 aaKnown RBP20.57■□□□□ 0.88
COL1A1-204ENST00000474644 ZNF853P0CG23 659 aa20.56■□□□□ 0.88
COL1A1-204ENST00000474644 SLC15A2Q16348 729 aa20.56■□□□□ 0.88
COL1A1-204ENST00000474644 DNAJC10Q8IXB1 793 aa20.56■□□□□ 0.88
COL1A1-204ENST00000474644 CFAP44Q96MT7 982 aa20.56■□□□□ 0.88
COL1A1-204ENST00000474644 IFT57Q9NWB7 429 aa20.56■□□□□ 0.88
COL1A1-204ENST00000474644 HMGB2P26583 209 aaKnown RBP20.55■□□□□ 0.88
COL1A1-204ENST00000474644 EIF4A1P60842 406 aaKnown RBP20.55■□□□□ 0.88
COL1A1-204ENST00000474644 PSDA5PKW4 1024 aaPredicted RBP20.54■□□□□ 0.88
COL1A1-204ENST00000474644 GNAI1P63096 354 aa20.54■□□□□ 0.88
COL1A1-204ENST00000474644 R3HDM1Q15032 1099 aaKnown RBP20.54■□□□□ 0.88
COL1A1-204ENST00000474644 IL16Q14005 1332 aa20.53■□□□□ 0.88
COL1A1-204ENST00000474644 ZNF521Q96K83 1311 aa20.53■□□□□ 0.88
COL1A1-204ENST00000474644 CNTNAP4Q9C0A0 1308 aa20.53■□□□□ 0.88
COL1A1-204ENST00000474644 MBIPQ9NS73 344 aa20.53■□□□□ 0.88
COL1A1-204ENST00000474644 TUBGCP6Q96RT7 1819 aa20.53■□□□□ 0.88
COL1A1-204ENST00000474644 SNRPA1P09661 255 aaKnown RBP20.52■□□□□ 0.88
COL1A1-204ENST00000474644 CYP19A1P11511 503 aaPredicted RBP20.52■□□□□ 0.88
COL1A1-204ENST00000474644 WDR63Q8IWG1 891 aa20.52■□□□□ 0.88
COL1A1-204ENST00000474644 AK7Q96M32 723 aa20.52■□□□□ 0.88
COL1A1-204ENST00000474644 QSER1Q2KHR3 1735 aa20.51■□□□□ 0.87
COL1A1-204ENST00000474644 PRAMEF22A3QJZ6 481 aa20.51■□□□□ 0.87
COL1A1-204ENST00000474644 CRKLP46109 303 aaKnown RBP20.51■□□□□ 0.87
COL1A1-204ENST00000474644 TFCP2L1Q9NZI6 479 aa20.51■□□□□ 0.87
COL1A1-204ENST00000474644 LAMB4A4D0S4 1761 aa20.51■□□□□ 0.87
COL1A1-204ENST00000474644 RC3H1Q5TC82 1133 aaKnown RBP20.5■□□□□ 0.87
COL1A1-204ENST00000474644 TEX13AQ9BXU3 409 aaPredicted RBP20.5■□□□□ 0.87
COL1A1-204ENST00000474644 PNPLA7Q6ZV29 1317 aa20.5■□□□□ 0.87
COL1A1-204ENST00000474644 GNPATO15228 680 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 28.6 ms