RNA–Protein interactions for RNA: ENST00000473258.1

COL6A3-210, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 5,433 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-210ENST00000473258 SMIM24O75264 130 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 PSMC4P43686 418 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 A6NNZ2 444 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 HLTFQ14527 1009 aaKnown RBP eCLIP10.43□□□□□ -0.74
COL6A3-210ENST00000473258 TUBB8Q3ZCM7 444 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 NBPF6Q5VWK0 638 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 CTAGE6Q86UF2 777 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 NBPF5PQ86XG9 351 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-210ENST00000473258 NBPF4Q96M43 638 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 PPFIA2O75334 1257 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 CASTP20810 708 aaKnown RBP10.43□□□□□ -0.74
COL6A3-210ENST00000473258 FOSBP53539 338 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 CPLX4Q7Z7G2 160 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 JMYQ8N9B5 988 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 CTNNBL1Q8WYA6 563 aaPredicted RBP10.43□□□□□ -0.74
COL6A3-210ENST00000473258 IFT74Q96LB3 600 aa10.43□□□□□ -0.74
COL6A3-210ENST00000473258 ZSWIM4Q9H7M6 989 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 NDUFAB1O14561 156 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 ZEB2O60315 1214 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 GNG11P61952 73 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 DESP17661 470 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 SLC8A1P32418 973 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 LRRD1A4D1F6 860 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 CASQ2O14958 399 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-210ENST00000473258 CHMP2AO43633 222 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 USO1O60763 962 aaKnown RBP10.42□□□□□ -0.74
COL6A3-210ENST00000473258 DNAJC8O75937 253 aaPredicted RBP10.42□□□□□ -0.74
COL6A3-210ENST00000473258 SF3B2Q13435 895 aaKnown RBP10.42□□□□□ -0.74
COL6A3-210ENST00000473258 INF2Q27J81 1249 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 ARMC9Q7Z3E5 817 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 TNPO1Q92973 898 aaKnown RBP10.42□□□□□ -0.74
COL6A3-210ENST00000473258 VCX3BQ9H321 246 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 VCX3AQ9NNX9 186 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 SERPINA10Q9UK55 444 aa10.42□□□□□ -0.74
COL6A3-210ENST00000473258 MYCNP04198 464 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-210ENST00000473258 TOP1P11387 765 aaKnown RBP10.41□□□□□ -0.74
COL6A3-210ENST00000473258 E2F4Q16254 413 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 CCDC65Q8IXS2 484 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 CWC25Q9NXE8 425 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-210ENST00000473258 GMNNO75496 209 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 ZBTB9Q96C00 473 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 ERO1AQ96HE7 468 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 ZNF830Q96NB3 372 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-210ENST00000473258 DDX23Q9BUQ8 820 aaKnown RBP10.41□□□□□ -0.74
COL6A3-210ENST00000473258 LUC7L3O95232 432 aaKnown RBP10.41□□□□□ -0.74
COL6A3-210ENST00000473258 GBP1P32455 592 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 NUCB1Q02818 461 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 LRRC43Q8N309 656 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 CCDC12Q8WUD4 166 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-210ENST00000473258 TRIM6Q9C030 488 aaPredicted RBP10.41□□□□□ -0.74
COL6A3-210ENST00000473258 NOL7Q9UMY1 257 aaKnown RBP10.41□□□□□ -0.74
COL6A3-210ENST00000473258 PSMA5P28066 241 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 HDXQ7Z353 690 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 SH3GL3Q99963 347 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 NCAPGQ9BPX3 1015 aa10.41□□□□□ -0.74
COL6A3-210ENST00000473258 MAP3K9P80192 1104 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 CTCFLQ8NI51 663 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-210ENST00000473258 GOLGA1Q92805 767 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 PPP1R1BQ9UD71 204 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-210ENST00000473258 ODF2LQ9ULJ1 636 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 CTAGE15A4D2H0 777 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 FAM177BA6PVY3 158 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 CTAGE8P0CG41 777 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 ME1P48163 572 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 CTAGE4Q8IX94 777 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 SPATA32Q96LK8 384 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 ANO10Q9NW15 660 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 KIF15Q9NS87 1388 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 VPS53Q5VIR6 699 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 NGEFQ8N5V2 710 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 ZNF513Q8N8E2 541 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-210ENST00000473258 AFAP1L1Q8TED9 768 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 MCTP2Q6DN12 878 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 FAF1Q9UNN5 650 aaPredicted RBP10.4□□□□□ -0.74
COL6A3-210ENST00000473258 PDZRN3Q9UPQ7 1066 aa10.4□□□□□ -0.74
COL6A3-210ENST00000473258 SETDB1Q15047 1291 aa10.4□□□□□ -0.75
COL6A3-210ENST00000473258 DNAI1Q9UI46 699 aa10.4□□□□□ -0.75
COL6A3-210ENST00000473258 STMN2Q93045 179 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 SMC6Q96SB8 1091 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 SLC24A3Q9HC58 644 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 CREB3O43889 395 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 HSP90AB4PQ58FF6 505 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 RASIP1Q5U651 963 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 LRSAM1Q6UWE0 723 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 CCDC150Q8NCX0 1101 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 TTC12Q9H892 705 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-210ENST00000473258 EPB41L3Q9Y2J2 1087 aaPredicted RBP10.39□□□□□ -0.75
COL6A3-210ENST00000473258 STMN1P16949 149 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 RANBP1P43487 201 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 SPA17Q15506 151 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 SOGA3Q5TF21 947 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 RUFY3Q7L099 469 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 KLHDC4Q8TBB5 520 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 BAIAP2L1Q9UHR4 511 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 CEBPZQ03701 1054 aaKnown RBP10.39□□□□□ -0.75
COL6A3-210ENST00000473258 SAMD15Q9P1V8 674 aa10.39□□□□□ -0.75
COL6A3-210ENST00000473258 PNMA8AQ86V59 439 aaPredicted RBP10.38□□□□□ -0.75
COL6A3-210ENST00000473258 SAAL1Q96ER3 474 aa10.38□□□□□ -0.75
COL6A3-210ENST00000473258 TTC14Q96N46 770 aa10.38□□□□□ -0.75
COL6A3-210ENST00000473258 SESN3P58005 492 aa10.38□□□□□ -0.75
Retrieved 100 of 20,778 RNA–protein pairs in 25.6 ms