RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 USP17L2Q6R6M4 530 aa11.8□□□□□ -0.52
CCDC39-202ENST00000471307 USP17L1Q7RTZ2 530 aa11.8□□□□□ -0.52
CCDC39-202ENST00000471307 PPARGC1BQ86YN6 1023 aaKnown RBP11.8□□□□□ -0.52
CCDC39-202ENST00000471307 TIMMDC1Q9NPL8 285 aa11.8□□□□□ -0.52
CCDC39-202ENST00000471307 H7C1W4 665 aa11.79□□□□□ -0.52
CCDC39-202ENST00000471307 RHBDD1Q8TEB9 315 aa11.79□□□□□ -0.52
CCDC39-202ENST00000471307 SLC4A9Q96Q91 983 aa11.79□□□□□ -0.52
CCDC39-202ENST00000471307 CDC14CA4D256 554 aa11.78□□□□□ -0.52
CCDC39-202ENST00000471307 TMEM229AB2RXF0 380 aa11.78□□□□□ -0.52
CCDC39-202ENST00000471307 STAU1O95793 577 aaKnown RBP11.78□□□□□ -0.52
CCDC39-202ENST00000471307 ATP1A2P50993 1020 aa11.78□□□□□ -0.52
CCDC39-202ENST00000471307 SMTNP53814 917 aa11.78□□□□□ -0.52
CCDC39-202ENST00000471307 TRIM22Q8IYM9 498 aa11.78□□□□□ -0.52
CCDC39-202ENST00000471307 DEPDC4Q8N2C3 294 aa11.78□□□□□ -0.52
CCDC39-202ENST00000471307 VWA5B2Q8N398 1253 aa11.78□□□□□ -0.52
CCDC39-202ENST00000471307 CALR3Q96L12 384 aaKnown RBP11.78□□□□□ -0.52
CCDC39-202ENST00000471307 A0A1B0GTH6 734 aa11.77□□□□□ -0.53
CCDC39-202ENST00000471307 BACH1O14867 736 aa11.77□□□□□ -0.53
CCDC39-202ENST00000471307 GPR161Q8N6U8 529 aaKnown RBP11.77□□□□□ -0.53
CCDC39-202ENST00000471307 F11P03951 625 aa11.76□□□□□ -0.53
CCDC39-202ENST00000471307 MTFR1Q15390 333 aa11.76□□□□□ -0.53
CCDC39-202ENST00000471307 STK17AQ9UEE5 414 aa11.76□□□□□ -0.53
CCDC39-202ENST00000471307 PSME1Q06323 249 aa11.75□□□□□ -0.53
CCDC39-202ENST00000471307 C4orf17Q53FE4 359 aa11.75□□□□□ -0.53
CCDC39-202ENST00000471307 GAS2L1Q99501 681 aaPredicted RBP11.75□□□□□ -0.53
CCDC39-202ENST00000471307 RIPOR1Q6ZS17 1223 aa11.74□□□□□ -0.53
CCDC39-202ENST00000471307 ZNF837Q96EG3 531 aaPredicted RBP11.74□□□□□ -0.53
CCDC39-202ENST00000471307 CUEDC1Q9NWM3 386 aaPredicted RBP11.74□□□□□ -0.53
CCDC39-202ENST00000471307 A6NJY4 79 aa11.73□□□□□ -0.53
CCDC39-202ENST00000471307 FOXR1Q6PIV2 292 aa11.73□□□□□ -0.53
CCDC39-202ENST00000471307 ZSCAN1Q8NBB4 408 aa11.73□□□□□ -0.53
CCDC39-202ENST00000471307 COL25A1Q9BXS0 654 aaPredicted RBP11.73□□□□□ -0.53
CCDC39-202ENST00000471307 TFIP11Q9UBB9 837 aaKnown RBP11.73□□□□□ -0.53
CCDC39-202ENST00000471307 MAFBQ9Y5Q3 323 aaPredicted RBP11.73□□□□□ -0.53
CCDC39-202ENST00000471307 PALM3A6NDB9 673 aaPredicted RBP11.72□□□□□ -0.53
CCDC39-202ENST00000471307 CDK2AP1O14519 115 aa11.72□□□□□ -0.53
CCDC39-202ENST00000471307 LBRQ14739 615 aaKnown RBP11.72□□□□□ -0.53
CCDC39-202ENST00000471307 LARGE2Q8N3Y3 721 aa11.72□□□□□ -0.53
CCDC39-202ENST00000471307 NIFKQ9BYG3 293 aaKnown RBP11.72□□□□□ -0.53
CCDC39-202ENST00000471307 MKRN1Q9UHC7 482 aaKnown RBP11.72□□□□□ -0.53
CCDC39-202ENST00000471307 SERTAD1Q9UHV2 236 aa11.72□□□□□ -0.53
CCDC39-202ENST00000471307 FAM181BA6NEQ2 426 aa11.71□□□□□ -0.53
CCDC39-202ENST00000471307 PHKA2P46019 1235 aa11.71□□□□□ -0.53
CCDC39-202ENST00000471307 DBN1Q16643 649 aa11.71□□□□□ -0.53
CCDC39-202ENST00000471307 PPP1R12CQ9BZL4 782 aa11.71□□□□□ -0.53
CCDC39-202ENST00000471307 DNAAF2Q9NVR5 837 aaKnown RBP11.71□□□□□ -0.53
CCDC39-202ENST00000471307 ZNF358Q9NW07 568 aa11.71□□□□□ -0.53
CCDC39-202ENST00000471307 ZBTB7BO15156 539 aaPredicted RBP11.7□□□□□ -0.54
CCDC39-202ENST00000471307 LORP23490 312 aaPredicted RBP11.7□□□□□ -0.54
CCDC39-202ENST00000471307 CLDN10P78369 228 aa11.7□□□□□ -0.54
CCDC39-202ENST00000471307 KRT76Q01546 638 aa11.7□□□□□ -0.54
CCDC39-202ENST00000471307 C1orf216Q8TAB5 229 aa11.7□□□□□ -0.54
CCDC39-202ENST00000471307 IQSEC3Q9UPP2 1182 aaPredicted RBP11.7□□□□□ -0.54
CCDC39-202ENST00000471307 GTF3C3Q9Y5Q9 886 aa11.7□□□□□ -0.54
CCDC39-202ENST00000471307 M0R2N6 131 aa11.69□□□□□ -0.54
CCDC39-202ENST00000471307 SIX5Q8N196 739 aa11.69□□□□□ -0.54
CCDC39-202ENST00000471307 OGFOD1Q8N543 542 aa11.69□□□□□ -0.54
CCDC39-202ENST00000471307 SERBP1Q8NC51 408 aaKnown RBP eCLIP11.69□□□□□ -0.54
CCDC39-202ENST00000471307 CNTNAP3BQ96NU0 1288 aa11.69□□□□□ -0.54
CCDC39-202ENST00000471307 CNTNAP3Q9BZ76 1288 aa11.69□□□□□ -0.54
CCDC39-202ENST00000471307 NUCKS1Q9H1E3 243 aaKnown RBP11.69□□□□□ -0.54
CCDC39-202ENST00000471307 CCDC102BQ68D86 513 aa11.68□□□□□ -0.54
CCDC39-202ENST00000471307 ZNF295-AS1Q8N0V1 137 aa11.68□□□□□ -0.54
CCDC39-202ENST00000471307 TPCN2Q8NHX9 752 aa11.68□□□□□ -0.54
CCDC39-202ENST00000471307 SCHIP1Q9P0W5 487 aaPredicted RBP11.68□□□□□ -0.54
CCDC39-202ENST00000471307 CSB-PGBD3P0DP91 1061 aa11.67□□□□□ -0.54
CCDC39-202ENST00000471307 PLA2G4AP47712 749 aa11.67□□□□□ -0.54
CCDC39-202ENST00000471307 RNFT1Q5M7Z0 435 aa11.67□□□□□ -0.54
CCDC39-202ENST00000471307 PGBD3Q8N328 593 aa11.67□□□□□ -0.54
CCDC39-202ENST00000471307 TRERF1Q96PN7 1200 aa11.67□□□□□ -0.54
CCDC39-202ENST00000471307 CRISPLD1Q9H336 500 aa11.67□□□□□ -0.54
CCDC39-202ENST00000471307 MSX1P28360 303 aa11.66□□□□□ -0.54
CCDC39-202ENST00000471307 EPHA4P54764 986 aa11.66□□□□□ -0.54
CCDC39-202ENST00000471307 ZMYND15Q9H091 742 aa11.66□□□□□ -0.54
CCDC39-202ENST00000471307 GPAMQ9HCL2 828 aa11.66□□□□□ -0.54
CCDC39-202ENST00000471307 ZNF777Q9ULD5 760 aaPredicted RBP11.66□□□□□ -0.54
CCDC39-202ENST00000471307 KIAA1024Q9UPX6 916 aa11.66□□□□□ -0.54
CCDC39-202ENST00000471307 RBM19Q9Y4C8 960 aaKnown RBP11.66□□□□□ -0.54
CCDC39-202ENST00000471307 FOXK2Q01167 660 aa11.65□□□□□ -0.54
CCDC39-202ENST00000471307 NBPF1Q3BBV0 1214 aa11.65□□□□□ -0.54
CCDC39-202ENST00000471307 ZDHHC3Q9NYG2 299 aa11.65□□□□□ -0.54
CCDC39-202ENST00000471307 SLURP2P0DP57 97 aa11.64□□□□□ -0.55
CCDC39-202ENST00000471307 SRSF11Q05519 484 aaKnown RBP11.64□□□□□ -0.55
CCDC39-202ENST00000471307 EFHC2Q5JST6 749 aa11.64□□□□□ -0.55
CCDC39-202ENST00000471307 GTPBP3Q969Y2 492 aaKnown RBP11.64□□□□□ -0.55
CCDC39-202ENST00000471307 CABP1Q9NZU7 370 aa11.64□□□□□ -0.55
CCDC39-202ENST00000471307 RASA1P20936 1047 aa11.63□□□□□ -0.55
CCDC39-202ENST00000471307 GAS6Q14393 721 aa11.63□□□□□ -0.55
CCDC39-202ENST00000471307 MBIPQ9NS73 344 aa11.63□□□□□ -0.55
CCDC39-202ENST00000471307 KANK4Q5T7N3 995 aaPredicted RBP11.62□□□□□ -0.55
CCDC39-202ENST00000471307 LARP1Q6PKG0 1096 aaKnown RBP11.62□□□□□ -0.55
CCDC39-202ENST00000471307 ZNF594Q96JF6 807 aaPredicted RBP11.62□□□□□ -0.55
CCDC39-202ENST00000471307 CFHR5Q9BXR6 569 aa11.62□□□□□ -0.55
CCDC39-202ENST00000471307 PHF24Q9UPV7 400 aa11.62□□□□□ -0.55
CCDC39-202ENST00000471307 USP3Q9Y6I4 520 aa11.62□□□□□ -0.55
CCDC39-202ENST00000471307 FAM196BA6NMK8 535 aa11.61□□□□□ -0.55
CCDC39-202ENST00000471307 DKK1O94907 266 aa11.61□□□□□ -0.55
CCDC39-202ENST00000471307 TATP17735 454 aaPredicted RBP11.61□□□□□ -0.55
CCDC39-202ENST00000471307 ATP4AP20648 1035 aa11.61□□□□□ -0.55
CCDC39-202ENST00000471307 LMOD1P29536 600 aaPredicted RBP11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 6.4 ms