RNA–Protein interactions for RNA: ENST00000469585.5

PTCD3-208, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 2

Gene PTCD3, Length 885 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-208ENST00000469585 OSBPL3Q9H4L5 887 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 PDZRN3Q9UPQ7 1066 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 KIAA1024Q9UPX6 916 aa10.09□□□□□ -0.79
PTCD3-208ENST00000469585 DKK1O94907 266 aa10.08□□□□□ -0.8
PTCD3-208ENST00000469585 ADD1P35611 737 aaKnown RBP10.08□□□□□ -0.8
PTCD3-208ENST00000469585 ATP1A2P50993 1020 aa10.08□□□□□ -0.8
PTCD3-208ENST00000469585 LARP1Q6PKG0 1096 aaKnown RBP10.08□□□□□ -0.8
PTCD3-208ENST00000469585 LARGE2Q8N3Y3 721 aa10.08□□□□□ -0.8
PTCD3-208ENST00000469585 TRIM52Q96A61 297 aa10.08□□□□□ -0.8
PTCD3-208ENST00000469585 ITPKCQ96DU7 683 aa10.08□□□□□ -0.8
PTCD3-208ENST00000469585 DNAAF2Q9NVR5 837 aaKnown RBP10.08□□□□□ -0.8
PTCD3-208ENST00000469585 ZMIZ1Q9ULJ6 1067 aa10.08□□□□□ -0.8
PTCD3-208ENST00000469585 IGF1RP08069 1367 aa10.07□□□□□ -0.8
PTCD3-208ENST00000469585 TIMP2P16035 220 aa10.07□□□□□ -0.8
PTCD3-208ENST00000469585 HPS1Q92902 700 aa10.07□□□□□ -0.8
PTCD3-208ENST00000469585 WDR4P57081 412 aaKnown RBP10.06□□□□□ -0.8
PTCD3-208ENST00000469585 SIX5Q8N196 739 aa10.06□□□□□ -0.8
PTCD3-208ENST00000469585 ZFAND3Q9H8U3 227 aa10.06□□□□□ -0.8
PTCD3-208ENST00000469585 NOVA2Q9UNW9 492 aaKnown RBP10.06□□□□□ -0.8
PTCD3-208ENST00000469585 ZIC2O95409 532 aaPredicted RBP10.05□□□□□ -0.8
PTCD3-208ENST00000469585 ANKMY2Q8IV38 441 aa10.05□□□□□ -0.8
PTCD3-208ENST00000469585 ZNF594Q96JF6 807 aaPredicted RBP10.05□□□□□ -0.8
PTCD3-208ENST00000469585 RAPGEF2Q9Y4G8 1499 aa10.04□□□□□ -0.8
PTCD3-208ENST00000469585 ARHGEF11O15085 1522 aa10.04□□□□□ -0.8
PTCD3-208ENST00000469585 TMEM88BA6NKF7 163 aa10.04□□□□□ -0.8
PTCD3-208ENST00000469585 CSB-PGBD3P0DP91 1061 aa10.04□□□□□ -0.8
PTCD3-208ENST00000469585 CBLBQ13191 982 aa10.04□□□□□ -0.8
PTCD3-208ENST00000469585 Q6ZVU0 165 aa10.04□□□□□ -0.8
PTCD3-208ENST00000469585 STK32AQ8WU08 396 aa10.04□□□□□ -0.8
PTCD3-208ENST00000469585 ESF1Q9H501 851 aaKnown RBP10.04□□□□□ -0.8
PTCD3-208ENST00000469585 NUP160Q12769 1436 aa10.03□□□□□ -0.8
PTCD3-208ENST00000469585 DPYDQ12882 1025 aa10.03□□□□□ -0.8
PTCD3-208ENST00000469585 TMEM164Q5U3C3 297 aa10.03□□□□□ -0.8
PTCD3-208ENST00000469585 CCDC102BQ68D86 513 aa10.03□□□□□ -0.8
PTCD3-208ENST00000469585 KDF1Q8NAX2 398 aaPredicted RBP10.03□□□□□ -0.8
PTCD3-208ENST00000469585 USTQ9Y2C2 406 aa10.03□□□□□ -0.8
PTCD3-208ENST00000469585 CLASP1Q7Z460 1538 aa10.02□□□□□ -0.8
PTCD3-208ENST00000469585 ADH1AP07327 375 aa10.02□□□□□ -0.81
PTCD3-208ENST00000469585 CYB5RLQ6IPT4 315 aa10.02□□□□□ -0.81
PTCD3-208ENST00000469585 CYP2U1Q7Z449 544 aa10.02□□□□□ -0.81
PTCD3-208ENST00000469585 TPCN2Q8NHX9 752 aa10.02□□□□□ -0.81
PTCD3-208ENST00000469585 RIMBP3CA6NJZ7 1639 aa10.02□□□□□ -0.81
PTCD3-208ENST00000469585 RIMBP3BA6NNM3 1639 aa10.02□□□□□ -0.81
PTCD3-208ENST00000469585 RIMBP3Q9UFD9 1639 aa10.02□□□□□ -0.81
PTCD3-208ENST00000469585 CARMIL2Q6F5E8 1435 aa10.01□□□□□ -0.81
PTCD3-208ENST00000469585 TMEM229AB2RXF0 380 aa10.01□□□□□ -0.81
PTCD3-208ENST00000469585 AVPP01185 164 aa10.01□□□□□ -0.81
PTCD3-208ENST00000469585 SCNN1DP51172 638 aa10.01□□□□□ -0.81
PTCD3-208ENST00000469585 PSME1Q06323 249 aa10.01□□□□□ -0.81
PTCD3-208ENST00000469585 FAM200AQ8TCP9 573 aa10.01□□□□□ -0.81
PTCD3-208ENST00000469585 CEP170Q5SW79 1584 aa10.01□□□□□ -0.81
PTCD3-208ENST00000469585 WASLO00401 505 aaPredicted RBP10□□□□□ -0.81
PTCD3-208ENST00000469585 STAU1O95793 577 aaKnown RBP10□□□□□ -0.81
PTCD3-208ENST00000469585 GNRH1P01148 92 aa10□□□□□ -0.81
PTCD3-208ENST00000469585 FAM69CQ0P6D2 419 aa10□□□□□ -0.81
PTCD3-208ENST00000469585 KIAA0586Q9BVV6 1533 aa10□□□□□ -0.81
PTCD3-208ENST00000469585 CARNS1A5YM72 827 aa9.99□□□□□ -0.81
PTCD3-208ENST00000469585 FAM187AA6NFU0 413 aa9.99□□□□□ -0.81
PTCD3-208ENST00000469585 GFRA3O60609 400 aa9.99□□□□□ -0.81
PTCD3-208ENST00000469585 SEC13P55735 322 aa9.99□□□□□ -0.81
PTCD3-208ENST00000469585 MEIOBQ8N635 442 aa9.99□□□□□ -0.81
PTCD3-208ENST00000469585 TRAIPQ9BWF2 469 aa9.99□□□□□ -0.81
PTCD3-208ENST00000469585 ETNK1Q9HBU6 452 aa9.99□□□□□ -0.81
PTCD3-208ENST00000469585 SFI1A8K8P3 1242 aa9.98□□□□□ -0.81
PTCD3-208ENST00000469585 NRG2O14511 850 aaPredicted RBP9.98□□□□□ -0.81
PTCD3-208ENST00000469585 GDF10P55107 478 aa9.98□□□□□ -0.81
PTCD3-208ENST00000469585 SERBP1Q8NC51 408 aaKnown RBP eCLIP9.98□□□□□ -0.81
PTCD3-208ENST00000469585 ZNF358Q9NW07 568 aa9.98□□□□□ -0.81
PTCD3-208ENST00000469585 PRG4Q92954 1404 aaPredicted RBP9.98□□□□□ -0.81
PTCD3-208ENST00000469585 IQGAP2Q13576 1575 aa9.97□□□□□ -0.81
PTCD3-208ENST00000469585 M0R2N6 131 aa9.97□□□□□ -0.81
PTCD3-208ENST00000469585 CAPN5O15484 640 aaPredicted RBP9.97□□□□□ -0.81
PTCD3-208ENST00000469585 INHAP05111 366 aa9.97□□□□□ -0.81
PTCD3-208ENST00000469585 PTGIRP43119 386 aa9.97□□□□□ -0.81
PTCD3-208ENST00000469585 PDE4CQ08493 712 aa9.97□□□□□ -0.81
PTCD3-208ENST00000469585 AGBL1Q96MI9 1066 aa9.97□□□□□ -0.81
PTCD3-208ENST00000469585 ARHGEF10LQ9HCE6 1279 aa9.97□□□□□ -0.81
PTCD3-208ENST00000469585 RUSC2Q8N2Y8 1516 aa9.97□□□□□ -0.81
PTCD3-208ENST00000469585 DGAT1O75907 488 aa9.96□□□□□ -0.82
PTCD3-208ENST00000469585 PDIA4P13667 645 aaKnown RBP9.96□□□□□ -0.82
PTCD3-208ENST00000469585 RBM19Q9Y4C8 960 aaKnown RBP9.96□□□□□ -0.82
PTCD3-208ENST00000469585 IL2RAP01589 272 aa9.95□□□□□ -0.82
PTCD3-208ENST00000469585 SWI5Q1ZZU3 235 aa9.95□□□□□ -0.82
PTCD3-208ENST00000469585 ESCO1Q5FWF5 840 aa9.95□□□□□ -0.82
PTCD3-208ENST00000469585 XAGE2Q96GT9 111 aa9.95□□□□□ -0.82
PTCD3-208ENST00000469585 RAB6BQ9NRW1 208 aa9.95□□□□□ -0.82
PTCD3-208ENST00000469585 SLAIN2Q9P270 581 aa9.95□□□□□ -0.82
PTCD3-208ENST00000469585 HRH3Q9Y5N1 445 aa9.95□□□□□ -0.82
PTCD3-208ENST00000469585 GOLGA3Q08378 1498 aa9.95□□□□□ -0.82
PTCD3-208ENST00000469585 A0A1W2PRU2 124 aa9.94□□□□□ -0.82
PTCD3-208ENST00000469585 SMCPP49901 116 aaPredicted RBP9.94□□□□□ -0.82
PTCD3-208ENST00000469585 CLN3Q13286 438 aa9.94□□□□□ -0.82
PTCD3-208ENST00000469585 CLP1Q92989 425 aaKnown RBP9.94□□□□□ -0.82
PTCD3-208ENST00000469585 SLC4A9Q96Q91 983 aa9.94□□□□□ -0.82
PTCD3-208ENST00000469585 SHROOM2Q13796 1616 aa9.93□□□□□ -0.82
PTCD3-208ENST00000469585 TTBK1Q5TCY1 1321 aaPredicted RBP9.93□□□□□ -0.82
PTCD3-208ENST00000469585 RELBQ01201 579 aa9.93□□□□□ -0.82
PTCD3-208ENST00000469585 LAPTM4AQ15012 233 aa9.93□□□□□ -0.82
PTCD3-208ENST00000469585 PKDCCQ504Y2 493 aa9.93□□□□□ -0.82
PTCD3-208ENST00000469585 TSEN2Q8NCE0 465 aaKnown RBP9.93□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 21 ms