RNA–Protein interactions for RNA: ENST00000468792.1

COL6A3-208, Transcript of collagen type VI alpha 3 chain, humanhuman

TSL 2

Gene COL6A3, Length 329 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A3-208ENST00000468792 EIF5BO60841 1220 aaKnown RBP9.57□□□□□ -0.88
COL6A3-208ENST00000468792 SKAP1Q86WV1 359 aa9.57□□□□□ -0.88
COL6A3-208ENST00000468792 ANKRD44Q8N8A2 993 aa9.57□□□□□ -0.88
COL6A3-208ENST00000468792 ZBTB47Q9UFB7 747 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-208ENST00000468792 AXIN2Q9Y2T1 843 aa9.57□□□□□ -0.88
COL6A3-208ENST00000468792 IBTKQ9P2D0 1353 aaPredicted RBP9.57□□□□□ -0.88
COL6A3-208ENST00000468792 HEG1Q9ULI3 1381 aa9.57□□□□□ -0.88
COL6A3-208ENST00000468792 KDM3BQ7LBC6 1761 aa9.57□□□□□ -0.88
COL6A3-208ENST00000468792 N4BP2Q86UW6 1770 aaPredicted RBP9.56□□□□□ -0.88
COL6A3-208ENST00000468792 EIF4A1P60842 406 aaKnown RBP9.56□□□□□ -0.88
COL6A3-208ENST00000468792 KRT24Q2M2I5 525 aa9.56□□□□□ -0.88
COL6A3-208ENST00000468792 CHD1LQ86WJ1 897 aa9.56□□□□□ -0.88
COL6A3-208ENST00000468792 SIRT2Q8IXJ6 389 aa9.56□□□□□ -0.88
COL6A3-208ENST00000468792 DCTPP1Q9H773 170 aa9.56□□□□□ -0.88
COL6A3-208ENST00000468792 RNMTO43148 476 aaKnown RBP9.55□□□□□ -0.88
COL6A3-208ENST00000468792 HSPA2P54652 639 aa9.55□□□□□ -0.88
COL6A3-208ENST00000468792 XPCQ01831 940 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-208ENST00000468792 C1orf141Q5JVX7 400 aa9.55□□□□□ -0.88
COL6A3-208ENST00000468792 ZNF530Q6P9A1 599 aaPredicted RBP9.55□□□□□ -0.88
COL6A3-208ENST00000468792 BRINP3Q76B58 766 aa9.55□□□□□ -0.88
COL6A3-208ENST00000468792 MIS18AQ9NYP9 233 aa9.55□□□□□ -0.88
COL6A3-208ENST00000468792 ATP10DQ9P241 1426 aa9.55□□□□□ -0.88
COL6A3-208ENST00000468792 RGPD2P0DJD1 1756 aa9.55□□□□□ -0.88
COL6A3-208ENST00000468792 TEFQ10587 303 aa9.54□□□□□ -0.88
COL6A3-208ENST00000468792 FLIIQ13045 1269 aa9.54□□□□□ -0.88
COL6A3-208ENST00000468792 BMP2KLQ5H9B9 411 aa9.54□□□□□ -0.88
COL6A3-208ENST00000468792 LMOD2Q6P5Q4 547 aa9.54□□□□□ -0.88
COL6A3-208ENST00000468792 USHBP1Q8N6Y0 703 aa9.54□□□□□ -0.88
COL6A3-208ENST00000468792 LRRC59Q96AG4 307 aaKnown RBP9.54□□□□□ -0.88
COL6A3-208ENST00000468792 SLAIN2Q9P270 581 aa9.54□□□□□ -0.88
COL6A3-208ENST00000468792 SIPA1L3O60292 1781 aaPredicted RBP9.54□□□□□ -0.88
COL6A3-208ENST00000468792 HMMRO75330 724 aa9.53□□□□□ -0.88
COL6A3-208ENST00000468792 GNAI3P08754 354 aa9.53□□□□□ -0.88
COL6A3-208ENST00000468792 CEP85Q6P2H3 762 aa9.53□□□□□ -0.88
COL6A3-208ENST00000468792 ERICH6Q7L0X2 663 aa9.53□□□□□ -0.88
COL6A3-208ENST00000468792 RAPGEF4Q8WZA2 1011 aa9.53□□□□□ -0.88
COL6A3-208ENST00000468792 UPF2Q9HAU5 1272 aaKnown RBP9.53□□□□□ -0.88
COL6A3-208ENST00000468792 LGR6Q9HBX8 967 aa9.53□□□□□ -0.88
COL6A3-208ENST00000468792 SPG7Q9UQ90 795 aa9.53□□□□□ -0.88
COL6A3-208ENST00000468792 BTBD11A6QL63 1104 aa9.52□□□□□ -0.89
COL6A3-208ENST00000468792 HSP90AB1P08238 724 aaKnown RBP9.52□□□□□ -0.89
COL6A3-208ENST00000468792 TATP17735 454 aaPredicted RBP9.52□□□□□ -0.89
COL6A3-208ENST00000468792 HDGFL1Q5TGJ6 251 aa9.52□□□□□ -0.89
COL6A3-208ENST00000468792 G2E3Q7L622 706 aa9.52□□□□□ -0.89
COL6A3-208ENST00000468792 MRC1P22897 1456 aa9.52□□□□□ -0.89
COL6A3-208ENST00000468792 PKD1L3Q7Z443 1732 aa9.51□□□□□ -0.89
COL6A3-208ENST00000468792 RGPD5Q99666 1765 aa9.51□□□□□ -0.89
COL6A3-208ENST00000468792 GNAI2P04899 355 aa9.51□□□□□ -0.89
COL6A3-208ENST00000468792 ZC3H6P61129 1189 aaKnown RBP9.51□□□□□ -0.89
COL6A3-208ENST00000468792 IFNL2Q8IZJ0 200 aa9.51□□□□□ -0.89
COL6A3-208ENST00000468792 TBC1D32Q96NH3 1257 aa9.51□□□□□ -0.89
COL6A3-208ENST00000468792 DBF4Q9UBU7 674 aaPredicted RBP9.51□□□□□ -0.89
COL6A3-208ENST00000468792 SCN11AQ9UI33 1791 aa9.5□□□□□ -0.89
COL6A3-208ENST00000468792 NHSL1Q5SYE7 1610 aa9.5□□□□□ -0.89
COL6A3-208ENST00000468792 GIGYF1O75420 1035 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-208ENST00000468792 PHKG2P15735 406 aa9.5□□□□□ -0.89
COL6A3-208ENST00000468792 FKBP5Q13451 457 aaPredicted RBP9.5□□□□□ -0.89
COL6A3-208ENST00000468792 ANKRD45Q5TZF3 282 aa9.5□□□□□ -0.89
COL6A3-208ENST00000468792 MPRIPQ6WCQ1 1025 aa9.5□□□□□ -0.89
COL6A3-208ENST00000468792 DCAF5Q96JK2 942 aa9.5□□□□□ -0.89
COL6A3-208ENST00000468792 MEIS3Q99687 375 aa9.5□□□□□ -0.89
COL6A3-208ENST00000468792 HDAC5Q9UQL6 1122 aa9.5□□□□□ -0.89
COL6A3-208ENST00000468792 PARP4Q9UKK3 1724 aaKnown RBP9.49□□□□□ -0.89
COL6A3-208ENST00000468792 ATP8B2P98198 1209 aa9.49□□□□□ -0.89
COL6A3-208ENST00000468792 NPM2Q86SE8 214 aaKnown RBP9.49□□□□□ -0.89
COL6A3-208ENST00000468792 LNPKQ9C0E8 428 aa9.49□□□□□ -0.89
COL6A3-208ENST00000468792 OSBPL3Q9H4L5 887 aa9.49□□□□□ -0.89
COL6A3-208ENST00000468792 C1orf115Q9H7X2 142 aa9.49□□□□□ -0.89
COL6A3-208ENST00000468792 SLC52A2Q9HAB3 445 aa9.49□□□□□ -0.89
COL6A3-208ENST00000468792 NLRP2Q9NX02 1062 aa9.49□□□□□ -0.89
COL6A3-208ENST00000468792 WDR17Q8IZU2 1322 aa9.49□□□□□ -0.89
COL6A3-208ENST00000468792 ZNF335Q9H4Z2 1342 aaPredicted RBP9.49□□□□□ -0.89
COL6A3-208ENST00000468792 MEGF6O75095 1541 aa9.48□□□□□ -0.89
COL6A3-208ENST00000468792 ZBTB7CA1YPR0 619 aa9.48□□□□□ -0.89
COL6A3-208ENST00000468792 SEC24BO95487 1268 aa9.48□□□□□ -0.89
COL6A3-208ENST00000468792 NKX1-1Q15270 411 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-208ENST00000468792 DDX17Q92841 729 aaKnown RBP9.48□□□□□ -0.89
COL6A3-208ENST00000468792 HYPKQ9NX55 129 aa9.48□□□□□ -0.89
COL6A3-208ENST00000468792 KDM6AO15550 1401 aaPredicted RBP9.48□□□□□ -0.89
COL6A3-208ENST00000468792 F6X3S4 739 aa9.47□□□□□ -0.89
COL6A3-208ENST00000468792 ALDH1L1O75891 902 aa9.47□□□□□ -0.89
COL6A3-208ENST00000468792 RBM25P49756 843 aaKnown RBP9.47□□□□□ -0.89
COL6A3-208ENST00000468792 BECN1Q14457 450 aa9.47□□□□□ -0.89
COL6A3-208ENST00000468792 ZNF790Q6PG37 636 aa9.47□□□□□ -0.89
COL6A3-208ENST00000468792 PLEKHM2Q8IWE5 1019 aa9.47□□□□□ -0.89
COL6A3-208ENST00000468792 CARD10Q9BWT7 1032 aa9.47□□□□□ -0.89
COL6A3-208ENST00000468792 SRCIN1Q9C0H9 1055 aa9.47□□□□□ -0.89
COL6A3-208ENST00000468792 USP44Q9H0E7 712 aa9.47□□□□□ -0.89
COL6A3-208ENST00000468792 DDX21Q9NR30 783 aaKnown RBP eCLIP9.47□□□□□ -0.89
COL6A3-208ENST00000468792 COL5A2P05997 1499 aaPredicted RBP9.47□□□□□ -0.89
COL6A3-208ENST00000468792 ERVV-2B6SEH9 535 aa9.46□□□□□ -0.9
COL6A3-208ENST00000468792 CSB-PGBD3P0DP91 1061 aa9.46□□□□□ -0.9
COL6A3-208ENST00000468792 MTX1Q13505 466 aa9.46□□□□□ -0.9
COL6A3-208ENST00000468792 BEND3Q5T5X7 828 aa9.46□□□□□ -0.9
COL6A3-208ENST00000468792 SLC4A10Q6U841 1118 aa9.46□□□□□ -0.9
COL6A3-208ENST00000468792 SSH3Q8TE77 659 aa9.46□□□□□ -0.9
COL6A3-208ENST00000468792 DNAAF4Q8WXU2 420 aa9.46□□□□□ -0.9
COL6A3-208ENST00000468792 CHPF2Q9P2E5 772 aa9.46□□□□□ -0.9
COL6A3-208ENST00000468792 USP35Q9P2H5 1018 aa9.46□□□□□ -0.9
COL6A3-208ENST00000468792 ABCA3Q99758 1704 aa9.45□□□□□ -0.9
Retrieved 100 of 20,778 RNA–protein pairs in 15.5 ms