RNA–Protein interactions for RNA: ENST00000466781.5

HPS4-209, Transcript of HPS4, biogenesis of lysosomal organelles complex 3 subunit 2, humanhuman

TSL 1 (best)

Gene HPS4, Length 6,136 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HPS4-209ENST00000466781 GNAT3A8MTJ3 354 aa10.27□□□□□ -0.77
HPS4-209ENST00000466781 SCLT1Q96NL6 688 aa10.27□□□□□ -0.77
HPS4-209ENST00000466781 UBAC1Q9BSL1 405 aa10.27□□□□□ -0.77
HPS4-209ENST00000466781 EZRP15311 586 aaKnown RBP10.27□□□□□ -0.77
HPS4-209ENST00000466781 PAXIP1Q6ZW49 1069 aaPredicted RBP10.27□□□□□ -0.77
HPS4-209ENST00000466781 FAM43AQ8N2R8 423 aa10.27□□□□□ -0.77
HPS4-209ENST00000466781 TRAPPC8Q9Y2L5 1435 aa10.27□□□□□ -0.77
HPS4-209ENST00000466781 CHD1O14646 1710 aa10.27□□□□□ -0.77
HPS4-209ENST00000466781 SPDYE4A6NLX3 237 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 NASPP49321 788 aaPredicted RBP10.26□□□□□ -0.77
HPS4-209ENST00000466781 FKBP4Q02790 459 aaKnown RBP eCLIP10.26□□□□□ -0.77
HPS4-209ENST00000466781 NEK4P51957 841 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 DHX8Q14562 1220 aaKnown RBP10.26□□□□□ -0.77
HPS4-209ENST00000466781 PPP4R3AQ6IN85 833 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 TSPYL1Q9H0U9 437 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 MBD3O95983 291 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 RABEP1Q15276 862 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 GCC1Q96CN9 775 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 MIS18AQ9NYP9 233 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 ZNF652Q9Y2D9 606 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 MAP4K4O95819 1239 aaPredicted RBP10.26□□□□□ -0.77
HPS4-209ENST00000466781 POTEJP0CG39 1038 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 USP5P45974 858 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 LRRCC1Q9C099 1032 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 RNF214Q8ND24 703 aa10.26□□□□□ -0.77
HPS4-209ENST00000466781 SLC4A2P04920 1241 aa10.25□□□□□ -0.77
HPS4-209ENST00000466781 ZMYM3Q14202 1370 aa10.25□□□□□ -0.77
HPS4-209ENST00000466781 CT47B1P0C2W7 299 aaPredicted RBP10.25□□□□□ -0.77
HPS4-209ENST00000466781 CFAP43Q8NDM7 1665 aa10.25□□□□□ -0.77
HPS4-209ENST00000466781 SRCIN1Q9C0H9 1055 aa10.25□□□□□ -0.77
HPS4-209ENST00000466781 ZFYVE16Q7Z3T8 1539 aa10.25□□□□□ -0.77
HPS4-209ENST00000466781 CBFA2T2O43439 604 aa10.25□□□□□ -0.77
HPS4-209ENST00000466781 AMOTQ4VCS5 1084 aa10.25□□□□□ -0.77
HPS4-209ENST00000466781 LRP2BPQ9P2M1 347 aa10.25□□□□□ -0.77
HPS4-209ENST00000466781 FIBPO43427 364 aa10.25□□□□□ -0.77
HPS4-209ENST00000466781 TMEM87AQ8NBN3 555 aa10.25□□□□□ -0.77
HPS4-209ENST00000466781 C8orf37Q96NL8 207 aa10.25□□□□□ -0.77
HPS4-209ENST00000466781 TTLL12Q14166 644 aaPredicted RBP10.24□□□□□ -0.77
HPS4-209ENST00000466781 JAKMIP3Q5VZ66 844 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 SSR1P43307 286 aaKnown RBP10.24□□□□□ -0.77
HPS4-209ENST00000466781 ME1P48163 572 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 CHMP4BP1P59074 171 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 SPINK5Q9NQ38 1064 aaPredicted RBP10.24□□□□□ -0.77
HPS4-209ENST00000466781 CAVIN1Q6NZI2 390 aaKnown RBP10.24□□□□□ -0.77
HPS4-209ENST00000466781 LEKR1Q6ZMV7 388 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 NME9Q86XW9 330 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 WASF1Q92558 559 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 CEP57L1Q8IYX8 460 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 C14orf93Q9H972 538 aaKnown RBP10.24□□□□□ -0.77
HPS4-209ENST00000466781 ZNF287Q9HBT7 754 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 CTNNA3Q9UI47 895 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 NPHP3Q7Z494 1330 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 AACSQ86V21 672 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 CRACR2BQ8N4Y2 399 aaPredicted RBP10.24□□□□□ -0.77
HPS4-209ENST00000466781 PLCD4Q9BRC7 762 aa10.24□□□□□ -0.77
HPS4-209ENST00000466781 SCAF11Q99590 1463 aaKnown RBP10.23□□□□□ -0.77
HPS4-209ENST00000466781 TSPOAP1O95153 1857 aa10.23□□□□□ -0.77
HPS4-209ENST00000466781 BCAR3O75815 825 aa10.23□□□□□ -0.77
HPS4-209ENST00000466781 SEC63Q9UGP8 760 aaKnown RBP10.23□□□□□ -0.77
HPS4-209ENST00000466781 TNMDQ9H2S6 317 aa10.23□□□□□ -0.77
HPS4-209ENST00000466781 IQCEQ6IPM2 695 aa10.23□□□□□ -0.77
HPS4-209ENST00000466781 TAX1BP1Q86VP1 789 aa10.23□□□□□ -0.77
HPS4-209ENST00000466781 GOLGA6L7A0A1B0GV03 622 aa10.22□□□□□ -0.77
HPS4-209ENST00000466781 PRPF40AO75400 957 aaKnown RBP10.22□□□□□ -0.77
HPS4-209ENST00000466781 MPRIPQ6WCQ1 1025 aa10.22□□□□□ -0.77
HPS4-209ENST00000466781 PIBF1Q8WXW3 757 aa10.22□□□□□ -0.77
HPS4-209ENST00000466781 PPP1R12BO60237 982 aaPredicted RBP10.22□□□□□ -0.77
HPS4-209ENST00000466781 MRE11P49959 708 aa10.22□□□□□ -0.77
HPS4-209ENST00000466781 CCDC112Q8NEF3 446 aa10.22□□□□□ -0.77
HPS4-209ENST00000466781 CEP131Q9UPN4 1083 aa10.22□□□□□ -0.77
HPS4-209ENST00000466781 POLR3DP05423 398 aaPredicted RBP10.22□□□□□ -0.77
HPS4-209ENST00000466781 CCDC85AQ96PX6 553 aaPredicted RBP10.22□□□□□ -0.77
HPS4-209ENST00000466781 CEP126Q9P2H0 1117 aa10.22□□□□□ -0.77
HPS4-209ENST00000466781 FCHSD2O94868 740 aa10.21□□□□□ -0.77
HPS4-209ENST00000466781 SPC24Q8NBT2 197 aa10.21□□□□□ -0.77
HPS4-209ENST00000466781 TARBP1Q13395 1621 aaKnown RBP10.21□□□□□ -0.77
HPS4-209ENST00000466781 CCDC192P0DO97 292 aa10.21□□□□□ -0.77
HPS4-209ENST00000466781 AIDAQ96BJ3 306 aa10.21□□□□□ -0.77
HPS4-209ENST00000466781 DISP1Q96F81 1524 aa10.21□□□□□ -0.77
HPS4-209ENST00000466781 ATP7AQ04656 1500 aa10.21□□□□□ -0.78
HPS4-209ENST00000466781 MYCNP04198 464 aaPredicted RBP10.21□□□□□ -0.78
HPS4-209ENST00000466781 CAVIN4Q5BKX8 364 aa10.21□□□□□ -0.78
HPS4-209ENST00000466781 ACEP12821 1306 aa10.21□□□□□ -0.78
HPS4-209ENST00000466781 CETN2P41208 172 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 MCM10Q7L590 875 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 TAF4BQ92750 862 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 KIAA0754O94854 1291 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 ANAPC15P60006 121 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 CENPHQ9H3R5 247 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 EHMT1Q9H9B1 1298 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 PDZRN3Q9UPQ7 1066 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 IMMTQ16891 758 aaKnown RBP10.2□□□□□ -0.78
HPS4-209ENST00000466781 IDH1O75874 414 aaKnown RBP10.2□□□□□ -0.78
HPS4-209ENST00000466781 KRT85P78386 507 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 CCDC150Q8NCX0 1101 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 CUL5Q93034 780 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 PDRG1Q9NUG6 133 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 METTL24Q5JXM2 366 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 ANKRD24Q8TF21 1146 aa10.2□□□□□ -0.78
HPS4-209ENST00000466781 ANKIB1Q9P2G1 1089 aa10.2□□□□□ -0.78
Retrieved 100 of 20,778 RNA–protein pairs in 10.6 ms