RNA–Protein interactions for RNA: ENST00000457035.5

ATG4A-206, Transcript of autophagy related 4A cysteine peptidase, humanhuman

TSL 3

Gene ATG4A, Length 939 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATG4A-206ENST00000457035 SPDYE1Q8NFV5 336 aaPredicted RBP13.39□□□□□ -0.27
ATG4A-206ENST00000457035 NHSQ6T4R5 1651 aa13.39□□□□□ -0.27
ATG4A-206ENST00000457035 RGPD3A6NKT7 1758 aaPredicted RBP13.39□□□□□ -0.27
ATG4A-206ENST00000457035 RGPD4Q7Z3J3 1758 aa13.39□□□□□ -0.27
ATG4A-206ENST00000457035 BTAF1O14981 1849 aa13.39□□□□□ -0.27
ATG4A-206ENST00000457035 DOT1LQ8TEK3 1739 aa13.39□□□□□ -0.27
ATG4A-206ENST00000457035 PLSCR1O15162 318 aa13.38□□□□□ -0.27
ATG4A-206ENST00000457035 HSP90AB1P08238 724 aaKnown RBP13.38□□□□□ -0.27
ATG4A-206ENST00000457035 AKAP4Q5JQC9 854 aa13.38□□□□□ -0.27
ATG4A-206ENST00000457035 DCAF5Q96JK2 942 aa13.38□□□□□ -0.27
ATG4A-206ENST00000457035 ADAMTS8Q9UP79 889 aa13.38□□□□□ -0.27
ATG4A-206ENST00000457035 TOGARAM1Q9Y4F4 1720 aa13.38□□□□□ -0.27
ATG4A-206ENST00000457035 SCN11AQ9UI33 1791 aa13.37□□□□□ -0.27
ATG4A-206ENST00000457035 C1orf141Q5JVX7 400 aa13.37□□□□□ -0.27
ATG4A-206ENST00000457035 MPRIPQ6WCQ1 1025 aa13.37□□□□□ -0.27
ATG4A-206ENST00000457035 GAS2L2Q8NHY3 880 aa13.37□□□□□ -0.27
ATG4A-206ENST00000457035 DLG5Q8TDM6 1919 aa13.37□□□□□ -0.27
ATG4A-206ENST00000457035 SPDYE4A6NLX3 237 aa13.36□□□□□ -0.27
ATG4A-206ENST00000457035 ERVV-2B6SEH9 535 aa13.36□□□□□ -0.27
ATG4A-206ENST00000457035 PROM2Q8N271 834 aa13.36□□□□□ -0.27
ATG4A-206ENST00000457035 PNISRQ8TF01 805 aaKnown RBP13.36□□□□□ -0.27
ATG4A-206ENST00000457035 PIGBQ92521 554 aa13.36□□□□□ -0.27
ATG4A-206ENST00000457035 SYTL4Q96C24 671 aaPredicted RBP13.36□□□□□ -0.27
ATG4A-206ENST00000457035 PNNQ9H307 717 aaKnown RBP13.36□□□□□ -0.27
ATG4A-206ENST00000457035 LGR6Q9HBX8 967 aa13.36□□□□□ -0.27
ATG4A-206ENST00000457035 WDR43Q15061 677 aaKnown RBP eCLIP13.35□□□□□ -0.27
ATG4A-206ENST00000457035 DIEXFQ68CQ4 756 aaKnown RBP13.35□□□□□ -0.27
ATG4A-206ENST00000457035 KDM6AO15550 1401 aaPredicted RBP13.35□□□□□ -0.27
ATG4A-206ENST00000457035 GNAT3A8MTJ3 354 aa13.34□□□□□ -0.27
ATG4A-206ENST00000457035 RNMTO43148 476 aaKnown RBP13.34□□□□□ -0.27
ATG4A-206ENST00000457035 NBPF14Q5TI25 921 aa13.34□□□□□ -0.27
ATG4A-206ENST00000457035 IL17REQ8NFR9 667 aa13.34□□□□□ -0.27
ATG4A-206ENST00000457035 MRS2Q9HD23 443 aa13.34□□□□□ -0.27
ATG4A-206ENST00000457035 NFATC2IPQ8NCF5 419 aa13.33□□□□□ -0.28
ATG4A-206ENST00000457035 ADAMTS7Q9UKP4 1686 aa13.33□□□□□ -0.28
ATG4A-206ENST00000457035 NEFMP07197 916 aa13.32□□□□□ -0.28
ATG4A-206ENST00000457035 FXR2P51116 673 aaKnown RBP eCLIP13.32□□□□□ -0.28
ATG4A-206ENST00000457035 PIP4P2Q8N4L2 257 aa13.32□□□□□ -0.28
ATG4A-206ENST00000457035 RUNDC1Q96C34 613 aa13.32□□□□□ -0.28
ATG4A-206ENST00000457035 TMOD3Q9NYL9 352 aa13.32□□□□□ -0.28
ATG4A-206ENST00000457035 CASZ1Q86V15 1759 aa13.32□□□□□ -0.28
ATG4A-206ENST00000457035 MAP3K5Q99683 1374 aa13.32□□□□□ -0.28
ATG4A-206ENST00000457035 HTATSF1O43719 755 aaKnown RBP13.31□□□□□ -0.28
ATG4A-206ENST00000457035 CABP4P57796 275 aa13.31□□□□□ -0.28
ATG4A-206ENST00000457035 NFE2L2Q16236 605 aa13.31□□□□□ -0.28
ATG4A-206ENST00000457035 CCDC146Q8IYE0 955 aa13.31□□□□□ -0.28
ATG4A-206ENST00000457035 CLEC11AQ9Y240 323 aa13.31□□□□□ -0.28
ATG4A-206ENST00000457035 LY75O60449 1722 aa13.3□□□□□ -0.28
ATG4A-206ENST00000457035 TMPOP42166 694 aaKnown RBP13.3□□□□□ -0.28
ATG4A-206ENST00000457035 TXNRD1Q16881 649 aa13.3□□□□□ -0.28
ATG4A-206ENST00000457035 SLC52A2Q9HAB3 445 aa13.3□□□□□ -0.28
ATG4A-206ENST00000457035 ATG3Q9NT62 314 aa13.3□□□□□ -0.28
ATG4A-206ENST00000457035 ASAP1Q9ULH1 1129 aa13.3□□□□□ -0.28
ATG4A-206ENST00000457035 MAPK8IP3Q9UPT6 1336 aa13.3□□□□□ -0.28
ATG4A-206ENST00000457035 CEMIPQ8WUJ3 1361 aa13.3□□□□□ -0.28
ATG4A-206ENST00000457035 SMARCC1Q92922 1105 aaPredicted RBP13.29□□□□□ -0.28
ATG4A-206ENST00000457035 LRRC4BQ9NT99 713 aa13.29□□□□□ -0.28
ATG4A-206ENST00000457035 SIPA1L3O60292 1781 aaPredicted RBP13.28□□□□□ -0.28
ATG4A-206ENST00000457035 CCER2I3L3R5 266 aa13.28□□□□□ -0.28
ATG4A-206ENST00000457035 RIPK4P57078 832 aa13.28□□□□□ -0.28
ATG4A-206ENST00000457035 DCTN1Q14203 1278 aa13.28□□□□□ -0.28
ATG4A-206ENST00000457035 MCM10Q7L590 875 aa13.28□□□□□ -0.28
ATG4A-206ENST00000457035 MIER1Q8N108 512 aa13.28□□□□□ -0.28
ATG4A-206ENST00000457035 RTF1Q92541 710 aaKnown RBP13.28□□□□□ -0.28
ATG4A-206ENST00000457035 PPP1R1BQ9UD71 204 aaPredicted RBP13.28□□□□□ -0.28
ATG4A-206ENST00000457035 SLC27A3Q5K4L6 730 aa13.27□□□□□ -0.29
ATG4A-206ENST00000457035 PALLDQ8WX93 1383 aa13.27□□□□□ -0.29
ATG4A-206ENST00000457035 MRC1P22897 1456 aa13.27□□□□□ -0.29
ATG4A-206ENST00000457035 APAF1O14727 1248 aa13.26□□□□□ -0.29
ATG4A-206ENST00000457035 KCNQ4P56696 695 aa13.26□□□□□ -0.29
ATG4A-206ENST00000457035 TEFQ10587 303 aa13.26□□□□□ -0.29
ATG4A-206ENST00000457035 SPON1Q9HCB6 807 aa13.26□□□□□ -0.29
ATG4A-206ENST00000457035 RRP7AQ9Y3A4 280 aaKnown RBP13.26□□□□□ -0.29
ATG4A-206ENST00000457035 TAF1LQ8IZX4 1826 aa13.25□□□□□ -0.29
ATG4A-206ENST00000457035 LOC102724428A0A0B4J2F2 783 aa13.25□□□□□ -0.29
ATG4A-206ENST00000457035 SIK1P57059 783 aa13.25□□□□□ -0.29
ATG4A-206ENST00000457035 SLC39A6Q13433 755 aa13.25□□□□□ -0.29
ATG4A-206ENST00000457035 NEUROD2Q15784 382 aa13.25□□□□□ -0.29
ATG4A-206ENST00000457035 FAM9BQ8IZU0 186 aa13.25□□□□□ -0.29
ATG4A-206ENST00000457035 SLC4A9Q96Q91 983 aa13.25□□□□□ -0.29
ATG4A-206ENST00000457035 ANO8Q9HCE9 1232 aaPredicted RBP13.25□□□□□ -0.29
ATG4A-206ENST00000457035 CCNL1Q9UK58 526 aaPredicted RBP13.25□□□□□ -0.29
ATG4A-206ENST00000457035 TRIM35Q9UPQ4 493 aa13.25□□□□□ -0.29
ATG4A-206ENST00000457035 TAF7Q15545 349 aaPredicted RBP13.24□□□□□ -0.29
ATG4A-206ENST00000457035 THUMPD2Q9BTF0 503 aaKnown RBP13.24□□□□□ -0.29
ATG4A-206ENST00000457035 MYH14Q7Z406 1995 aaKnown RBP13.22□□□□□ -0.29
ATG4A-206ENST00000457035 BTBD11A6QL63 1104 aa13.22□□□□□ -0.29
ATG4A-206ENST00000457035 KCNQ3O43525 872 aa13.22□□□□□ -0.29
ATG4A-206ENST00000457035 PTCD1O75127 700 aaKnown RBP13.22□□□□□ -0.29
ATG4A-206ENST00000457035 ATP6V1AP38606 617 aa13.22□□□□□ -0.29
ATG4A-206ENST00000457035 ZNF790Q6PG37 636 aa13.22□□□□□ -0.29
ATG4A-206ENST00000457035 PDGFDQ9GZP0 370 aaPredicted RBP13.22□□□□□ -0.29
ATG4A-206ENST00000457035 ZNF831Q5JPB2 1677 aa13.21□□□□□ -0.29
ATG4A-206ENST00000457035 PAPPAQ13219 1627 aa13.21□□□□□ -0.29
ATG4A-206ENST00000457035 LMOD3Q0VAK6 560 aa13.21□□□□□ -0.29
ATG4A-206ENST00000457035 ITPK1Q13572 414 aa13.21□□□□□ -0.29
ATG4A-206ENST00000457035 SLC15A2Q16348 729 aa13.21□□□□□ -0.29
ATG4A-206ENST00000457035 MIS18AQ9NYP9 233 aa13.21□□□□□ -0.29
ATG4A-206ENST00000457035 UBR2Q8IWV8 1755 aa13.21□□□□□ -0.29
ATG4A-206ENST00000457035 ZBTB7AO95365 584 aa13.2□□□□□ -0.3
Retrieved 100 of 20,778 RNA–protein pairs in 12.1 ms