RNA–Protein interactions for RNA: ENST00000451053.2

VPS33A-202, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3 BASIC

Gene VPS33A, Length 1,154 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-202ENST00000451053 SF3B2Q13435 895 aaKnown RBP17.12■□□□□ 0.33
VPS33A-202ENST00000451053 CCDC125Q86Z20 511 aa17.12■□□□□ 0.33
VPS33A-202ENST00000451053 EP400Q96L91 3159 aa17.11■□□□□ 0.33
VPS33A-202ENST00000451053 SALL2Q9Y467 1007 aaPredicted RBP17.11■□□□□ 0.33
VPS33A-202ENST00000451053 DEFB132Q7Z7B7 95 aa17.1■□□□□ 0.33
VPS33A-202ENST00000451053 ASAP1Q9ULH1 1129 aa17.1■□□□□ 0.33
VPS33A-202ENST00000451053 PAPPAQ13219 1627 aa17.1■□□□□ 0.33
VPS33A-202ENST00000451053 ATG3Q9NT62 314 aa17.09■□□□□ 0.33
VPS33A-202ENST00000451053 PALLDQ8WX93 1383 aa17.08■□□□□ 0.32
VPS33A-202ENST00000451053 SOCS7O14512 581 aa17.08■□□□□ 0.32
VPS33A-202ENST00000451053 BAG6P46379 1132 aa17.08■□□□□ 0.32
VPS33A-202ENST00000451053 EN1Q05925 392 aaPredicted RBP17.08■□□□□ 0.32
VPS33A-202ENST00000451053 SLC39A6Q13433 755 aa17.08■□□□□ 0.32
VPS33A-202ENST00000451053 CCDC27Q2M243 656 aa17.08■□□□□ 0.32
VPS33A-202ENST00000451053 RGPD3A6NKT7 1758 aaPredicted RBP17.07■□□□□ 0.32
VPS33A-202ENST00000451053 RGPD4Q7Z3J3 1758 aa17.07■□□□□ 0.32
VPS33A-202ENST00000451053 TAF7Q15545 349 aaPredicted RBP17.07■□□□□ 0.32
VPS33A-202ENST00000451053 NCBP3Q53F19 620 aaKnown RBP17.07■□□□□ 0.32
VPS33A-202ENST00000451053 WWC1Q8IX03 1113 aa17.07■□□□□ 0.32
VPS33A-202ENST00000451053 LY75O60449 1722 aa17.07■□□□□ 0.32
VPS33A-202ENST00000451053 BTBD11A6QL63 1104 aa17.06■□□□□ 0.32
VPS33A-202ENST00000451053 PLSCR1O15162 318 aa17.06■□□□□ 0.32
VPS33A-202ENST00000451053 EZH2Q15910 746 aaKnown RBP17.06■□□□□ 0.32
VPS33A-202ENST00000451053 SMARCC1Q92922 1105 aaPredicted RBP17.06■□□□□ 0.32
VPS33A-202ENST00000451053 CAMKK2Q96RR4 588 aa17.06■□□□□ 0.32
VPS33A-202ENST00000451053 MIS18AQ9NYP9 233 aa17.06■□□□□ 0.32
VPS33A-202ENST00000451053 KCNQ3O43525 872 aa17.05■□□□□ 0.32
VPS33A-202ENST00000451053 YTHDC1Q96MU7 727 aaKnown RBP17.05■□□□□ 0.32
VPS33A-202ENST00000451053 KCPQ6ZWJ8 1503 aa17.05■□□□□ 0.32
VPS33A-202ENST00000451053 PROM2Q8N271 834 aa17.04■□□□□ 0.32
VPS33A-202ENST00000451053 NGEFQ8N5V2 710 aa17.04■□□□□ 0.32
VPS33A-202ENST00000451053 KDM3BQ7LBC6 1761 aa17.04■□□□□ 0.32
VPS33A-202ENST00000451053 UBR2Q8IWV8 1755 aa17.04■□□□□ 0.32
VPS33A-202ENST00000451053 RREB1Q92766 1687 aa17.04■□□□□ 0.32
VPS33A-202ENST00000451053 PTCD1O75127 700 aaKnown RBP17.03■□□□□ 0.32
VPS33A-202ENST00000451053 KCNQ4P56696 695 aa17.03■□□□□ 0.32
VPS33A-202ENST00000451053 TXNRD1Q16881 649 aa17.03■□□□□ 0.32
VPS33A-202ENST00000451053 ZNF790Q6PG37 636 aa17.03■□□□□ 0.32
VPS33A-202ENST00000451053 RBM42Q9BTD8 480 aaKnown RBP17.03■□□□□ 0.32
VPS33A-202ENST00000451053 LAS1LQ9Y4W2 734 aaKnown RBP17.03■□□□□ 0.32
VPS33A-202ENST00000451053 ZNF521Q96K83 1311 aa17.02■□□□□ 0.32
VPS33A-202ENST00000451053 TTC5Q8N0Z6 440 aa17.02■□□□□ 0.32
VPS33A-202ENST00000451053 SLC4A9Q96Q91 983 aa17.02■□□□□ 0.32
VPS33A-202ENST00000451053 LOC102724428A0A0B4J2F2 783 aa17.01■□□□□ 0.31
VPS33A-202ENST00000451053 CHL1O00533 1208 aa17.01■□□□□ 0.31
VPS33A-202ENST00000451053 SIK1P57059 783 aa17.01■□□□□ 0.31
VPS33A-202ENST00000451053 HNRNPUQ00839 825 aaKnown RBP eCLIP17.01■□□□□ 0.31
VPS33A-202ENST00000451053 CALD1Q05682 793 aaKnown RBP17.01■□□□□ 0.31
VPS33A-202ENST00000451053 ZNF496Q96IT1 587 aaPredicted RBP17.01■□□□□ 0.31
VPS33A-202ENST00000451053 LRRC4BQ9NT99 713 aa17.01■□□□□ 0.31
VPS33A-202ENST00000451053 TSPYL4Q9UJ04 414 aa17.01■□□□□ 0.31
VPS33A-202ENST00000451053 CCNL1Q9UK58 526 aaPredicted RBP17.01■□□□□ 0.31
VPS33A-202ENST00000451053 ZNF853P0CG23 659 aa17■□□□□ 0.31
VPS33A-202ENST00000451053 NUP188Q5SRE5 1749 aa17■□□□□ 0.31
VPS33A-202ENST00000451053 WDR63Q8IWG1 891 aa17■□□□□ 0.31
VPS33A-202ENST00000451053 CFAP44Q96MT7 982 aa17■□□□□ 0.31
VPS33A-202ENST00000451053 IFT57Q9NWB7 429 aa17■□□□□ 0.31
VPS33A-202ENST00000451053 TJP1Q07157 1748 aa16.99■□□□□ 0.31
VPS33A-202ENST00000451053 GNAI1P63096 354 aa16.99■□□□□ 0.31
VPS33A-202ENST00000451053 ITPK1Q13572 414 aa16.99■□□□□ 0.31
VPS33A-202ENST00000451053 SLC27A3Q5K4L6 730 aa16.99■□□□□ 0.31
VPS33A-202ENST00000451053 MBIPQ9NS73 344 aa16.99■□□□□ 0.31
VPS33A-202ENST00000451053 BABAM1Q9NWV8 329 aa16.99■□□□□ 0.31
VPS33A-202ENST00000451053 IL16Q14005 1332 aa16.98■□□□□ 0.31
VPS33A-202ENST00000451053 ZNF831Q5JPB2 1677 aa16.98■□□□□ 0.31
VPS33A-202ENST00000451053 ATP6V1AP38606 617 aa16.98■□□□□ 0.31
VPS33A-202ENST00000451053 FMNL2Q96PY5 1086 aa16.98■□□□□ 0.31
VPS33A-202ENST00000451053 SPINK5Q9NQ38 1064 aaPredicted RBP16.98■□□□□ 0.31
VPS33A-202ENST00000451053 CICQ96RK0 1608 aaPredicted RBP16.98■□□□□ 0.31
VPS33A-202ENST00000451053 HEG1Q9ULI3 1381 aa16.98■□□□□ 0.31
VPS33A-202ENST00000451053 C5P01031 1676 aa16.97■□□□□ 0.31
VPS33A-202ENST00000451053 EIF4A1P60842 406 aaKnown RBP16.97■□□□□ 0.31
VPS33A-202ENST00000451053 TSR2Q969E8 191 aaKnown RBP16.97■□□□□ 0.31
VPS33A-202ENST00000451053 TAF1LQ8IZX4 1826 aa16.97■□□□□ 0.31
VPS33A-202ENST00000451053 DNAJC10Q8IXB1 793 aa16.96■□□□□ 0.31
VPS33A-202ENST00000451053 LINC00116Q8NCU8 138 aa16.96■□□□□ 0.31
VPS33A-202ENST00000451053 ZBED9Q6R2W3 1325 aa16.96■□□□□ 0.3
VPS33A-202ENST00000451053 PRAMEF22A3QJZ6 481 aa16.95■□□□□ 0.3
VPS33A-202ENST00000451053 KRT24Q2M2I5 525 aa16.95■□□□□ 0.3
VPS33A-202ENST00000451053 VSIG10Q8N0Z9 540 aa16.95■□□□□ 0.3
VPS33A-202ENST00000451053 COL5A3P25940 1745 aaPredicted RBP16.95■□□□□ 0.3
VPS33A-202ENST00000451053 GOLGA2Q08379 1002 aa16.94■□□□□ 0.3
VPS33A-202ENST00000451053 ANO8Q9HCE9 1232 aaPredicted RBP16.94■□□□□ 0.3
VPS33A-202ENST00000451053 FANCIQ9NVI1 1328 aa16.94■□□□□ 0.3
VPS33A-202ENST00000451053 C4BP0C0L5 1744 aa16.93■□□□□ 0.3
VPS33A-202ENST00000451053 SNRPA1P09661 255 aaKnown RBP16.93■□□□□ 0.3
VPS33A-202ENST00000451053 CDCA7LQ96GN5 454 aa16.93■□□□□ 0.3
VPS33A-202ENST00000451053 GIGYF1O75420 1035 aaPredicted RBP16.92■□□□□ 0.3
VPS33A-202ENST00000451053 CENPBP07199 599 aaPredicted RBP16.92■□□□□ 0.3
VPS33A-202ENST00000451053 ZNF827Q17R98 1081 aa16.92■□□□□ 0.3
VPS33A-202ENST00000451053 CYP19A1P11511 503 aaPredicted RBP16.91■□□□□ 0.3
VPS33A-202ENST00000451053 SLFN5Q08AF3 891 aa16.91■□□□□ 0.3
VPS33A-202ENST00000451053 AKT1S1Q96B36 256 aa16.91■□□□□ 0.3
VPS33A-202ENST00000451053 MYH16Q9H6N6 1097 aa16.91■□□□□ 0.3
VPS33A-202ENST00000451053 USP16Q9Y5T5 823 aa16.91■□□□□ 0.3
VPS33A-202ENST00000451053 LAMB4A4D0S4 1761 aa16.91■□□□□ 0.3
VPS33A-202ENST00000451053 E9PSI1 815 aa16.9■□□□□ 0.3
VPS33A-202ENST00000451053 CRKLP46109 303 aaKnown RBP16.9■□□□□ 0.3
VPS33A-202ENST00000451053 C8orf58Q8NAV2 365 aa16.9■□□□□ 0.3
VPS33A-202ENST00000451053 CNTNAP4Q9C0A0 1308 aa16.9■□□□□ 0.3
Retrieved 100 of 20,778 RNA–protein pairs in 25.2 ms