RNA–Protein interactions for RNA: ENST00000447376.1

SF3A1-204, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 5

Gene SF3A1, Length 418 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-204ENST00000447376 RBM42Q9BTD8 480 aaKnown RBP21.74■■□□□ 1.07
SF3A1-204ENST00000447376 SLC52A2Q9HAB3 445 aa21.74■■□□□ 1.07
SF3A1-204ENST00000447376 ATG3Q9NT62 314 aa21.74■■□□□ 1.07
SF3A1-204ENST00000447376 ATP6V1AP38606 617 aa21.73■■□□□ 1.07
SF3A1-204ENST00000447376 ZNF827Q17R98 1081 aa21.73■■□□□ 1.07
SF3A1-204ENST00000447376 AKT1S1Q96B36 256 aa21.73■■□□□ 1.07
SF3A1-204ENST00000447376 AK7Q96M32 723 aa21.73■■□□□ 1.07
SF3A1-204ENST00000447376 MAPK8IP3Q9UPT6 1336 aa21.73■■□□□ 1.07
SF3A1-204ENST00000447376 C5P01031 1676 aa21.72■■□□□ 1.07
SF3A1-204ENST00000447376 ANP32CO43423 234 aa21.72■■□□□ 1.07
SF3A1-204ENST00000447376 WDR43Q15061 677 aaKnown RBP eCLIP21.72■■□□□ 1.07
SF3A1-204ENST00000447376 LGR6Q9HBX8 967 aa21.72■■□□□ 1.07
SF3A1-204ENST00000447376 PHACTR3Q96KR7 559 aa21.71■■□□□ 1.07
SF3A1-204ENST00000447376 PPP1R1BQ9UD71 204 aaPredicted RBP21.71■■□□□ 1.07
SF3A1-204ENST00000447376 MSH5O43196 834 aa21.7■■□□□ 1.06
SF3A1-204ENST00000447376 FLAD1Q8NFF5 587 aa21.7■■□□□ 1.06
SF3A1-204ENST00000447376 MRC1P22897 1456 aa21.69■■□□□ 1.06
SF3A1-204ENST00000447376 CASZ1Q86V15 1759 aa21.69■■□□□ 1.06
SF3A1-204ENST00000447376 PTCD1O75127 700 aaKnown RBP21.68■■□□□ 1.06
SF3A1-204ENST00000447376 ZBTB7AO95365 584 aa21.68■■□□□ 1.06
SF3A1-204ENST00000447376 TTC5Q8N0Z6 440 aa21.68■■□□□ 1.06
SF3A1-204ENST00000447376 SLC16A10Q8TF71 515 aa21.68■■□□□ 1.06
SF3A1-204ENST00000447376 MTFR1LQ9H019 292 aa21.68■■□□□ 1.06
SF3A1-204ENST00000447376 QSER1Q2KHR3 1735 aa21.68■■□□□ 1.06
SF3A1-204ENST00000447376 VIRMAQ69YN4 1812 aaKnown RBP21.67■■□□□ 1.06
SF3A1-204ENST00000447376 TAF1LQ8IZX4 1826 aa21.67■■□□□ 1.06
SF3A1-204ENST00000447376 C4BP0C0L5 1744 aa21.66■■□□□ 1.06
SF3A1-204ENST00000447376 ADAMTS7Q9UKP4 1686 aa21.66■■□□□ 1.06
SF3A1-204ENST00000447376 PNPLA7Q6ZV29 1317 aa21.65■■□□□ 1.06
SF3A1-204ENST00000447376 HTATSF1O43719 755 aaKnown RBP21.65■■□□□ 1.06
SF3A1-204ENST00000447376 ZNF831Q5JPB2 1677 aa21.65■■□□□ 1.06
SF3A1-204ENST00000447376 PDGFDQ9GZP0 370 aaPredicted RBP21.64■■□□□ 1.05
SF3A1-204ENST00000447376 ATF5Q9Y2D1 282 aaPredicted RBP21.64■■□□□ 1.05
SF3A1-204ENST00000447376 LINC00116Q8NCU8 138 aa21.63■■□□□ 1.05
SF3A1-204ENST00000447376 IL17REQ8NFR9 667 aa21.63■■□□□ 1.05
SF3A1-204ENST00000447376 SSFA2P28290 1259 aa21.62■■□□□ 1.05
SF3A1-204ENST00000447376 POLD1P28340 1107 aa21.62■■□□□ 1.05
SF3A1-204ENST00000447376 ITPK1Q13572 414 aa21.62■■□□□ 1.05
SF3A1-204ENST00000447376 CEMIPQ8WUJ3 1361 aa21.61■■□□□ 1.05
SF3A1-204ENST00000447376 GNPATO15228 680 aa21.61■■□□□ 1.05
SF3A1-204ENST00000447376 PHF14O94880 888 aa21.61■■□□□ 1.05
SF3A1-204ENST00000447376 SLC39A6Q13433 755 aa21.61■■□□□ 1.05
SF3A1-204ENST00000447376 NFE2L2Q16236 605 aa21.61■■□□□ 1.05
SF3A1-204ENST00000447376 TUBGCP6Q96RT7 1819 aa21.6■■□□□ 1.05
SF3A1-204ENST00000447376 MCM10Q7L590 875 aa21.6■■□□□ 1.05
SF3A1-204ENST00000447376 PLEKHF1Q96S99 279 aa21.6■■□□□ 1.05
SF3A1-204ENST00000447376 RTCBQ9Y3I0 505 aaKnown RBP21.6■■□□□ 1.05
SF3A1-204ENST00000447376 BTBD11A6QL63 1104 aa21.59■■□□□ 1.05
SF3A1-204ENST00000447376 RC3H1Q5TC82 1133 aaKnown RBP21.59■■□□□ 1.05
SF3A1-204ENST00000447376 CNTNAP4Q9C0A0 1308 aa21.58■■□□□ 1.05
SF3A1-204ENST00000447376 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP21.58■■□□□ 1.05
SF3A1-204ENST00000447376 LMOD3Q0VAK6 560 aa21.58■■□□□ 1.05
SF3A1-204ENST00000447376 ZNF790Q6PG37 636 aa21.58■■□□□ 1.05
SF3A1-204ENST00000447376 COL23A1Q86Y22 540 aaPredicted RBP21.58■■□□□ 1.05
SF3A1-204ENST00000447376 VSIG10Q8N0Z9 540 aa21.58■■□□□ 1.05
SF3A1-204ENST00000447376 SRCAPQ6ZRS2 3230 aa21.57■■□□□ 1.04
SF3A1-204ENST00000447376 SLC4A9Q96Q91 983 aa21.57■■□□□ 1.04
SF3A1-204ENST00000447376 TRAPPC3LQ5T215 181 aa21.56■■□□□ 1.04
SF3A1-204ENST00000447376 RUNDC1Q96C34 613 aa21.56■■□□□ 1.04
SF3A1-204ENST00000447376 FMNL2Q96PY5 1086 aa21.56■■□□□ 1.04
SF3A1-204ENST00000447376 TEX13AQ9BXU3 409 aaPredicted RBP21.56■■□□□ 1.04
SF3A1-204ENST00000447376 COL5A3P25940 1745 aaPredicted RBP21.55■■□□□ 1.04
SF3A1-204ENST00000447376 ADRA2BP18089 450 aa21.55■■□□□ 1.04
SF3A1-204ENST00000447376 DCTN1Q14203 1278 aa21.55■■□□□ 1.04
SF3A1-204ENST00000447376 PNISRQ8TF01 805 aaKnown RBP21.55■■□□□ 1.04
SF3A1-204ENST00000447376 UBR3Q6ZT12 1888 aa21.55■■□□□ 1.04
SF3A1-204ENST00000447376 CICQ96RK0 1608 aaPredicted RBP21.55■■□□□ 1.04
SF3A1-204ENST00000447376 SIPA1L3O60292 1781 aaPredicted RBP21.54■■□□□ 1.04
SF3A1-204ENST00000447376 STARD3NLO95772 234 aa21.54■■□□□ 1.04
SF3A1-204ENST00000447376 CRKLP46109 303 aaKnown RBP21.54■■□□□ 1.04
SF3A1-204ENST00000447376 RIPK4P57078 832 aa21.54■■□□□ 1.04
SF3A1-204ENST00000447376 TAF7Q15545 349 aaPredicted RBP21.54■■□□□ 1.04
SF3A1-204ENST00000447376 DNAJC10Q8IXB1 793 aa21.54■■□□□ 1.04
SF3A1-204ENST00000447376 KCPQ6ZWJ8 1503 aa21.54■■□□□ 1.04
SF3A1-204ENST00000447376 RPS6KA4O75676 772 aa21.53■■□□□ 1.04
SF3A1-204ENST00000447376 PTGER2P43116 358 aa21.53■■□□□ 1.04
SF3A1-204ENST00000447376 CCDC146Q8IYE0 955 aa21.53■■□□□ 1.04
SF3A1-204ENST00000447376 ARXQ96QS3 562 aa21.53■■□□□ 1.04
SF3A1-204ENST00000447376 ADAMTS8Q9UP79 889 aa21.53■■□□□ 1.04
SF3A1-204ENST00000447376 DLG5Q8TDM6 1919 aa21.53■■□□□ 1.04
SF3A1-204ENST00000447376 TJP1Q07157 1748 aa21.52■■□□□ 1.04
SF3A1-204ENST00000447376 UBR2Q8IWV8 1755 aa21.52■■□□□ 1.04
SF3A1-204ENST00000447376 DCAF8L1A6NGE4 600 aa21.52■■□□□ 1.04
SF3A1-204ENST00000447376 RFC4P35249 363 aa21.52■■□□□ 1.04
SF3A1-204ENST00000447376 NPM2Q86SE8 214 aaKnown RBP21.52■■□□□ 1.04
SF3A1-204ENST00000447376 CCDC87Q9NVE4 849 aa21.52■■□□□ 1.04
SF3A1-204ENST00000447376 HEG1Q9ULI3 1381 aa21.51■■□□□ 1.03
SF3A1-204ENST00000447376 TMPOP42166 694 aaKnown RBP21.51■■□□□ 1.03
SF3A1-204ENST00000447376 ZNF496Q96IT1 587 aaPredicted RBP21.51■■□□□ 1.03
SF3A1-204ENST00000447376 NEUROD2Q15784 382 aa21.5■■□□□ 1.03
SF3A1-204ENST00000447376 MSL1Q68DK7 614 aa21.5■■□□□ 1.03
SF3A1-204ENST00000447376 MRS2Q9HD23 443 aa21.5■■□□□ 1.03
SF3A1-204ENST00000447376 DIEXFQ68CQ4 756 aaKnown RBP21.49■■□□□ 1.03
SF3A1-204ENST00000447376 SGIP1Q9BQI5 828 aa21.49■■□□□ 1.03
SF3A1-204ENST00000447376 CYP19A1P11511 503 aaPredicted RBP21.48■■□□□ 1.03
SF3A1-204ENST00000447376 KLHL34Q8N239 644 aa21.48■■□□□ 1.03
SF3A1-204ENST00000447376 ARHGEF1Q92888 912 aaKnown RBP21.47■■□□□ 1.03
SF3A1-204ENST00000447376 SNRPA1P09661 255 aaKnown RBP21.46■■□□□ 1.03
SF3A1-204ENST00000447376 SMIM5Q71RC9 77 aa21.46■■□□□ 1.03
SF3A1-204ENST00000447376 AMIGO3Q86WK7 504 aa21.46■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 40.2 ms