RNA–Protein interactions for RNA: ENST00000446312.5

DDR1-238, Transcript of discoidin domain receptor tyrosine kinase 1, human

TSL 5 BASIC

Gene DDR1, Length 3,202 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
DDR1-238	ENST00000446312	SURF6	O75683	361 aa	Known RBP	15.21	■□□□□ 0.03
DDR1-238	ENST00000446312	ZNF853	P0CG23	659 aa		15.21	■□□□□ 0.03
DDR1-238	ENST00000446312	HCLS1	P14317	486 aa	Predicted RBP	15.21	■□□□□ 0.03
DDR1-238	ENST00000446312	MYO5B	Q9ULV0	1848 aa		15.21	■□□□□ 0.03
DDR1-238	ENST00000446312	RICTOR	Q6R327	1708 aa		15.21	■□□□□ 0.02
DDR1-238	ENST00000446312	IGSF3	O75054	1194 aa		15.21	■□□□□ 0.02
DDR1-238	ENST00000446312	STK31	Q9BXU1	1019 aa		15.2	■□□□□ 0.02
DDR1-238	ENST00000446312	EIF2AK3	Q9NZJ5	1116 aa	Known RBP	15.2	■□□□□ 0.02
DDR1-238	ENST00000446312	NEO1	Q92859	1461 aa		15.2	■□□□□ 0.02
DDR1-238	ENST00000446312	ARHGEF28	Q8N1W1	1705 aa	Known RBP	15.2	■□□□□ 0.02
DDR1-238	ENST00000446312	USP48	Q86UV5	1035 aa		15.2	■□□□□ 0.02
DDR1-238	ENST00000446312	SMAP1	Q8IYB5	467 aa	Predicted RBP	15.2	■□□□□ 0.02
DDR1-238	ENST00000446312	ARHGAP45	Q92619	1136 aa		15.2	■□□□□ 0.02
DDR1-238	ENST00000446312	PHAX	Q9H814	394 aa	Known RBP	15.2	■□□□□ 0.02
DDR1-238	ENST00000446312	SLC52A1	Q9NWF4	448 aa		15.2	■□□□□ 0.02
DDR1-238	ENST00000446312	LMOD3	Q0VAK6	560 aa		15.19	■□□□□ 0.02
DDR1-238	ENST00000446312	RIMS2	Q9UQ26	1411 aa		15.19	■□□□□ 0.02
DDR1-238	ENST00000446312	RTL1	A6NKG5	1358 aa		15.19	■□□□□ 0.02
DDR1-238	ENST00000446312	FBXW7	Q969H0	707 aa		15.19	■□□□□ 0.02
DDR1-238	ENST00000446312	VPS37C	A5D8V6	355 aa	Predicted RBP	15.19	■□□□□ 0.02
DDR1-238	ENST00000446312	HMMR	O75330	724 aa		15.19	■□□□□ 0.02
DDR1-238	ENST00000446312	OFD1	O75665	1012 aa		15.19	■□□□□ 0.02
DDR1-238	ENST00000446312	MX1	P20591	662 aa		15.19	■□□□□ 0.02
DDR1-238	ENST00000446312	GIMAP6	Q6P9H5	292 aa		15.19	■□□□□ 0.02
DDR1-238	ENST00000446312	PPP1R9B	Q96SB3	815 aa		15.18	■□□□□ 0.02
DDR1-238	ENST00000446312	MAP7D2	Q96T17	732 aa		15.18	■□□□□ 0.02
DDR1-238	ENST00000446312	CCDC61	Q9Y6R9	512 aa		15.18	■□□□□ 0.02
DDR1-238	ENST00000446312	COL3A1	P02461	1466 aa	Predicted RBP	15.18	■□□□□ 0.02
DDR1-238	ENST00000446312	CD163L1	Q9NR16	1453 aa		15.18	■□□□□ 0.02
DDR1-238	ENST00000446312	CAMK4	Q16566	473 aa		15.18	■□□□□ 0.02
DDR1-238	ENST00000446312	RPAP2	Q8IXW5	612 aa	Predicted RBP	15.18	■□□□□ 0.02
DDR1-238	ENST00000446312	LRRCC1	Q9C099	1032 aa		15.18	■□□□□ 0.02
DDR1-238	ENST00000446312	FAM135B	Q49AJ0	1406 aa		15.18	■□□□□ 0.02
DDR1-238	ENST00000446312	GNAI2	P04899	355 aa		15.17	■□□□□ 0.02
DDR1-238	ENST00000446312	LMOD2	Q6P5Q4	547 aa		15.17	■□□□□ 0.02
DDR1-238	ENST00000446312	NECAB1	Q8N987	351 aa		15.17	■□□□□ 0.02
DDR1-238	ENST00000446312	ESYT1	Q9BSJ8	1104 aa		15.17	■□□□□ 0.02
DDR1-238	ENST00000446312	PDZRN4	Q6ZMN7	1036 aa	Predicted RBP	15.17	■□□□□ 0.02
DDR1-238	ENST00000446312	NGDN	Q8NEJ9	315 aa	Known RBP	15.17	■□□□□ 0.02
DDR1-238	ENST00000446312	LRSAM1	Q6UWE0	723 aa		15.17	■□□□□ 0.02
DDR1-238	ENST00000446312	TSPY26P	Q9H489	355 aa		15.17	■□□□□ 0.02
DDR1-238	ENST00000446312	IGF2BP2	Q9Y6M1	599 aa	Known RBP eCLIP	15.17	■□□□□ 0.02	1e-7	■■■□□ 14.9
DDR1-238	ENST00000446312	CEBPA	P49715	358 aa	Predicted RBP	15.16	■□□□□ 0.02
DDR1-238	ENST00000446312	FAM69C	Q0P6D2	419 aa		15.16	■□□□□ 0.02
DDR1-238	ENST00000446312	PPP4R3B	Q5MIZ7	849 aa		15.16	■□□□□ 0.02
DDR1-238	ENST00000446312	CCDC83	Q8IWF9	413 aa		15.16	■□□□□ 0.02
DDR1-238	ENST00000446312	STK3	Q13188	491 aa		15.15	■□□□□ 0.02
DDR1-238	ENST00000446312	ACE	P12821	1306 aa		15.15	■□□□□ 0.02
DDR1-238	ENST00000446312	PRR36	Q9H6K5	1346 aa		15.15	■□□□□ 0.02
DDR1-238	ENST00000446312	KCNJ4	P48050	445 aa		15.15	■□□□□ 0.02
DDR1-238	ENST00000446312	ZNF445	P59923	1031 aa		15.15	■□□□□ 0.02
DDR1-238	ENST00000446312	FLII	Q13045	1269 aa		15.15	■□□□□ 0.02
DDR1-238	ENST00000446312	COL9A3	Q14050	684 aa	Predicted RBP	15.15	■□□□□ 0.02
DDR1-238	ENST00000446312	MAP3K19	Q56UN5	1328 aa		15.15	■□□□□ 0.02
DDR1-238	ENST00000446312	ZMYM3	Q14202	1370 aa		15.15	■□□□□ 0.02
DDR1-238	ENST00000446312	MCC	P23508	829 aa		15.15	■□□□□ 0.02
DDR1-238	ENST00000446312	CHL1	O00533	1208 aa		15.14	■□□□□ 0.01
DDR1-238	ENST00000446312	CYP2E1	P05181	493 aa	Predicted RBP	15.14	■□□□□ 0.01
DDR1-238	ENST00000446312	CHML	P26374	656 aa		15.14	■□□□□ 0.01
DDR1-238	ENST00000446312	ZFP91	Q96JP5	570 aa	Predicted RBP	15.14	■□□□□ 0.01
DDR1-238	ENST00000446312	MET	P08581	1390 aa		15.14	■□□□□ 0.01
DDR1-238	ENST00000446312	RASEF	Q8IZ41	740 aa		15.14	■□□□□ 0.01
DDR1-238	ENST00000446312	PA2G4	Q9UQ80	394 aa	Known RBP	15.14	■□□□□ 0.01
DDR1-238	ENST00000446312	ZKSCAN5	Q9Y2L8	839 aa		15.14	■□□□□ 0.01
DDR1-238	ENST00000446312	LARGE1	O95461	756 aa		15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	SPDYE4	A6NLX3	237 aa		15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	SRGAP3	O43295	1099 aa		15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	SIL1	Q9H173	461 aa		15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	ISY1	Q9ULR0	285 aa	Known RBP	15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	PNPLA6	Q8IY17	1366 aa		15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	ARHGAP31	Q2M1Z3	1444 aa		15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	CBX1	P83916	185 aa		15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	CEBPZ	Q03701	1054 aa	Known RBP	15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	AIMP1	Q12904	312 aa	Known RBP	15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	CHMP4A	Q9BY43	222 aa		15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	SRCIN1	Q9C0H9	1055 aa		15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	NDUFB9	Q9Y6M9	179 aa		15.13	■□□□□ 0.01
DDR1-238	ENST00000446312	UBTFL1	P0CB47	393 aa	Predicted RBP	15.12	■□□□□ 0.01
DDR1-238	ENST00000446312	NLRP6	P59044	892 aa		15.12	■□□□□ 0.01
DDR1-238	ENST00000446312	CWC22	Q9HCG8	908 aa	Known RBP	15.12	■□□□□ 0.01
DDR1-238	ENST00000446312	NOL7	Q9UMY1	257 aa	Known RBP	15.12	■□□□□ 0.01
DDR1-238	ENST00000446312	KCNQ3	O43525	872 aa		15.12	■□□□□ 0.01
DDR1-238	ENST00000446312	PTMS	P20962	102 aa		15.12	■□□□□ 0.01
DDR1-238	ENST00000446312	PPP1R42	Q7Z4L9	355 aa		15.12	■□□□□ 0.01
DDR1-238	ENST00000446312	PTCH1	Q13635	1447 aa		15.12	■□□□□ 0.01
DDR1-238	ENST00000446312		A0A087WWV3	80 aa		15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	ADCY5	O95622	1261 aa		15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	CKAP2L	Q8IYA6	745 aa		15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	TFIP11	Q9UBB9	837 aa	Known RBP	15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	TMEM131L	A2VDJ0	1609 aa		15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	NBPF7	P0C2Y1	421 aa	Predicted RBP	15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	CAST	P20810	708 aa	Known RBP	15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	DNM1	Q05193	864 aa	Known RBP	15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	PREX1	Q8TCU6	1659 aa		15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	USP32	Q8NFA0	1604 aa		15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	ADGRB2	O60241	1585 aa		15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	ATP10D	Q9P241	1426 aa		15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	PIP4K2A	P48426	406 aa	Predicted RBP	15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	PRPF40B	Q6NWY9	871 aa	Known RBP	15.11	■□□□□ 0.01
DDR1-238	ENST00000446312	EYA1	Q99502	592 aa		15.11	■□□□□ 0.01

Retrieved 100 of 20,778 RNA–protein pairs in 36.7 ms