RNA–Protein interactions for RNA: ENST00000442708.5

USP39-205, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 4

Gene USP39, Length 561 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-205ENST00000442708 CEMIPQ8WUJ3 1361 aa21.23■□□□□ 0.99
USP39-205ENST00000442708 NEFMP07197 916 aa21.22■□□□□ 0.99
USP39-205ENST00000442708 TMPOP42166 694 aaKnown RBP21.22■□□□□ 0.99
USP39-205ENST00000442708 MCM10Q7L590 875 aa21.22■□□□□ 0.99
USP39-205ENST00000442708 SLC52A2Q9HAB3 445 aa21.22■□□□□ 0.99
USP39-205ENST00000442708 ATG3Q9NT62 314 aa21.21■□□□□ 0.99
USP39-205ENST00000442708 RRP7AQ9Y3A4 280 aaKnown RBP21.21■□□□□ 0.99
USP39-205ENST00000442708 PAPPAQ13219 1627 aa21.21■□□□□ 0.99
USP39-205ENST00000442708 KCNQ4P56696 695 aa21.2■□□□□ 0.98
USP39-205ENST00000442708 TXNRD1Q16881 649 aa21.2■□□□□ 0.98
USP39-205ENST00000442708 LRRC4BQ9NT99 713 aa21.19■□□□□ 0.98
USP39-205ENST00000442708 PALLDQ8WX93 1383 aa21.19■□□□□ 0.98
USP39-205ENST00000442708 CCER2I3L3R5 266 aa21.18■□□□□ 0.98
USP39-205ENST00000442708 HTATSF1O43719 755 aaKnown RBP21.18■□□□□ 0.98
USP39-205ENST00000442708 RIPK4P57078 832 aa21.18■□□□□ 0.98
USP39-205ENST00000442708 THUMPD2Q9BTF0 503 aaKnown RBP21.18■□□□□ 0.98
USP39-205ENST00000442708 SENP3-EIF4A1A0A087X0R7 540 aa21.17■□□□□ 0.98
USP39-205ENST00000442708 APAF1O14727 1248 aa21.17■□□□□ 0.98
USP39-205ENST00000442708 NEUROD2Q15784 382 aa21.17■□□□□ 0.98
USP39-205ENST00000442708 FAM9BQ8IZU0 186 aa21.17■□□□□ 0.98
USP39-205ENST00000442708 TAF1LQ8IZX4 1826 aa21.16■□□□□ 0.98
USP39-205ENST00000442708 RTF1Q92541 710 aaKnown RBP21.16■□□□□ 0.98
USP39-205ENST00000442708 SLC39A6Q13433 755 aa21.15■□□□□ 0.98
USP39-205ENST00000442708 SMARCC1Q92922 1105 aaPredicted RBP21.15■□□□□ 0.98
USP39-205ENST00000442708 TRIM35Q9UPQ4 493 aa21.15■□□□□ 0.98
USP39-205ENST00000442708 UBR2Q8IWV8 1755 aa21.15■□□□□ 0.98
USP39-205ENST00000442708 TEFQ10587 303 aa21.14■□□□□ 0.97
USP39-205ENST00000442708 SLC4A9Q96Q91 983 aa21.14■□□□□ 0.97
USP39-205ENST00000442708 C5P01031 1676 aa21.13■□□□□ 0.97
USP39-205ENST00000442708 ANO8Q9HCE9 1232 aaPredicted RBP21.13■□□□□ 0.97
USP39-205ENST00000442708 CCNL1Q9UK58 526 aaPredicted RBP21.13■□□□□ 0.97
USP39-205ENST00000442708 KCPQ6ZWJ8 1503 aa21.13■□□□□ 0.97
USP39-205ENST00000442708 ZNF831Q5JPB2 1677 aa21.12■□□□□ 0.97
USP39-205ENST00000442708 SLC27A3Q5K4L6 730 aa21.12■□□□□ 0.97
USP39-205ENST00000442708 LOC102724428A0A0B4J2F2 783 aa21.11■□□□□ 0.97
USP39-205ENST00000442708 KCNQ3O43525 872 aa21.11■□□□□ 0.97
USP39-205ENST00000442708 SIK1P57059 783 aa21.11■□□□□ 0.97
USP39-205ENST00000442708 TJP1Q07157 1748 aa21.1■□□□□ 0.97
USP39-205ENST00000442708 PTCD1O75127 700 aaKnown RBP21.1■□□□□ 0.97
USP39-205ENST00000442708 RBM42Q9BTD8 480 aaKnown RBP21.1■□□□□ 0.97
USP39-205ENST00000442708 KDM3BQ7LBC6 1761 aa21.1■□□□□ 0.97
USP39-205ENST00000442708 TUBGCP6Q96RT7 1819 aa21.09■□□□□ 0.97
USP39-205ENST00000442708 ITPK1Q13572 414 aa21.09■□□□□ 0.97
USP39-205ENST00000442708 MIS18AQ9NYP9 233 aa21.09■□□□□ 0.97
USP39-205ENST00000442708 BTBD11A6QL63 1104 aa21.08■□□□□ 0.97
USP39-205ENST00000442708 COL5A3P25940 1745 aaPredicted RBP21.08■□□□□ 0.97
USP39-205ENST00000442708 LMOD3Q0VAK6 560 aa21.08■□□□□ 0.97
USP39-205ENST00000442708 TAF7Q15545 349 aaPredicted RBP21.08■□□□□ 0.97
USP39-205ENST00000442708 ZNF827Q17R98 1081 aa21.08■□□□□ 0.97
USP39-205ENST00000442708 CICQ96RK0 1608 aaPredicted RBP21.07■□□□□ 0.96
USP39-205ENST00000442708 C4BP0C0L5 1744 aa21.07■□□□□ 0.96
USP39-205ENST00000442708 ZNF790Q6PG37 636 aa21.07■□□□□ 0.96
USP39-205ENST00000442708 ATP6V1AP38606 617 aa21.06■□□□□ 0.96
USP39-205ENST00000442708 LINC00116Q8NCU8 138 aa21.06■□□□□ 0.96
USP39-205ENST00000442708 AKT1S1Q96B36 256 aa21.06■□□□□ 0.96
USP39-205ENST00000442708 PSDA5PKW4 1024 aaPredicted RBP21.05■□□□□ 0.96
USP39-205ENST00000442708 ZNF496Q96IT1 587 aaPredicted RBP21.05■□□□□ 0.96
USP39-205ENST00000442708 R3HDM1Q15032 1099 aaKnown RBP21.04■□□□□ 0.96
USP39-205ENST00000442708 MYH14Q7Z406 1995 aaKnown RBP21.04■□□□□ 0.96
USP39-205ENST00000442708 NBPF14Q5TI25 921 aa21.03■□□□□ 0.96
USP39-205ENST00000442708 TTC5Q8N0Z6 440 aa21.03■□□□□ 0.96
USP39-205ENST00000442708 SLC15A2Q16348 729 aa21.02■□□□□ 0.96
USP39-205ENST00000442708 SALL2Q9Y467 1007 aaPredicted RBP21.02■□□□□ 0.96
USP39-205ENST00000442708 QSER1Q2KHR3 1735 aa21.01■□□□□ 0.95
USP39-205ENST00000442708 UBR3Q6ZT12 1888 aa21.01■□□□□ 0.95
USP39-205ENST00000442708 AMIGO3Q86WK7 504 aa21.01■□□□□ 0.95
USP39-205ENST00000442708 DNAJC10Q8IXB1 793 aa21.01■□□□□ 0.95
USP39-205ENST00000442708 STK32BQ9NY57 414 aa21.01■□□□□ 0.95
USP39-205ENST00000442708 HEG1Q9ULI3 1381 aa21■□□□□ 0.95
USP39-205ENST00000442708 CCDC27Q2M243 656 aa21■□□□□ 0.95
USP39-205ENST00000442708 SMIM5Q71RC9 77 aa21■□□□□ 0.95
USP39-205ENST00000442708 WWC1Q8IX03 1113 aa21■□□□□ 0.95
USP39-205ENST00000442708 PDGFDQ9GZP0 370 aaPredicted RBP21■□□□□ 0.95
USP39-205ENST00000442708 CASZ1Q86V15 1759 aa21■□□□□ 0.95
USP39-205ENST00000442708 PRAMEF22A3QJZ6 481 aa20.99■□□□□ 0.95
USP39-205ENST00000442708 CHL1O00533 1208 aa20.99■□□□□ 0.95
USP39-205ENST00000442708 FMNL2Q96PY5 1086 aa20.99■□□□□ 0.95
USP39-205ENST00000442708 ZNF853P0CG23 659 aa20.98■□□□□ 0.95
USP39-205ENST00000442708 EIF4A1P60842 406 aaKnown RBP20.98■□□□□ 0.95
USP39-205ENST00000442708 NCBP3Q53F19 620 aaKnown RBP20.98■□□□□ 0.95
USP39-205ENST00000442708 VSIG10Q8N0Z9 540 aa20.98■□□□□ 0.95
USP39-205ENST00000442708 TSPYL4Q9UJ04 414 aa20.98■□□□□ 0.95
USP39-205ENST00000442708 LAS1LQ9Y4W2 734 aaKnown RBP20.98■□□□□ 0.95
USP39-205ENST00000442708 CYP19A1P11511 503 aaPredicted RBP20.97■□□□□ 0.95
USP39-205ENST00000442708 CRKLP46109 303 aaKnown RBP20.96■□□□□ 0.95
USP39-205ENST00000442708 BABAM1Q9NWV8 329 aa20.96■□□□□ 0.95
USP39-205ENST00000442708 TFCP2L1Q9NZI6 479 aa20.96■□□□□ 0.95
USP39-205ENST00000442708 PNPLA7Q6ZV29 1317 aa20.96■□□□□ 0.95
USP39-205ENST00000442708 CNTNAP4Q9C0A0 1308 aa20.96■□□□□ 0.95
USP39-205ENST00000442708 INTS5Q6P9B9 1019 aaKnown RBP20.95■□□□□ 0.94
USP39-205ENST00000442708 CFAP44Q96MT7 982 aa20.95■□□□□ 0.94
USP39-205ENST00000442708 LAMB4A4D0S4 1761 aa20.95■□□□□ 0.94
USP39-205ENST00000442708 RC3H1Q5TC82 1133 aaKnown RBP20.94■□□□□ 0.94
USP39-205ENST00000442708 AK7Q96M32 723 aa20.94■□□□□ 0.94
USP39-205ENST00000442708 MBIPQ9NS73 344 aa20.94■□□□□ 0.94
USP39-205ENST00000442708 USP16Q9Y5T5 823 aa20.94■□□□□ 0.94
USP39-205ENST00000442708 LRP5O75197 1615 aa20.93■□□□□ 0.94
USP39-205ENST00000442708 GNPATO15228 680 aa20.93■□□□□ 0.94
USP39-205ENST00000442708 KRT24Q2M2I5 525 aa20.93■□□□□ 0.94
USP39-205ENST00000442708 IFT57Q9NWB7 429 aa20.93■□□□□ 0.94
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms