RNA–Protein interactions for RNA: ENST00000439160.6

TCOF1-205, Transcript of treacle ribosome biogenesis factor 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene TCOF1, Length 4,644 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-205ENST00000439160 EXOC5O00471 708 aa14.71□□□□□ -0.05
TCOF1-205ENST00000439160 RAB11FIP3O75154 756 aa14.71□□□□□ -0.05
TCOF1-205ENST00000439160 CCDC73Q6ZRK6 1079 aa14.71□□□□□ -0.05
TCOF1-205ENST00000439160 CHPF2Q9P2E5 772 aa14.71□□□□□ -0.05
TCOF1-205ENST00000439160 VAMP4O75379 141 aa14.71□□□□□ -0.06
TCOF1-205ENST00000439160 ATP2B1P20020 1258 aa14.71□□□□□ -0.06
TCOF1-205ENST00000439160 ARHGAP45Q92619 1136 aa14.71□□□□□ -0.06
TCOF1-205ENST00000439160 SPATA31E1Q6ZUB1 1445 aa14.71□□□□□ -0.06
TCOF1-205ENST00000439160 TPD52L1Q16890 204 aaPredicted RBP14.7□□□□□ -0.06
TCOF1-205ENST00000439160 BLOC1S2Q6QNY1 142 aa14.7□□□□□ -0.06
TCOF1-205ENST00000439160 PPP1R42Q7Z4L9 355 aa14.7□□□□□ -0.06
TCOF1-205ENST00000439160 DMRT2Q9Y5R5 561 aa14.7□□□□□ -0.06
TCOF1-205ENST00000439160 PDCP20941 246 aa14.7□□□□□ -0.06
TCOF1-205ENST00000439160 RSPH6AQ9H0K4 717 aa14.7□□□□□ -0.06
TCOF1-205ENST00000439160 GPTP24298 496 aa14.7□□□□□ -0.06
TCOF1-205ENST00000439160 SAMD9LQ8IVG5 1584 aa14.7□□□□□ -0.06
TCOF1-205ENST00000439160 SART3Q15020 963 aaKnown RBP14.7□□□□□ -0.06
TCOF1-205ENST00000439160 SAMD1Q6SPF0 538 aaPredicted RBP14.7□□□□□ -0.06
TCOF1-205ENST00000439160 MRPL50Q8N5N7 158 aaKnown RBP14.7□□□□□ -0.06
TCOF1-205ENST00000439160 NGLY1Q96IV0 654 aa14.7□□□□□ -0.06
TCOF1-205ENST00000439160 GNL3LQ9NVN8 582 aaKnown RBP14.7□□□□□ -0.06
TCOF1-205ENST00000439160 NEO1Q92859 1461 aa14.7□□□□□ -0.06
TCOF1-205ENST00000439160 IDH1O75874 414 aaKnown RBP14.69□□□□□ -0.06
TCOF1-205ENST00000439160 METTL24Q5JXM2 366 aa14.69□□□□□ -0.06
TCOF1-205ENST00000439160 UBE3BQ7Z3V4 1068 aa14.69□□□□□ -0.06
TCOF1-205ENST00000439160 CEBPZQ03701 1054 aaKnown RBP14.69□□□□□ -0.06
TCOF1-205ENST00000439160 LTKP29376 864 aa14.69□□□□□ -0.06
TCOF1-205ENST00000439160 ORAI2Q96SN7 254 aa14.69□□□□□ -0.06
TCOF1-205ENST00000439160 PIK3R4Q99570 1358 aa14.68□□□□□ -0.06
TCOF1-205ENST00000439160 PTPRTO14522 1441 aa14.68□□□□□ -0.06
TCOF1-205ENST00000439160 NPC1L1Q9UHC9 1359 aa14.68□□□□□ -0.06
TCOF1-205ENST00000439160 PIP4K2AP48426 406 aaPredicted RBP14.68□□□□□ -0.06
TCOF1-205ENST00000439160 SASS6Q6UVJ0 657 aa14.68□□□□□ -0.06
TCOF1-205ENST00000439160 TTC37Q6PGP7 1564 aa14.68□□□□□ -0.06
TCOF1-205ENST00000439160 SNRPA1P09661 255 aaKnown RBP14.67□□□□□ -0.06
TCOF1-205ENST00000439160 MYO5CQ9NQX4 1742 aa14.67□□□□□ -0.06
TCOF1-205ENST00000439160 SDF4Q9BRK5 362 aa14.67□□□□□ -0.06
TCOF1-205ENST00000439160 CWC22Q9HCG8 908 aaKnown RBP14.67□□□□□ -0.06
TCOF1-205ENST00000439160 HOXC9P31274 260 aa14.67□□□□□ -0.06
TCOF1-205ENST00000439160 HDAC1Q13547 482 aaPredicted RBP14.67□□□□□ -0.06
TCOF1-205ENST00000439160 PDRG1Q9NUG6 133 aa14.67□□□□□ -0.06
TCOF1-205ENST00000439160 TRMT112Q9UI30 125 aaKnown RBP14.67□□□□□ -0.06
TCOF1-205ENST00000439160 TBC1D9Q6ZT07 1266 aa14.67□□□□□ -0.06
TCOF1-205ENST00000439160 CASTP20810 708 aaKnown RBP14.66□□□□□ -0.06
TCOF1-205ENST00000439160 HSP90AA2PQ14568 343 aaPredicted RBP14.66□□□□□ -0.06
TCOF1-205ENST00000439160 BMP2KLQ5H9B9 411 aa14.66□□□□□ -0.06
TCOF1-205ENST00000439160 AKAP4Q5JQC9 854 aa14.66□□□□□ -0.06
TCOF1-205ENST00000439160 PRPF40BQ6NWY9 871 aaKnown RBP14.66□□□□□ -0.06
TCOF1-205ENST00000439160 ABCF2Q9UG63 623 aa14.66□□□□□ -0.06
TCOF1-205ENST00000439160 IGHMBP2P38935 993 aaKnown RBP14.66□□□□□ -0.06
TCOF1-205ENST00000439160 ANKRD13DQ6ZTN6 518 aa14.66□□□□□ -0.06
TCOF1-205ENST00000439160 ERCC6L2Q5T890 1561 aa14.66□□□□□ -0.06
TCOF1-205ENST00000439160 ADGBQ8N7X0 1667 aa14.66□□□□□ -0.06
TCOF1-205ENST00000439160 IL13P35225 146 aa14.65□□□□□ -0.06
TCOF1-205ENST00000439160 IFIT5Q13325 482 aaKnown RBP14.65□□□□□ -0.06
TCOF1-205ENST00000439160 PHF23Q9BUL5 403 aaPredicted RBP14.65□□□□□ -0.06
TCOF1-205ENST00000439160 LARP1BQ659C4 914 aaKnown RBP14.65□□□□□ -0.06
TCOF1-205ENST00000439160 COPS6Q7L5N1 327 aa14.65□□□□□ -0.06
TCOF1-205ENST00000439160 ZCRB1Q8TBF4 217 aaKnown RBP14.65□□□□□ -0.06
TCOF1-205ENST00000439160 ZFYVE9O95405 1425 aa14.65□□□□□ -0.06
TCOF1-205ENST00000439160 MBD3O95983 291 aa14.65□□□□□ -0.06
TCOF1-205ENST00000439160 ANKRD1Q15327 319 aa14.65□□□□□ -0.06
TCOF1-205ENST00000439160 NACAP1Q9BZK3 213 aa14.65□□□□□ -0.06
TCOF1-205ENST00000439160 NFATC2IPQ8NCF5 419 aa14.65□□□□□ -0.06
TCOF1-205ENST00000439160 XAGE3Q8WTP9 111 aa14.65□□□□□ -0.06
TCOF1-205ENST00000439160 LRP2BPQ9P2M1 347 aa14.65□□□□□ -0.06
TCOF1-205ENST00000439160 TBC1D2Q9BYX2 928 aa14.64□□□□□ -0.07
TCOF1-205ENST00000439160 TMEM2Q9UHN6 1383 aa14.64□□□□□ -0.07
TCOF1-205ENST00000439160 IFIT1P09914 478 aaKnown RBP14.64□□□□□ -0.07
TCOF1-205ENST00000439160 NASPP49321 788 aaPredicted RBP14.64□□□□□ -0.07
TCOF1-205ENST00000439160 NUCB1Q02818 461 aa14.64□□□□□ -0.07
TCOF1-205ENST00000439160 RAI14Q9P0K7 980 aa14.64□□□□□ -0.07
TCOF1-205ENST00000439160 MCM4P33991 863 aa14.64□□□□□ -0.07
TCOF1-205ENST00000439160 MRE11P49959 708 aa14.64□□□□□ -0.07
TCOF1-205ENST00000439160 ECHDC1Q9NTX5 307 aa14.64□□□□□ -0.07
TCOF1-205ENST00000439160 WDR33Q9C0J8 1336 aaKnown RBP14.64□□□□□ -0.07
TCOF1-205ENST00000439160 TRPM2O94759 1503 aa14.63□□□□□ -0.07
TCOF1-205ENST00000439160 UGGT1Q9NYU2 1555 aa14.63□□□□□ -0.07
TCOF1-205ENST00000439160 ZSCAN25Q6NSZ9 544 aa14.63□□□□□ -0.07
TCOF1-205ENST00000439160 ANKRD44Q8N8A2 993 aa14.63□□□□□ -0.07
TCOF1-205ENST00000439160 IP6K1Q92551 441 aa14.63□□□□□ -0.07
TCOF1-205ENST00000439160 TRIM35Q9UPQ4 493 aa14.63□□□□□ -0.07
TCOF1-205ENST00000439160 XBP1P17861 261 aa14.62□□□□□ -0.07
TCOF1-205ENST00000439160 EDC4Q6P2E9 1401 aaKnown RBP14.62□□□□□ -0.07
TCOF1-205ENST00000439160 VSIG10Q8N0Z9 540 aa14.62□□□□□ -0.07
TCOF1-205ENST00000439160 AKAP2Q9Y2D5 859 aa14.62□□□□□ -0.07
TCOF1-205ENST00000439160 CHD1O14646 1710 aa14.62□□□□□ -0.07
TCOF1-205ENST00000439160 TDO2P48775 406 aa14.62□□□□□ -0.07
TCOF1-205ENST00000439160 C16orf71Q8IYS4 520 aaPredicted RBP14.62□□□□□ -0.07
TCOF1-205ENST00000439160 RHPN1Q8TCX5 695 aa14.62□□□□□ -0.07
TCOF1-205ENST00000439160 CTNNA3Q9UI47 895 aa14.62□□□□□ -0.07
TCOF1-205ENST00000439160 ZNF652Q9Y2D9 606 aa14.62□□□□□ -0.07
TCOF1-205ENST00000439160 CWC25Q9NXE8 425 aaPredicted RBP14.61□□□□□ -0.07
TCOF1-205ENST00000439160 TTC22Q5TAA0 569 aa14.61□□□□□ -0.07
TCOF1-205ENST00000439160 LARP6Q9BRS8 491 aaKnown RBP14.61□□□□□ -0.07
TCOF1-205ENST00000439160 HOOK1Q9UJC3 728 aaKnown RBP14.61□□□□□ -0.07
TCOF1-205ENST00000439160 CIZ1Q9ULV3 898 aaPredicted RBP14.61□□□□□ -0.07
TCOF1-205ENST00000439160 KRT32Q14532 448 aa14.61□□□□□ -0.07
TCOF1-205ENST00000439160 NUP133Q8WUM0 1156 aa14.61□□□□□ -0.07
TCOF1-205ENST00000439160 DDX11Q96FC9 970 aa14.61□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms