RNA–Protein interactions for RNA: ENST00000438395.5

VPS50-204, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 3

Gene VPS50, Length 538 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-204ENST00000438395 L3MBTL3Q96JM7 780 aaPredicted RBP10.83□□□□□ -0.68
VPS50-204ENST00000438395 SMG6Q86US8 1419 aaKnown RBP10.83□□□□□ -0.68
VPS50-204ENST00000438395 USP54Q70EL1 1684 aa10.82□□□□□ -0.68
VPS50-204ENST00000438395 ANKRD36BQ8N2N9 1353 aa10.82□□□□□ -0.68
VPS50-204ENST00000438395 SLC15A2Q16348 729 aa10.82□□□□□ -0.68
VPS50-204ENST00000438395 C3orf67Q6ZVT6 689 aa10.82□□□□□ -0.68
VPS50-204ENST00000438395 SYTL4Q96C24 671 aaPredicted RBP10.82□□□□□ -0.68
VPS50-204ENST00000438395 TESK2Q96S53 571 aa10.82□□□□□ -0.68
VPS50-204ENST00000438395 STK24Q9Y6E0 443 aa10.82□□□□□ -0.68
VPS50-204ENST00000438395 MAP3K19Q56UN5 1328 aa10.82□□□□□ -0.68
VPS50-204ENST00000438395 RGPD5Q99666 1765 aa10.81□□□□□ -0.68
VPS50-204ENST00000438395 POTEGQ6S5H5 508 aa10.81□□□□□ -0.68
VPS50-204ENST00000438395 RTL1A6NKG5 1358 aa10.8□□□□□ -0.68
VPS50-204ENST00000438395 NHSQ6T4R5 1651 aa10.8□□□□□ -0.68
VPS50-204ENST00000438395 SBF2Q86WG5 1849 aa10.8□□□□□ -0.68
VPS50-204ENST00000438395 HOXC9P31274 260 aa10.8□□□□□ -0.68
VPS50-204ENST00000438395 MTFR1LQ9H019 292 aa10.8□□□□□ -0.68
VPS50-204ENST00000438395 LTN1O94822 1766 aa10.8□□□□□ -0.68
VPS50-204ENST00000438395 STK25O00506 426 aa10.79□□□□□ -0.68
VPS50-204ENST00000438395 RAPGEF4Q8WZA2 1011 aa10.79□□□□□ -0.68
VPS50-204ENST00000438395 MS4A4AQ96JQ5 239 aa10.79□□□□□ -0.68
VPS50-204ENST00000438395 BOLA1Q9Y3E2 137 aa10.79□□□□□ -0.68
VPS50-204ENST00000438395 SLC27A3Q5K4L6 730 aa10.78□□□□□ -0.68
VPS50-204ENST00000438395 ZCRB1Q8TBF4 217 aaKnown RBP10.78□□□□□ -0.68
VPS50-204ENST00000438395 PDGFDQ9GZP0 370 aaPredicted RBP10.78□□□□□ -0.68
VPS50-204ENST00000438395 GGNBP2Q9H3C7 697 aa10.78□□□□□ -0.68
VPS50-204ENST00000438395 FAM208AQ9UK61 1670 aaKnown RBP10.78□□□□□ -0.68
VPS50-204ENST00000438395 RRS1Q15050 365 aaKnown RBP10.77□□□□□ -0.69
VPS50-204ENST00000438395 CGNL1Q0VF96 1302 aa10.77□□□□□ -0.69
VPS50-204ENST00000438395 CASZ1Q86V15 1759 aa10.76□□□□□ -0.69
VPS50-204ENST00000438395 TATP17735 454 aaPredicted RBP10.76□□□□□ -0.69
VPS50-204ENST00000438395 POLD1P28340 1107 aa10.76□□□□□ -0.69
VPS50-204ENST00000438395 PTGER2P43116 358 aa10.76□□□□□ -0.69
VPS50-204ENST00000438395 PRIM1P49642 420 aaKnown RBP10.76□□□□□ -0.69
VPS50-204ENST00000438395 FHDC1Q9C0D6 1143 aaPredicted RBP10.76□□□□□ -0.69
VPS50-204ENST00000438395 TFCP2L1Q9NZI6 479 aa10.76□□□□□ -0.69
VPS50-204ENST00000438395 FYB1O15117 783 aa10.75□□□□□ -0.69
VPS50-204ENST00000438395 FBLN1P23142 703 aa10.75□□□□□ -0.69
VPS50-204ENST00000438395 ARXQ96QS3 562 aa10.75□□□□□ -0.69
VPS50-204ENST00000438395 FLT4P35916 1363 aa10.75□□□□□ -0.69
VPS50-204ENST00000438395 MEGF6O75095 1541 aa10.74□□□□□ -0.69
VPS50-204ENST00000438395 G3V3G9 751 aa10.74□□□□□ -0.69
VPS50-204ENST00000438395 PPM1GO15355 546 aaPredicted RBP10.74□□□□□ -0.69
VPS50-204ENST00000438395 ST18O60284 1047 aa10.74□□□□□ -0.69
VPS50-204ENST00000438395 HMGB2P26583 209 aaKnown RBP10.74□□□□□ -0.69
VPS50-204ENST00000438395 ZNF827Q17R98 1081 aa10.74□□□□□ -0.69
VPS50-204ENST00000438395 USHBP1Q8N6Y0 703 aa10.74□□□□□ -0.69
VPS50-204ENST00000438395 PCDH11XQ9BZA7 1347 aa10.74□□□□□ -0.69
VPS50-204ENST00000438395 PCDH11YQ9BZA8 1340 aa10.74□□□□□ -0.69
VPS50-204ENST00000438395 KAT6BQ8WYB5 2073 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 MYOM1P52179 1685 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 BTAF1O14981 1849 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 NBPF6Q5VWK0 638 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 SLC16A10Q8TF71 515 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 NBPF4Q96M43 638 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 SYT17Q9BSW7 474 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 POLR3GLQ9BT43 218 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 LRRC4BQ9NT99 713 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 CCNL1Q9UK58 526 aaPredicted RBP10.73□□□□□ -0.69
VPS50-204ENST00000438395 TAOK2Q9UL54 1235 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 TIMELESSQ9UNS1 1208 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 INSRP06213 1382 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 KIF24Q5T7B8 1368 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 NSD3Q9BZ95 1437 aa10.73□□□□□ -0.69
VPS50-204ENST00000438395 PCGF6Q9BYE7 350 aa10.72□□□□□ -0.69
VPS50-204ENST00000438395 KCNQ4P56696 695 aa10.71□□□□□ -0.69
VPS50-204ENST00000438395 PAPPAQ13219 1627 aa10.71□□□□□ -0.69
VPS50-204ENST00000438395 HSP90AB2PQ58FF8 381 aa10.71□□□□□ -0.69
VPS50-204ENST00000438395 MFRPQ9BY79 579 aa10.71□□□□□ -0.69
VPS50-204ENST00000438395 CLSPNQ9HAW4 1339 aa10.71□□□□□ -0.69
VPS50-204ENST00000438395 MAP3K5Q99683 1374 aa10.7□□□□□ -0.7
VPS50-204ENST00000438395 GPR162Q16538 588 aa10.7□□□□□ -0.7
VPS50-204ENST00000438395 MICALL2Q8IY33 904 aa10.7□□□□□ -0.7
VPS50-204ENST00000438395 FBXO22Q8NEZ5 403 aa10.7□□□□□ -0.7
VPS50-204ENST00000438395 PNPLA7Q6ZV29 1317 aa10.69□□□□□ -0.7
VPS50-204ENST00000438395 TMEM121BQ9BXQ6 578 aaPredicted RBP10.69□□□□□ -0.7
VPS50-204ENST00000438395 SPG7Q9UQ90 795 aa10.69□□□□□ -0.7
VPS50-204ENST00000438395 EMILIN1Q9Y6C2 1016 aa10.69□□□□□ -0.7
VPS50-204ENST00000438395 DOT1LQ8TEK3 1739 aa10.69□□□□□ -0.7
VPS50-204ENST00000438395 NSD2O96028 1365 aa10.68□□□□□ -0.7
VPS50-204ENST00000438395 PALLDQ8WX93 1383 aa10.68□□□□□ -0.7
VPS50-204ENST00000438395 MPRIPQ6WCQ1 1025 aa10.68□□□□□ -0.7
VPS50-204ENST00000438395 SMARCC1Q92922 1105 aaPredicted RBP10.68□□□□□ -0.7
VPS50-204ENST00000438395 CARD14Q9BXL6 1004 aa10.68□□□□□ -0.7
VPS50-204ENST00000438395 TMEM92Q6UXU6 159 aa10.67□□□□□ -0.7
VPS50-204ENST00000438395 FLAD1Q8NFF5 587 aa10.67□□□□□ -0.7
VPS50-204ENST00000438395 AK7Q96M32 723 aa10.67□□□□□ -0.7
VPS50-204ENST00000438395 KIF20BQ96Q89 1820 aa10.67□□□□□ -0.7
VPS50-204ENST00000438395 TNNT2P45379 298 aaPredicted RBP10.66□□□□□ -0.7
VPS50-204ENST00000438395 EIF4G2P78344 907 aaKnown RBP eCLIP10.66□□□□□ -0.7
VPS50-204ENST00000438395 MSL1Q68DK7 614 aa10.66□□□□□ -0.7
VPS50-204ENST00000438395 CYP27B1O15528 508 aa10.65□□□□□ -0.7
VPS50-204ENST00000438395 ZNF784Q8NCA9 323 aaPredicted RBP10.65□□□□□ -0.7
VPS50-204ENST00000438395 CCER1Q8TC90 406 aaPredicted RBP10.65□□□□□ -0.7
VPS50-204ENST00000438395 TMOD3Q9NYL9 352 aa10.65□□□□□ -0.7
VPS50-204ENST00000438395 WASHC2AQ641Q2 1341 aa10.64□□□□□ -0.71
VPS50-204ENST00000438395 MARVELD3Q96A59 401 aa10.64□□□□□ -0.71
VPS50-204ENST00000438395 RGPD2P0DJD1 1756 aa10.63□□□□□ -0.71
VPS50-204ENST00000438395 SNPHO15079 494 aa10.63□□□□□ -0.71
VPS50-204ENST00000438395 PHF14O94880 888 aa10.63□□□□□ -0.71
Retrieved 100 of 20,778 RNA–protein pairs in 11.8 ms