RNA–Protein interactions for RNA: ENST00000428014.1

SMC1A-203, Transcript of structural maintenance of chromosomes 1A, humanhuman

TSL 3

Gene SMC1A, Length 868 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC1A-203ENST00000428014 R3HDM1Q15032 1099 aaKnown RBP12.27□□□□□ -0.45
SMC1A-203ENST00000428014 C1orf141Q5JVX7 400 aa12.27□□□□□ -0.45
SMC1A-203ENST00000428014 AKT1S1Q96B36 256 aa12.27□□□□□ -0.45
SMC1A-203ENST00000428014 GAS2L2Q8NHY3 880 aa12.26□□□□□ -0.45
SMC1A-203ENST00000428014 PIGBQ92521 554 aa12.26□□□□□ -0.45
SMC1A-203ENST00000428014 TMOD3Q9NYL9 352 aa12.26□□□□□ -0.45
SMC1A-203ENST00000428014 PALLDQ8WX93 1383 aa12.26□□□□□ -0.45
SMC1A-203ENST00000428014 COL24A1Q17RW2 1714 aa12.25□□□□□ -0.45
SMC1A-203ENST00000428014 ZNF530Q6P9A1 599 aaPredicted RBP12.25□□□□□ -0.45
SMC1A-203ENST00000428014 SYTL4Q96C24 671 aaPredicted RBP12.25□□□□□ -0.45
SMC1A-203ENST00000428014 PNNQ9H307 717 aaKnown RBP12.25□□□□□ -0.45
SMC1A-203ENST00000428014 SPON1Q9HCB6 807 aa12.25□□□□□ -0.45
SMC1A-203ENST00000428014 ANO8Q9HCE9 1232 aaPredicted RBP12.25□□□□□ -0.45
SMC1A-203ENST00000428014 LRRC4BQ9NT99 713 aa12.25□□□□□ -0.45
SMC1A-203ENST00000428014 KDM6AO15550 1401 aaPredicted RBP12.25□□□□□ -0.45
SMC1A-203ENST00000428014 SCN11AQ9UI33 1791 aa12.25□□□□□ -0.45
SMC1A-203ENST00000428014 HTATSF1O43719 755 aaKnown RBP12.24□□□□□ -0.45
SMC1A-203ENST00000428014 AEBP1Q8IUX7 1158 aa12.24□□□□□ -0.45
SMC1A-203ENST00000428014 MTFR1LQ9H019 292 aa12.24□□□□□ -0.45
SMC1A-203ENST00000428014 CCNL1Q9UK58 526 aaPredicted RBP12.24□□□□□ -0.45
SMC1A-203ENST00000428014 TAF1LQ8IZX4 1826 aa12.23□□□□□ -0.45
SMC1A-203ENST00000428014 MAP3K5Q99683 1374 aa12.23□□□□□ -0.45
SMC1A-203ENST00000428014 MPRIPQ6WCQ1 1025 aa12.23□□□□□ -0.45
SMC1A-203ENST00000428014 C5P01031 1676 aa12.22□□□□□ -0.45
SMC1A-203ENST00000428014 CEMIPQ8WUJ3 1361 aa12.22□□□□□ -0.45
SMC1A-203ENST00000428014 LOC102724428A0A0B4J2F2 783 aa12.22□□□□□ -0.45
SMC1A-203ENST00000428014 PSDA5PKW4 1024 aaPredicted RBP12.22□□□□□ -0.45
SMC1A-203ENST00000428014 SIK1P57059 783 aa12.22□□□□□ -0.45
SMC1A-203ENST00000428014 RC3H1Q5TC82 1133 aaKnown RBP12.22□□□□□ -0.45
SMC1A-203ENST00000428014 RSPH6AQ9H0K4 717 aa12.22□□□□□ -0.45
SMC1A-203ENST00000428014 VSIG10Q8N0Z9 540 aa12.21□□□□□ -0.45
SMC1A-203ENST00000428014 SLC52A2Q9HAB3 445 aa12.21□□□□□ -0.45
SMC1A-203ENST00000428014 ATG3Q9NT62 314 aa12.21□□□□□ -0.45
SMC1A-203ENST00000428014 MYBBP1AQ9BQG0 1328 aaKnown RBP12.2□□□□□ -0.46
SMC1A-203ENST00000428014 SSFA2P28290 1259 aa12.2□□□□□ -0.46
SMC1A-203ENST00000428014 CABP4P57796 275 aa12.2□□□□□ -0.46
SMC1A-203ENST00000428014 SGIP1Q9BQI5 828 aa12.2□□□□□ -0.46
SMC1A-203ENST00000428014 CNTNAP4Q9C0A0 1308 aa12.19□□□□□ -0.46
SMC1A-203ENST00000428014 SPDYE2BA6NHP3 402 aa12.19□□□□□ -0.46
SMC1A-203ENST00000428014 GNAT3A8MTJ3 354 aa12.19□□□□□ -0.46
SMC1A-203ENST00000428014 RNMTO43148 476 aaKnown RBP12.19□□□□□ -0.46
SMC1A-203ENST00000428014 SPDYE6P0CI01 402 aa12.19□□□□□ -0.46
SMC1A-203ENST00000428014 MTHFSDQ2M296 383 aaKnown RBP12.19□□□□□ -0.46
SMC1A-203ENST00000428014 SPDYE2Q495Y8 402 aa12.19□□□□□ -0.46
SMC1A-203ENST00000428014 C4BP0C0L5 1744 aa12.19□□□□□ -0.46
SMC1A-203ENST00000428014 PNPLA7Q6ZV29 1317 aa12.18□□□□□ -0.46
SMC1A-203ENST00000428014 U2SURPO15042 1029 aaKnown RBP12.18□□□□□ -0.46
SMC1A-203ENST00000428014 HMOX1P09601 288 aa12.18□□□□□ -0.46
SMC1A-203ENST00000428014 ZNF827Q17R98 1081 aa12.18□□□□□ -0.46
SMC1A-203ENST00000428014 TFCP2L1Q9NZI6 479 aa12.18□□□□□ -0.46
SMC1A-203ENST00000428014 ASAP1Q9ULH1 1129 aa12.18□□□□□ -0.46
SMC1A-203ENST00000428014 NEFMP07197 916 aa12.17□□□□□ -0.46
SMC1A-203ENST00000428014 PTGER2P43116 358 aa12.17□□□□□ -0.46
SMC1A-203ENST00000428014 NFATC2IPQ8NCF5 419 aa12.17□□□□□ -0.46
SMC1A-203ENST00000428014 UBR3Q6ZT12 1888 aa12.17□□□□□ -0.46
SMC1A-203ENST00000428014 U2AF1L5P0DN76 240 aaPredicted RBP12.16□□□□□ -0.46
SMC1A-203ENST00000428014 PRKAR2BP31323 418 aa12.16□□□□□ -0.46
SMC1A-203ENST00000428014 U2AF1Q01081 240 aaKnown RBP eCLIP12.16□□□□□ -0.46
SMC1A-203ENST00000428014 DDX10Q13206 875 aaKnown RBP12.16□□□□□ -0.46
SMC1A-203ENST00000428014 TEX13AQ9BXU3 409 aaPredicted RBP12.16□□□□□ -0.46
SMC1A-203ENST00000428014 PRKRIP1Q9H875 184 aaPredicted RBP12.16□□□□□ -0.46
SMC1A-203ENST00000428014 COL5A3P25940 1745 aaPredicted RBP12.16□□□□□ -0.46
SMC1A-203ENST00000428014 UBR2Q8IWV8 1755 aa12.15□□□□□ -0.46
SMC1A-203ENST00000428014 ATP6V1AP38606 617 aa12.15□□□□□ -0.46
SMC1A-203ENST00000428014 PLEKHF1Q96S99 279 aa12.15□□□□□ -0.46
SMC1A-203ENST00000428014 BABAM1Q9NWV8 329 aa12.15□□□□□ -0.46
SMC1A-203ENST00000428014 VIRMAQ69YN4 1812 aaKnown RBP12.15□□□□□ -0.46
SMC1A-203ENST00000428014 TUBGCP6Q96RT7 1819 aa12.15□□□□□ -0.46
SMC1A-203ENST00000428014 SIPA1L3O60292 1781 aaPredicted RBP12.15□□□□□ -0.46
SMC1A-203ENST00000428014 RGL2O15211 777 aa12.14□□□□□ -0.47
SMC1A-203ENST00000428014 AK7Q96M32 723 aa12.14□□□□□ -0.47
SMC1A-203ENST00000428014 ZNF316A6NFI3 1004 aaPredicted RBP12.13□□□□□ -0.47
SMC1A-203ENST00000428014 RPS6KA4O75676 772 aa12.13□□□□□ -0.47
SMC1A-203ENST00000428014 POLD1P28340 1107 aa12.13□□□□□ -0.47
SMC1A-203ENST00000428014 TEFQ10587 303 aa12.13□□□□□ -0.47
SMC1A-203ENST00000428014 IL17REQ8NFR9 667 aa12.13□□□□□ -0.47
SMC1A-203ENST00000428014 PHACTR3Q96KR7 559 aa12.13□□□□□ -0.47
SMC1A-203ENST00000428014 LGR6Q9HBX8 967 aa12.13□□□□□ -0.47
SMC1A-203ENST00000428014 KCPQ6ZWJ8 1503 aa12.12□□□□□ -0.47
SMC1A-203ENST00000428014 ITPK1Q13572 414 aa12.12□□□□□ -0.47
SMC1A-203ENST00000428014 ZNF790Q6PG37 636 aa12.12□□□□□ -0.47
SMC1A-203ENST00000428014 LINC00116Q8NCU8 138 aa12.12□□□□□ -0.47
SMC1A-203ENST00000428014 PNISRQ8TF01 805 aaKnown RBP12.12□□□□□ -0.47
SMC1A-203ENST00000428014 RTF1Q92541 710 aaKnown RBP12.12□□□□□ -0.47
SMC1A-203ENST00000428014 SLC4A9Q96Q91 983 aa12.12□□□□□ -0.47
SMC1A-203ENST00000428014 RTCBQ9Y3I0 505 aaKnown RBP12.12□□□□□ -0.47
SMC1A-203ENST00000428014 LMOD3Q0VAK6 560 aa12.11□□□□□ -0.47
SMC1A-203ENST00000428014 COL23A1Q86Y22 540 aaPredicted RBP12.11□□□□□ -0.47
SMC1A-203ENST00000428014 SSUH2Q9Y2M2 353 aa12.11□□□□□ -0.47
SMC1A-203ENST00000428014 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP12.1□□□□□ -0.47
SMC1A-203ENST00000428014 NFE2L2Q16236 605 aa12.1□□□□□ -0.47
SMC1A-203ENST00000428014 TTC5Q8N0Z6 440 aa12.1□□□□□ -0.47
SMC1A-203ENST00000428014 NLGN1Q8N2Q7 840 aa12.1□□□□□ -0.47
SMC1A-203ENST00000428014 ARXQ96QS3 562 aa12.1□□□□□ -0.47
SMC1A-203ENST00000428014 PDGFDQ9GZP0 370 aaPredicted RBP12.1□□□□□ -0.47
SMC1A-203ENST00000428014 PPP1R1BQ9UD71 204 aaPredicted RBP12.1□□□□□ -0.47
SMC1A-203ENST00000428014 TJP1Q07157 1748 aa12.1□□□□□ -0.47
SMC1A-203ENST00000428014 HEG1Q9ULI3 1381 aa12.09□□□□□ -0.47
SMC1A-203ENST00000428014 MYH14Q7Z406 1995 aaKnown RBP12.09□□□□□ -0.47
SMC1A-203ENST00000428014 ZBTB7AO95365 584 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 860.2 ms