RNA–Protein interactions for RNA: ENST00000423575.5

LINC00539-202, long intergenic non-protein coding RNA 539, humanhuman

TSL 3 BASIC

Gene LINC00539, Length 699 nt, Biotype lincRNA.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LINC00539-202ENST00000423575 NGEFQ8N5V2 710 aa15.86■□□□□ 0.13
LINC00539-202ENST00000423575 ASAP1Q9ULH1 1129 aa15.86■□□□□ 0.13
LINC00539-202ENST00000423575 BTAF1O14981 1849 aa15.86■□□□□ 0.13
LINC00539-202ENST00000423575 SIPA1L3O60292 1781 aaPredicted RBP15.85■□□□□ 0.13
LINC00539-202ENST00000423575 VIRMAQ69YN4 1812 aaKnown RBP15.85■□□□□ 0.13
LINC00539-202ENST00000423575 APBA3O96018 575 aa15.85■□□□□ 0.13
LINC00539-202ENST00000423575 ATG3Q9NT62 314 aa15.85■□□□□ 0.13
LINC00539-202ENST00000423575 ZNF521Q96K83 1311 aa15.85■□□□□ 0.13
LINC00539-202ENST00000423575 KAT6BQ8WYB5 2073 aa15.85■□□□□ 0.13
LINC00539-202ENST00000423575 HNRNPUQ00839 825 aaKnown RBP eCLIP15.84■□□□□ 0.13
LINC00539-202ENST00000423575 SLC39A6Q13433 755 aa15.84■□□□□ 0.13
LINC00539-202ENST00000423575 TAF7Q15545 349 aaPredicted RBP15.84■□□□□ 0.13
LINC00539-202ENST00000423575 PALLDQ8WX93 1383 aa15.84■□□□□ 0.13
LINC00539-202ENST00000423575 PAPPAQ13219 1627 aa15.83■□□□□ 0.13
LINC00539-202ENST00000423575 BTBD11A6QL63 1104 aa15.83■□□□□ 0.12
LINC00539-202ENST00000423575 KCNQ3O43525 872 aa15.83■□□□□ 0.12
LINC00539-202ENST00000423575 SF3B2Q13435 895 aaKnown RBP15.83■□□□□ 0.12
LINC00539-202ENST00000423575 CCDC125Q86Z20 511 aa15.83■□□□□ 0.12
LINC00539-202ENST00000423575 MIS18AQ9NYP9 233 aa15.83■□□□□ 0.12
LINC00539-202ENST00000423575 CALD1Q05682 793 aaKnown RBP15.82■□□□□ 0.12
LINC00539-202ENST00000423575 DEFB132Q7Z7B7 95 aa15.82■□□□□ 0.12
LINC00539-202ENST00000423575 SMARCC1Q92922 1105 aaPredicted RBP15.82■□□□□ 0.12
LINC00539-202ENST00000423575 CHL1O00533 1208 aa15.81■□□□□ 0.12
LINC00539-202ENST00000423575 PLSCR1O15162 318 aa15.81■□□□□ 0.12
LINC00539-202ENST00000423575 ZNF853P0CG23 659 aa15.81■□□□□ 0.12
LINC00539-202ENST00000423575 BAG6P46379 1132 aa15.81■□□□□ 0.12
LINC00539-202ENST00000423575 ZNF790Q6PG37 636 aa15.81■□□□□ 0.12
LINC00539-202ENST00000423575 KCPQ6ZWJ8 1503 aa15.81■□□□□ 0.12
LINC00539-202ENST00000423575 WDR63Q8IWG1 891 aa15.81■□□□□ 0.12
LINC00539-202ENST00000423575 IFT57Q9NWB7 429 aa15.81■□□□□ 0.12
LINC00539-202ENST00000423575 TSPYL4Q9UJ04 414 aa15.81■□□□□ 0.12
LINC00539-202ENST00000423575 LAS1LQ9Y4W2 734 aaKnown RBP15.81■□□□□ 0.12
LINC00539-202ENST00000423575 IL16Q14005 1332 aa15.8■□□□□ 0.12
LINC00539-202ENST00000423575 EN1Q05925 392 aaPredicted RBP15.8■□□□□ 0.12
LINC00539-202ENST00000423575 CFAP44Q96MT7 982 aa15.8■□□□□ 0.12
LINC00539-202ENST00000423575 PTCD1O75127 700 aaKnown RBP15.79■□□□□ 0.12
LINC00539-202ENST00000423575 GNAI1P63096 354 aa15.79■□□□□ 0.12
LINC00539-202ENST00000423575 TTC5Q8N0Z6 440 aa15.79■□□□□ 0.12
LINC00539-202ENST00000423575 SLC4A9Q96Q91 983 aa15.79■□□□□ 0.12
LINC00539-202ENST00000423575 CAMKK2Q96RR4 588 aa15.79■□□□□ 0.12
LINC00539-202ENST00000423575 SPINK5Q9NQ38 1064 aaPredicted RBP15.79■□□□□ 0.12
LINC00539-202ENST00000423575 MBIPQ9NS73 344 aa15.79■□□□□ 0.12
LINC00539-202ENST00000423575 BABAM1Q9NWV8 329 aa15.79■□□□□ 0.12
LINC00539-202ENST00000423575 KDM3BQ7LBC6 1761 aa15.78■□□□□ 0.12
LINC00539-202ENST00000423575 LOC102724428A0A0B4J2F2 783 aa15.78■□□□□ 0.12
LINC00539-202ENST00000423575 SIK1P57059 783 aa15.78■□□□□ 0.12
LINC00539-202ENST00000423575 EZH2Q15910 746 aaKnown RBP15.78■□□□□ 0.12
LINC00539-202ENST00000423575 TXNRD1Q16881 649 aa15.78■□□□□ 0.12
LINC00539-202ENST00000423575 PROM2Q8N271 834 aa15.78■□□□□ 0.12
LINC00539-202ENST00000423575 ZNF496Q96IT1 587 aaPredicted RBP15.78■□□□□ 0.12
LINC00539-202ENST00000423575 RGPD3A6NKT7 1758 aaPredicted RBP15.77■□□□□ 0.12
LINC00539-202ENST00000423575 RGPD4Q7Z3J3 1758 aa15.77■□□□□ 0.12
LINC00539-202ENST00000423575 UBR2Q8IWV8 1755 aa15.77■□□□□ 0.12
LINC00539-202ENST00000423575 KCNQ4P56696 695 aa15.77■□□□□ 0.12
LINC00539-202ENST00000423575 EIF4A1P60842 406 aaKnown RBP15.77■□□□□ 0.12
LINC00539-202ENST00000423575 TSR2Q969E8 191 aaKnown RBP15.77■□□□□ 0.12
LINC00539-202ENST00000423575 RBM42Q9BTD8 480 aaKnown RBP15.77■□□□□ 0.12
LINC00539-202ENST00000423575 LRRC4BQ9NT99 713 aa15.77■□□□□ 0.12
LINC00539-202ENST00000423575 CCNL1Q9UK58 526 aaPredicted RBP15.77■□□□□ 0.12
LINC00539-202ENST00000423575 LY75O60449 1722 aa15.77■□□□□ 0.11
LINC00539-202ENST00000423575 ZBED9Q6R2W3 1325 aa15.76■□□□□ 0.11
LINC00539-202ENST00000423575 GOLGA2Q08379 1002 aa15.76■□□□□ 0.11
LINC00539-202ENST00000423575 FMNL2Q96PY5 1086 aa15.76■□□□□ 0.11
LINC00539-202ENST00000423575 HEG1Q9ULI3 1381 aa15.75■□□□□ 0.11
LINC00539-202ENST00000423575 FANCIQ9NVI1 1328 aa15.75■□□□□ 0.11
LINC00539-202ENST00000423575 ITPK1Q13572 414 aa15.75■□□□□ 0.11
LINC00539-202ENST00000423575 CDCA7LQ96GN5 454 aa15.75■□□□□ 0.11
LINC00539-202ENST00000423575 SOCS7O14512 581 aa15.74■□□□□ 0.11
LINC00539-202ENST00000423575 KRT24Q2M2I5 525 aa15.74■□□□□ 0.11
LINC00539-202ENST00000423575 SLC27A3Q5K4L6 730 aa15.74■□□□□ 0.11
LINC00539-202ENST00000423575 YTHDC1Q96MU7 727 aaKnown RBP15.74■□□□□ 0.11
LINC00539-202ENST00000423575 PRAMEF22A3QJZ6 481 aa15.73■□□□□ 0.11
LINC00539-202ENST00000423575 ATP6V1AP38606 617 aa15.73■□□□□ 0.11
LINC00539-202ENST00000423575 SLFN5Q08AF3 891 aa15.73■□□□□ 0.11
LINC00539-202ENST00000423575 DNAJC10Q8IXB1 793 aa15.73■□□□□ 0.11
LINC00539-202ENST00000423575 VSIG10Q8N0Z9 540 aa15.73■□□□□ 0.11
LINC00539-202ENST00000423575 LINC00116Q8NCU8 138 aa15.73■□□□□ 0.11
LINC00539-202ENST00000423575 RREB1Q92766 1687 aa15.73■□□□□ 0.11
LINC00539-202ENST00000423575 CICQ96RK0 1608 aaPredicted RBP15.72■□□□□ 0.11
LINC00539-202ENST00000423575 TJP1Q07157 1748 aa15.72■□□□□ 0.11
LINC00539-202ENST00000423575 E9PSI1 815 aa15.72■□□□□ 0.11
LINC00539-202ENST00000423575 GIGYF1O75420 1035 aaPredicted RBP15.72■□□□□ 0.11
LINC00539-202ENST00000423575 MYH16Q9H6N6 1097 aa15.72■□□□□ 0.11
LINC00539-202ENST00000423575 ZNF831Q5JPB2 1677 aa15.72■□□□□ 0.11
LINC00539-202ENST00000423575 SNRPA1P09661 255 aaKnown RBP15.71■□□□□ 0.11
LINC00539-202ENST00000423575 TRMT2AQ8IZ69 625 aaKnown RBP15.7■□□□□ 0.1
LINC00539-202ENST00000423575 C8orf58Q8NAV2 365 aa15.7■□□□□ 0.1
LINC00539-202ENST00000423575 NUP188Q5SRE5 1749 aa15.7■□□□□ 0.1
LINC00539-202ENST00000423575 CYP19A1P11511 503 aaPredicted RBP15.69■□□□□ 0.1
LINC00539-202ENST00000423575 DUSP27Q5VZP5 1158 aa15.69■□□□□ 0.1
LINC00539-202ENST00000423575 TSPYL6Q8N831 410 aa15.69■□□□□ 0.1
LINC00539-202ENST00000423575 ANO8Q9HCE9 1232 aaPredicted RBP15.69■□□□□ 0.1
LINC00539-202ENST00000423575 USP16Q9Y5T5 823 aa15.69■□□□□ 0.1
LINC00539-202ENST00000423575 C5P01031 1676 aa15.69■□□□□ 0.1
LINC00539-202ENST00000423575 ELL2O00472 640 aaPredicted RBP15.68■□□□□ 0.1
LINC00539-202ENST00000423575 EXOSC9Q06265 439 aaKnown RBP15.68■□□□□ 0.1
LINC00539-202ENST00000423575 ZNF827Q17R98 1081 aa15.68■□□□□ 0.1
LINC00539-202ENST00000423575 COL5A3P25940 1745 aaPredicted RBP15.68■□□□□ 0.1
LINC00539-202ENST00000423575 CNTNAP4Q9C0A0 1308 aa15.68■□□□□ 0.1
LINC00539-202ENST00000423575 HOXB7P09629 217 aa15.67■□□□□ 0.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.9 ms