RNA–Protein interactions for RNA: ENST00000418258.5

PTCH1-205, Transcript of patched 1, humanhuman

TSL 5 BASIC

Gene PTCH1, Length 7,815 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-205ENST00000418258 UBA5Q9GZZ9 404 aa13.13□□□□□ -0.31
PTCH1-205ENST00000418258 DHX8Q14562 1220 aaKnown RBP13.12□□□□□ -0.31
PTCH1-205ENST00000418258 SLF2Q8IX21 1173 aa13.12□□□□□ -0.31
PTCH1-205ENST00000418258 DDX11Q96FC9 970 aa13.12□□□□□ -0.31
PTCH1-205ENST00000418258 IQCEQ6IPM2 695 aa13.12□□□□□ -0.31
PTCH1-205ENST00000418258 FAM193AP78312 1265 aa13.12□□□□□ -0.31
PTCH1-205ENST00000418258 RANBP6O60518 1105 aaKnown RBP13.11□□□□□ -0.31
PTCH1-205ENST00000418258 LARP1Q6PKG0 1096 aaKnown RBP13.11□□□□□ -0.31
PTCH1-205ENST00000418258 NUTM1Q86Y26 1132 aa13.11□□□□□ -0.31
PTCH1-205ENST00000418258 USHBP1Q8N6Y0 703 aa13.11□□□□□ -0.31
PTCH1-205ENST00000418258 CCDC61Q9Y6R9 512 aa13.11□□□□□ -0.31
PTCH1-205ENST00000418258 SNAPC4Q5SXM2 1469 aa13.11□□□□□ -0.31
PTCH1-205ENST00000418258 KIAA1107Q9UPP5 1409 aa13.11□□□□□ -0.31
PTCH1-205ENST00000418258 SLC5A1P13866 664 aa13.11□□□□□ -0.31
PTCH1-205ENST00000418258 MVPQ14764 893 aaKnown RBP13.11□□□□□ -0.31
PTCH1-205ENST00000418258 FEZ1Q99689 392 aa13.11□□□□□ -0.31
PTCH1-205ENST00000418258 C6orf229H3BNL8 230 aa13.11□□□□□ -0.31
PTCH1-205ENST00000418258 K7ELQ4 463 aaPredicted RBP13.11□□□□□ -0.31
PTCH1-205ENST00000418258 CCDC112Q8NEF3 446 aa13.11□□□□□ -0.31
PTCH1-205ENST00000418258 TRMT112Q9UI30 125 aaKnown RBP13.11□□□□□ -0.31
PTCH1-205ENST00000418258 MAP3K12Q12852 859 aa13.11□□□□□ -0.31
PTCH1-205ENST00000418258 CETN2P41208 172 aa13.1□□□□□ -0.31
PTCH1-205ENST00000418258 MCM10Q7L590 875 aa13.1□□□□□ -0.31
PTCH1-205ENST00000418258 WAPLQ7Z5K2 1190 aa13.1□□□□□ -0.31
PTCH1-205ENST00000418258 NSD3Q9BZ95 1437 aa13.1□□□□□ -0.31
PTCH1-205ENST00000418258 FANCIQ9NVI1 1328 aa13.1□□□□□ -0.31
PTCH1-205ENST00000418258 EHMT1Q9H9B1 1298 aa13.1□□□□□ -0.31
PTCH1-205ENST00000418258 DUSP27Q5VZP5 1158 aa13.1□□□□□ -0.31
PTCH1-205ENST00000418258 IFT140Q96RY7 1462 aa13.1□□□□□ -0.31
PTCH1-205ENST00000418258 EPB41L2O43491 1005 aaKnown RBP13.09□□□□□ -0.31
PTCH1-205ENST00000418258 LIG1P18858 919 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 HSP90AB3PQ58FF7 597 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 IQCA1Q86XH1 822 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 FCHSD2O94868 740 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 NFE2L2Q16236 605 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 TSG101Q99816 390 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 EXOC5O00471 708 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 BOLA2Q9H3K6 86 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 CA8P35219 290 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 ZNF622Q969S3 477 aaKnown RBP eCLIP13.09□□□□□ -0.31
PTCH1-205ENST00000418258 EFCAB5A4FU69 1503 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 TAF4BQ92750 862 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 KIF1BPQ96EK5 621 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 RPGRIP1LQ68CZ1 1315 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 UPF3BQ9BZI7 483 aaKnown RBP13.09□□□□□ -0.31
PTCH1-205ENST00000418258 EXOC6BQ9Y2D4 811 aa13.09□□□□□ -0.31
PTCH1-205ENST00000418258 AMOTQ4VCS5 1084 aa13.08□□□□□ -0.31
PTCH1-205ENST00000418258 CCDC196A0A1B0GTZ2 297 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 CTCFLQ8NI51 663 aaPredicted RBP13.08□□□□□ -0.32
PTCH1-205ENST00000418258 ZSCAN31Q96LW9 406 aaPredicted RBP13.08□□□□□ -0.32
PTCH1-205ENST00000418258 NESP48681 1621 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 KIF14Q15058 1648 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 GOLGA6L7A0A1B0GV03 622 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 SMTNL1A8MU46 457 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 KIAA0754O94854 1291 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 GRM1Q13255 1194 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 FAM135AQ9P2D6 1515 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 RFC4P35249 363 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 TRMT1LQ7Z2T5 733 aaKnown RBP13.08□□□□□ -0.32
PTCH1-205ENST00000418258 CCDC82Q8N4S0 544 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 RAB34Q9BZG1 259 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 DHX37Q8IY37 1157 aaKnown RBP13.08□□□□□ -0.32
PTCH1-205ENST00000418258 FOXO3O43524 673 aa13.08□□□□□ -0.32
PTCH1-205ENST00000418258 GPTP24298 496 aa13.07□□□□□ -0.32
PTCH1-205ENST00000418258 TAF3Q5VWG9 929 aa13.07□□□□□ -0.32
PTCH1-205ENST00000418258 MPNDQ8N594 471 aa13.07□□□□□ -0.32
PTCH1-205ENST00000418258 TAF7Q15545 349 aaPredicted RBP13.07□□□□□ -0.32
PTCH1-205ENST00000418258 ANKRD30BQ9BXX2 1392 aa13.07□□□□□ -0.32
PTCH1-205ENST00000418258 RAB11FIP3O75154 756 aa13.07□□□□□ -0.32
PTCH1-205ENST00000418258 TMEM266Q2M3C6 531 aa13.07□□□□□ -0.32
PTCH1-205ENST00000418258 NUP62CLQ9H1M0 184 aa13.07□□□□□ -0.32
PTCH1-205ENST00000418258 ANKRD18BA2A2Z9 1011 aa13.07□□□□□ -0.32
PTCH1-205ENST00000418258 SLC4A8Q2Y0W8 1093 aa13.07□□□□□ -0.32
PTCH1-205ENST00000418258 PPP6R1Q9UPN7 881 aa13.07□□□□□ -0.32
PTCH1-205ENST00000418258 LRPPRCP42704 1394 aaKnown RBP13.07□□□□□ -0.32
PTCH1-205ENST00000418258 KLHL10Q6JEL2 608 aa13.07□□□□□ -0.32
PTCH1-205ENST00000418258 MYO1BO43795 1136 aa13.06□□□□□ -0.32
PTCH1-205ENST00000418258 TMPOP42166 694 aaKnown RBP13.06□□□□□ -0.32
PTCH1-205ENST00000418258 SLC12A7Q9Y666 1083 aa13.06□□□□□ -0.32
PTCH1-205ENST00000418258 CACNA2D4Q7Z3S7 1137 aa13.06□□□□□ -0.32
PTCH1-205ENST00000418258 ZNF213O14771 459 aa13.06□□□□□ -0.32
PTCH1-205ENST00000418258 CFAP100Q494V2 611 aa13.06□□□□□ -0.32
PTCH1-205ENST00000418258 FERMT2Q96AC1 680 aa13.06□□□□□ -0.32
PTCH1-205ENST00000418258 ST5P78524 1137 aa13.06□□□□□ -0.32
PTCH1-205ENST00000418258 DDX46Q7L014 1031 aaKnown RBP13.05□□□□□ -0.32
PTCH1-205ENST00000418258 SAMM50Q9Y512 469 aa13.05□□□□□ -0.32
PTCH1-205ENST00000418258 FKBP15Q5T1M5 1219 aa13.05□□□□□ -0.32
PTCH1-205ENST00000418258 CCDC91Q7Z6B0 441 aa13.05□□□□□ -0.32
PTCH1-205ENST00000418258 CATIPQ7Z7H3 387 aa13.05□□□□□ -0.32
PTCH1-205ENST00000418258 ERLIN1O75477 346 aa13.05□□□□□ -0.32
PTCH1-205ENST00000418258 EIF3JO75822 258 aaKnown RBP13.05□□□□□ -0.32
PTCH1-205ENST00000418258 SPA17Q15506 151 aa13.05□□□□□ -0.32
PTCH1-205ENST00000418258 AKNAQ7Z591 1439 aa13.05□□□□□ -0.32
PTCH1-205ENST00000418258 GLRX3O76003 335 aaKnown RBP13.04□□□□□ -0.32
PTCH1-205ENST00000418258 MTERF4Q7Z6M4 381 aaKnown RBP13.04□□□□□ -0.32
PTCH1-205ENST00000418258 FGFR1OPO95684 399 aaKnown RBP13.04□□□□□ -0.32
PTCH1-205ENST00000418258 CAMK4Q16566 473 aa13.04□□□□□ -0.32
PTCH1-205ENST00000418258 CCDC148Q8NFR7 591 aa13.04□□□□□ -0.32
PTCH1-205ENST00000418258 NLRP5P59047 1200 aa13.04□□□□□ -0.32
PTCH1-205ENST00000418258 VPS36Q86VN1 386 aa13.04□□□□□ -0.32
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms