RNA–Protein interactions for RNA: ENST00000417545.4

TRIM48-201, Transcript of tripartite motif containing 48, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene TRIM48, Length 1,445 nt, Biotype protein coding.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM48-201ENST00000417545 DCTN1Q14203 1278 aa11.05□□□□□ -0.64
TRIM48-201ENST00000417545 NHSQ6T4R5 1651 aa11.05□□□□□ -0.64
TRIM48-201ENST00000417545 SF3B2Q13435 895 aaKnown RBP11.04□□□□□ -0.64
TRIM48-201ENST00000417545 KDM6AO15550 1401 aaPredicted RBP11.04□□□□□ -0.64
TRIM48-201ENST00000417545 SBF2Q86WG5 1849 aa11.04□□□□□ -0.64
TRIM48-201ENST00000417545 ERVV-2B6SEH9 535 aa11.03□□□□□ -0.64
TRIM48-201ENST00000417545 NKX1-1Q15270 411 aaPredicted RBP11.03□□□□□ -0.64
TRIM48-201ENST00000417545 TTC5Q8N0Z6 440 aa11.03□□□□□ -0.64
TRIM48-201ENST00000417545 THUMPD2Q9BTF0 503 aaKnown RBP11.03□□□□□ -0.64
TRIM48-201ENST00000417545 LGR6Q9HBX8 967 aa11.03□□□□□ -0.64
TRIM48-201ENST00000417545 CCDC27Q2M243 656 aa11.02□□□□□ -0.64
TRIM48-201ENST00000417545 SLC52A2Q9HAB3 445 aa11.02□□□□□ -0.64
TRIM48-201ENST00000417545 ADAMTS7Q9UKP4 1686 aa11.02□□□□□ -0.65
TRIM48-201ENST00000417545 BTBD11A6QL63 1104 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 PRIM1P49642 420 aaKnown RBP11.01□□□□□ -0.65
TRIM48-201ENST00000417545 GNAI1P63096 354 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 WWC1Q8IX03 1113 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 ZNF219Q9P2Y4 722 aaPredicted RBP11.01□□□□□ -0.65
TRIM48-201ENST00000417545 TSPYL4Q9UJ04 414 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 TRIM35Q9UPQ4 493 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 BTAF1O14981 1849 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 ZBED9Q6R2W3 1325 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 SIPA1L3O60292 1781 aaPredicted RBP11.01□□□□□ -0.65
TRIM48-201ENST00000417545 MRC1P22897 1456 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 TRIM37O94972 964 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 GOLGA2Q08379 1002 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 TAF7Q15545 349 aaPredicted RBP11.01□□□□□ -0.65
TRIM48-201ENST00000417545 WDR63Q8IWG1 891 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 NFATC2IPQ8NCF5 419 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 IL17REQ8NFR9 667 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 MYH16Q9H6N6 1097 aa11.01□□□□□ -0.65
TRIM48-201ENST00000417545 CEMIPQ8WUJ3 1361 aa11□□□□□ -0.65
TRIM48-201ENST00000417545 SLC4A2P04920 1241 aa11□□□□□ -0.65
TRIM48-201ENST00000417545 BCL9O00512 1426 aa10.99□□□□□ -0.65
TRIM48-201ENST00000417545 SMARCC1Q92922 1105 aaPredicted RBP10.99□□□□□ -0.65
TRIM48-201ENST00000417545 BCL11BQ9C0K0 894 aaPredicted RBP10.99□□□□□ -0.65
TRIM48-201ENST00000417545 IFT57Q9NWB7 429 aa10.99□□□□□ -0.65
TRIM48-201ENST00000417545 IL16Q14005 1332 aa10.99□□□□□ -0.65
TRIM48-201ENST00000417545 KDM3BQ7LBC6 1761 aa10.98□□□□□ -0.65
TRIM48-201ENST00000417545 E9PSI1 815 aa10.98□□□□□ -0.65
TRIM48-201ENST00000417545 KCNQ2O43526 872 aa10.98□□□□□ -0.65
TRIM48-201ENST00000417545 CFAP44Q96MT7 982 aa10.98□□□□□ -0.65
TRIM48-201ENST00000417545 RBM42Q9BTD8 480 aaKnown RBP10.98□□□□□ -0.65
TRIM48-201ENST00000417545 PAPPAQ13219 1627 aa10.97□□□□□ -0.65
TRIM48-201ENST00000417545 TNS1Q9HBL0 1735 aaKnown RBP10.97□□□□□ -0.65
TRIM48-201ENST00000417545 APBA3O96018 575 aa10.97□□□□□ -0.65
TRIM48-201ENST00000417545 SLC39A6Q13433 755 aa10.97□□□□□ -0.65
TRIM48-201ENST00000417545 PIGBQ92521 554 aa10.97□□□□□ -0.65
TRIM48-201ENST00000417545 BABAM1Q9NWV8 329 aa10.97□□□□□ -0.65
TRIM48-201ENST00000417545 MIS18AQ9NYP9 233 aa10.97□□□□□ -0.65
TRIM48-201ENST00000417545 PTCD1O75127 700 aaKnown RBP10.96□□□□□ -0.65
TRIM48-201ENST00000417545 BAG6P46379 1132 aa10.96□□□□□ -0.65
TRIM48-201ENST00000417545 FMNL2Q96PY5 1086 aa10.96□□□□□ -0.65
TRIM48-201ENST00000417545 PALLDQ8WX93 1383 aa10.96□□□□□ -0.65
TRIM48-201ENST00000417545 ZNF790Q6PG37 636 aa10.95□□□□□ -0.66
TRIM48-201ENST00000417545 TSR2Q969E8 191 aaKnown RBP10.95□□□□□ -0.66
TRIM48-201ENST00000417545 MBIPQ9NS73 344 aa10.95□□□□□ -0.66
TRIM48-201ENST00000417545 UBR2Q8IWV8 1755 aa10.95□□□□□ -0.66
TRIM48-201ENST00000417545 ZNF521Q96K83 1311 aa10.94□□□□□ -0.66
TRIM48-201ENST00000417545 FANCIQ9NVI1 1328 aa10.94□□□□□ -0.66
TRIM48-201ENST00000417545 CHL1O00533 1208 aa10.94□□□□□ -0.66
TRIM48-201ENST00000417545 ATG3Q9NT62 314 aa10.94□□□□□ -0.66
TRIM48-201ENST00000417545 ASAP1Q9ULH1 1129 aa10.94□□□□□ -0.66
TRIM48-201ENST00000417545 HMGB2P26583 209 aaKnown RBP10.93□□□□□ -0.66
TRIM48-201ENST00000417545 CCDC125Q86Z20 511 aa10.93□□□□□ -0.66
TRIM48-201ENST00000417545 LAMB4A4D0S4 1761 aa10.93□□□□□ -0.66
TRIM48-201ENST00000417545 LY75O60449 1722 aa10.93□□□□□ -0.66
TRIM48-201ENST00000417545 RGPD3A6NKT7 1758 aaPredicted RBP10.93□□□□□ -0.66
TRIM48-201ENST00000417545 RGPD4Q7Z3J3 1758 aa10.93□□□□□ -0.66
TRIM48-201ENST00000417545 ATP6V1AP38606 617 aa10.92□□□□□ -0.66
TRIM48-201ENST00000417545 SLFN5Q08AF3 891 aa10.92□□□□□ -0.66
TRIM48-201ENST00000417545 NPM2Q86SE8 214 aaKnown RBP10.92□□□□□ -0.66
TRIM48-201ENST00000417545 CDCA7LQ96GN5 454 aa10.92□□□□□ -0.66
TRIM48-201ENST00000417545 CHMP4AQ9BY43 222 aa10.92□□□□□ -0.66
TRIM48-201ENST00000417545 CCNL1Q9UK58 526 aaPredicted RBP10.92□□□□□ -0.66
TRIM48-201ENST00000417545 HEG1Q9ULI3 1381 aa10.92□□□□□ -0.66
TRIM48-201ENST00000417545 KCNQ3O43525 872 aa10.92□□□□□ -0.66
TRIM48-201ENST00000417545 SNRPA1P09661 255 aaKnown RBP10.92□□□□□ -0.66
TRIM48-201ENST00000417545 ZNF853P0CG23 659 aa10.92□□□□□ -0.66
TRIM48-201ENST00000417545 PTF1AQ7RTS3 328 aa10.92□□□□□ -0.66
TRIM48-201ENST00000417545 TEX13AQ9BXU3 409 aaPredicted RBP10.92□□□□□ -0.66
TRIM48-201ENST00000417545 KCPQ6ZWJ8 1503 aa10.91□□□□□ -0.66
TRIM48-201ENST00000417545 C5P01031 1676 aa10.91□□□□□ -0.66
TRIM48-201ENST00000417545 LOC102724428A0A0B4J2F2 783 aa10.91□□□□□ -0.66
TRIM48-201ENST00000417545 ELL2O00472 640 aaPredicted RBP10.91□□□□□ -0.66
TRIM48-201ENST00000417545 SIK1P57059 783 aa10.91□□□□□ -0.66
TRIM48-201ENST00000417545 EIF4A1P60842 406 aaKnown RBP10.91□□□□□ -0.66
TRIM48-201ENST00000417545 EXOSC9Q06265 439 aaKnown RBP10.91□□□□□ -0.66
TRIM48-201ENST00000417545 TWISTNBQ3B726 338 aaPredicted RBP10.91□□□□□ -0.66
TRIM48-201ENST00000417545 ZNF496Q96IT1 587 aaPredicted RBP10.91□□□□□ -0.66
TRIM48-201ENST00000417545 TJP1Q07157 1748 aa10.9□□□□□ -0.66
TRIM48-201ENST00000417545 STARD3NLO95772 234 aa10.9□□□□□ -0.66
TRIM48-201ENST00000417545 EIF2S2P20042 333 aaKnown RBP10.9□□□□□ -0.66
TRIM48-201ENST00000417545 SLC27A3Q5K4L6 730 aa10.9□□□□□ -0.66
TRIM48-201ENST00000417545 HDGFL1Q5TGJ6 251 aa10.9□□□□□ -0.66
TRIM48-201ENST00000417545 DUSP27Q5VZP5 1158 aa10.9□□□□□ -0.66
TRIM48-201ENST00000417545 ILDR2Q71H61 639 aa10.9□□□□□ -0.66
TRIM48-201ENST00000417545 VSIG10Q8N0Z9 540 aa10.9□□□□□ -0.66
TRIM48-201ENST00000417545 ZNF831Q5JPB2 1677 aa10.89□□□□□ -0.67
TRIM48-201ENST00000417545 PLSCR1O15162 318 aa10.89□□□□□ -0.67
Retrieved 100 of 20,778 RNA–protein pairs in 20.2 ms