RNA–Protein interactions for RNA: ENST00000409558.8

VPS54-203, Transcript of VPS54, GARP complex subunit, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene VPS54, Length 4,337 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS54-203ENST00000409558 GBP4Q96PP9 640 aa16.44■□□□□ 0.22
VPS54-203ENST00000409558 PTCH1Q13635 1447 aa16.44■□□□□ 0.22
VPS54-203ENST00000409558 BTBD11A6QL63 1104 aa16.44■□□□□ 0.22
VPS54-203ENST00000409558 DLC1Q96QB1 1528 aa16.43■□□□□ 0.22
VPS54-203ENST00000409558 NLRP2Q9NX02 1062 aa16.43■□□□□ 0.22
VPS54-203ENST00000409558 CCT4P50991 539 aaKnown RBP16.43■□□□□ 0.22
VPS54-203ENST00000409558 ZNF330Q9Y3S2 320 aaPredicted RBP16.43■□□□□ 0.22
VPS54-203ENST00000409558 PPP1R42Q7Z4L9 355 aa16.43■□□□□ 0.22
VPS54-203ENST00000409558 PA2G4Q9UQ80 394 aaKnown RBP16.43■□□□□ 0.22
VPS54-203ENST00000409558 SPATA31D1Q6ZQQ2 1576 aa16.42■□□□□ 0.22
VPS54-203ENST00000409558 USP26Q9BXU7 913 aa16.42■□□□□ 0.22
VPS54-203ENST00000409558 KIF20BQ96Q89 1820 aa16.42■□□□□ 0.22
VPS54-203ENST00000409558 BRPF1P55201 1214 aaPredicted RBP16.42■□□□□ 0.22
VPS54-203ENST00000409558 TAOK2Q9UL54 1235 aa16.42■□□□□ 0.22
VPS54-203ENST00000409558 CHRNA2Q15822 529 aa16.42■□□□□ 0.22
VPS54-203ENST00000409558 CWF19L2Q2TBE0 894 aaKnown RBP16.42■□□□□ 0.22
VPS54-203ENST00000409558 ANKLE2Q86XL3 938 aa16.42■□□□□ 0.22
VPS54-203ENST00000409558 PTPRCP08575 1304 aa16.42■□□□□ 0.22
VPS54-203ENST00000409558 MX1P20591 662 aa16.41■□□□□ 0.22
VPS54-203ENST00000409558 C9orf78Q9NZ63 289 aaPredicted RBP16.41■□□□□ 0.22
VPS54-203ENST00000409558 C1orf141Q5JVX7 400 aa16.41■□□□□ 0.22
VPS54-203ENST00000409558 PALD1Q9ULE6 856 aa16.41■□□□□ 0.22
VPS54-203ENST00000409558 GDPD2Q9HCC8 539 aa16.41■□□□□ 0.22
VPS54-203ENST00000409558 SBNO1A3KN83 1393 aa16.4■□□□□ 0.22
VPS54-203ENST00000409558 PRPF40AO75400 957 aaKnown RBP16.4■□□□□ 0.22
VPS54-203ENST00000409558 CAVIN1Q6NZI2 390 aaKnown RBP16.4■□□□□ 0.22
VPS54-203ENST00000409558 PLEKHG1Q9ULL1 1385 aa16.4■□□□□ 0.22
VPS54-203ENST00000409558 CPA1P15085 419 aa16.4■□□□□ 0.22
VPS54-203ENST00000409558 PROSER3Q2NL68 480 aa16.4■□□□□ 0.22
VPS54-203ENST00000409558 CDC42BPGQ6DT37 1551 aa16.4■□□□□ 0.22
VPS54-203ENST00000409558 A0A0G2JS52 829 aa16.4■□□□□ 0.22
VPS54-203ENST00000409558 GOLGA6L22H0YM25 854 aa16.4■□□□□ 0.22
VPS54-203ENST00000409558 ERC2O15083 957 aa16.4■□□□□ 0.22
VPS54-203ENST00000409558 MPNDQ8N594 471 aa16.4■□□□□ 0.22
VPS54-203ENST00000409558 SRCIN1Q9C0H9 1055 aa16.4■□□□□ 0.22
VPS54-203ENST00000409558 USP44Q9H0E7 712 aa16.4■□□□□ 0.22
VPS54-203ENST00000409558 RIMS1Q86UR5 1692 aaKnown RBP16.39■□□□□ 0.22
VPS54-203ENST00000409558 ST18O60284 1047 aa16.39■□□□□ 0.21
VPS54-203ENST00000409558 PROSER2Q86WR7 435 aaPredicted RBP16.39■□□□□ 0.21
VPS54-203ENST00000409558 SPG7Q9UQ90 795 aa16.39■□□□□ 0.21
VPS54-203ENST00000409558 DDX11L8A8MPP1 907 aa16.39■□□□□ 0.21
VPS54-203ENST00000409558 L1TD1Q5T7N2 865 aaKnown RBP16.39■□□□□ 0.21
VPS54-203ENST00000409558 CWC27Q6UX04 472 aaKnown RBP16.39■□□□□ 0.21
VPS54-203ENST00000409558 GAS2L3Q86XJ1 694 aa16.39■□□□□ 0.21
VPS54-203ENST00000409558 RBM27Q9P2N5 1060 aaKnown RBP16.39■□□□□ 0.21
VPS54-203ENST00000409558 TTC21AQ8NDW8 1320 aa16.39■□□□□ 0.21
VPS54-203ENST00000409558 GNAI3P08754 354 aa16.39■□□□□ 0.21
VPS54-203ENST00000409558 KLHDC4Q8TBB5 520 aa16.39■□□□□ 0.21
VPS54-203ENST00000409558 CEP170BQ9Y4F5 1589 aaPredicted RBP16.39■□□□□ 0.21
VPS54-203ENST00000409558 IGSF1Q8N6C5 1336 aa16.39■□□□□ 0.21
VPS54-203ENST00000409558 OVOS2A0A0J9YW53 1432 aa16.38■□□□□ 0.21
VPS54-203ENST00000409558 OVOS2Q6IE36 1432 aa16.38■□□□□ 0.21
VPS54-203ENST00000409558 REC8O95072 547 aa16.38■□□□□ 0.21
VPS54-203ENST00000409558 SIRT1Q96EB6 747 aa16.38■□□□□ 0.21
VPS54-203ENST00000409558 CRB1P82279 1406 aa16.37■□□□□ 0.21
VPS54-203ENST00000409558 IL25Q9H293 177 aa16.37■□□□□ 0.21
VPS54-203ENST00000409558 RABEP1Q15276 862 aa16.37■□□□□ 0.21
VPS54-203ENST00000409558 NRXN3Q9Y4C0 1643 aa16.36■□□□□ 0.21
VPS54-203ENST00000409558 GCP02774 474 aa16.36■□□□□ 0.21
VPS54-203ENST00000409558 RRAGDQ9NQL2 400 aaPredicted RBP16.36■□□□□ 0.21
VPS54-203ENST00000409558 ATP10DQ9P241 1426 aa16.36■□□□□ 0.21
VPS54-203ENST00000409558 AXIN2Q9Y2T1 843 aa16.36■□□□□ 0.21
VPS54-203ENST00000409558 AGLP35573 1532 aa16.36■□□□□ 0.21
VPS54-203ENST00000409558 SNX21Q969T3 373 aa16.36■□□□□ 0.21
VPS54-203ENST00000409558 SIPA1L2Q9P2F8 1722 aaPredicted RBP16.35■□□□□ 0.21
VPS54-203ENST00000409558 RNF214Q8ND24 703 aa16.35■□□□□ 0.21
VPS54-203ENST00000409558 ANKRD24Q8TF21 1146 aa16.35■□□□□ 0.21
VPS54-203ENST00000409558 MAP3K2Q9Y2U5 619 aa16.35■□□□□ 0.21
VPS54-203ENST00000409558 CHMP3Q9Y3E7 222 aa16.35■□□□□ 0.21
VPS54-203ENST00000409558 KCNJ4P48050 445 aa16.35■□□□□ 0.21
VPS54-203ENST00000409558 GRPEL1Q9HAV7 217 aa16.35■□□□□ 0.21
VPS54-203ENST00000409558 AK9Q5TCS8 1911 aa16.35■□□□□ 0.21
VPS54-203ENST00000409558 MAP3K5Q99683 1374 aa16.35■□□□□ 0.21
VPS54-203ENST00000409558 BAG4O95429 457 aaKnown RBP16.35■□□□□ 0.21
VPS54-203ENST00000409558 TRIM44Q96DX7 344 aaPredicted RBP16.35■□□□□ 0.21
VPS54-203ENST00000409558 NDUFB9Q9Y6M9 179 aa16.35■□□□□ 0.21
VPS54-203ENST00000409558 RAB3GAP1Q15042 981 aa16.34■□□□□ 0.21
VPS54-203ENST00000409558 RGS12O14924 1447 aa16.34■□□□□ 0.21
VPS54-203ENST00000409558 CCDC8Q9H0W5 538 aaPredicted RBP16.34■□□□□ 0.21
VPS54-203ENST00000409558 ATP8B2P98198 1209 aa16.34■□□□□ 0.21
VPS54-203ENST00000409558 SOS1Q07889 1333 aaPredicted RBP16.34■□□□□ 0.21
VPS54-203ENST00000409558 DLG5Q8TDM6 1919 aa16.34■□□□□ 0.21
VPS54-203ENST00000409558 DNAAF4Q8WXU2 420 aa16.33■□□□□ 0.21
VPS54-203ENST00000409558 NAP1L5Q96NT1 182 aaPredicted RBP16.33■□□□□ 0.21
VPS54-203ENST00000409558 TCEANC2Q96MN5 208 aa16.33■□□□□ 0.21
VPS54-203ENST00000409558 ARHGEF10O15013 1369 aa16.32■□□□□ 0.2
VPS54-203ENST00000409558 KIAA0232Q92628 1395 aa16.32■□□□□ 0.2
VPS54-203ENST00000409558 RHPN1Q8TCX5 695 aa16.32■□□□□ 0.2
VPS54-203ENST00000409558 EIF4A1P60842 406 aaKnown RBP16.31■□□□□ 0.2
VPS54-203ENST00000409558 PLEKHO1Q53GL0 409 aaPredicted RBP16.31■□□□□ 0.2
VPS54-203ENST00000409558 IP6K1Q92551 441 aa16.31■□□□□ 0.2
VPS54-203ENST00000409558 ESYT1Q9BSJ8 1104 aa16.31■□□□□ 0.2
VPS54-203ENST00000409558 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP16.31■□□□□ 0.2
VPS54-203ENST00000409558 RIC3Q7Z5B4 369 aa16.31■□□□□ 0.2
VPS54-203ENST00000409558 PPFIA3O75145 1194 aa16.31■□□□□ 0.2
VPS54-203ENST00000409558 KRT28Q7Z3Y7 464 aa16.31■□□□□ 0.2
VPS54-203ENST00000409558 TMX3Q96JJ7 454 aa16.31■□□□□ 0.2
VPS54-203ENST00000409558 ATP5J2-PTCD1G3V325 749 aa16.31■□□□□ 0.2
VPS54-203ENST00000409558 PTCD1O75127 700 aaKnown RBP16.31■□□□□ 0.2
VPS54-203ENST00000409558 MCCP23508 829 aa16.31■□□□□ 0.2
Retrieved 100 of 20,778 RNA–protein pairs in 422.8 ms