RNA–Protein interactions for RNA: ENST00000398640.6

PCDHA11-201, Transcript of protocadherin alpha 11, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene PCDHA11, Length 6,115 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA11-201ENST00000398640 ABCA8O94911 1581 aa16.92■□□□□ 0.3
PCDHA11-201ENST00000398640 SMC2O95347 1197 aa16.92■□□□□ 0.3
PCDHA11-201ENST00000398640 NACAP1Q9BZK3 213 aa16.92■□□□□ 0.3
PCDHA11-201ENST00000398640 USP21Q9UK80 565 aa16.92■□□□□ 0.3
PCDHA11-201ENST00000398640 ATP6V1AP38606 617 aa16.92■□□□□ 0.3
PCDHA11-201ENST00000398640 ANKIB1Q9P2G1 1089 aa16.91■□□□□ 0.3
PCDHA11-201ENST00000398640 MAGI2Q86UL8 1455 aa16.91■□□□□ 0.3
PCDHA11-201ENST00000398640 TMPOP42166 694 aaKnown RBP16.91■□□□□ 0.3
PCDHA11-201ENST00000398640 ZNF622Q969S3 477 aaKnown RBP eCLIP16.91■□□□□ 0.3
PCDHA11-201ENST00000398640 TMEM2Q9UHN6 1383 aa16.91■□□□□ 0.3
PCDHA11-201ENST00000398640 CCDC69A6NI79 296 aa16.9■□□□□ 0.3
PCDHA11-201ENST00000398640 ANKRD36BQ8N2N9 1353 aa16.9■□□□□ 0.3
PCDHA11-201ENST00000398640 ABCC1P33527 1531 aa16.9■□□□□ 0.3
PCDHA11-201ENST00000398640 MATR3P43243 847 aaKnown RBP eCLIP16.9■□□□□ 0.3
PCDHA11-201ENST00000398640 FANCIQ9NVI1 1328 aa16.9■□□□□ 0.3
PCDHA11-201ENST00000398640 CDCA7Q9BWT1 371 aaPredicted RBP16.9■□□□□ 0.3
PCDHA11-201ENST00000398640 TRMT112Q9UI30 125 aaKnown RBP16.9■□□□□ 0.3
PCDHA11-201ENST00000398640 PDZRN3Q9UPQ7 1066 aa16.89■□□□□ 0.3
PCDHA11-201ENST00000398640 DUSP27Q5VZP5 1158 aa16.89■□□□□ 0.29
PCDHA11-201ENST00000398640 TEX35Q5T0J7 233 aa16.89■□□□□ 0.29
PCDHA11-201ENST00000398640 LARP1Q6PKG0 1096 aaKnown RBP16.89■□□□□ 0.29
PCDHA11-201ENST00000398640 TFCP2L1Q9NZI6 479 aa16.89■□□□□ 0.29
PCDHA11-201ENST00000398640 LRP2BPQ9P2M1 347 aa16.89■□□□□ 0.29
PCDHA11-201ENST00000398640 DNMT1P26358 1616 aaKnown RBP16.89■□□□□ 0.29
PCDHA11-201ENST00000398640 YTHDC2Q9H6S0 1430 aaKnown RBP16.89■□□□□ 0.29
PCDHA11-201ENST00000398640 SOGA3Q5TF21 947 aa16.89■□□□□ 0.29
PCDHA11-201ENST00000398640 MAGEC2Q9UBF1 373 aaPredicted RBP16.89■□□□□ 0.29
PCDHA11-201ENST00000398640 MYD88Q99836 296 aa16.89■□□□□ 0.29
PCDHA11-201ENST00000398640 TXLNAP40222 546 aa16.88■□□□□ 0.29
PCDHA11-201ENST00000398640 TDO2P48775 406 aa16.88■□□□□ 0.29
PCDHA11-201ENST00000398640 USP5P45974 858 aa16.88■□□□□ 0.29
PCDHA11-201ENST00000398640 STK32BQ9NY57 414 aa16.88■□□□□ 0.29
PCDHA11-201ENST00000398640 DCTN1Q14203 1278 aa16.88■□□□□ 0.29
PCDHA11-201ENST00000398640 NPATQ14207 1427 aa16.88■□□□□ 0.29
PCDHA11-201ENST00000398640 PTPRKQ15262 1439 aa16.88■□□□□ 0.29
PCDHA11-201ENST00000398640 SYCP1Q15431 976 aa16.88■□□□□ 0.29
PCDHA11-201ENST00000398640 HIP1O00291 1037 aa16.88■□□□□ 0.29
PCDHA11-201ENST00000398640 KINO60870 393 aaKnown RBP16.88■□□□□ 0.29
PCDHA11-201ENST00000398640 CCDC173Q0VFZ6 552 aa16.88■□□□□ 0.29
PCDHA11-201ENST00000398640 RSPH6AQ9H0K4 717 aa16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 ABCF2Q9UG63 623 aa16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 CT47B1P0C2W7 299 aaPredicted RBP16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 WDR78Q5VTH9 848 aa16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 CAVIN1Q6NZI2 390 aaKnown RBP16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 TRIM5Q9C035 493 aa16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 CEP126Q9P2H0 1117 aa16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 FIBPO43427 364 aa16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 NFKBIBQ15653 356 aa16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 NPHP4O75161 1426 aaPredicted RBP16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 WDHD1O75717 1129 aaPredicted RBP16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 ZNF76P36508 570 aa16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 STK38Q15208 465 aa16.87■□□□□ 0.29
PCDHA11-201ENST00000398640 GCP02774 474 aa16.86■□□□□ 0.29
PCDHA11-201ENST00000398640 AACSQ86V21 672 aa16.86■□□□□ 0.29
PCDHA11-201ENST00000398640 EIF2AK4Q9P2K8 1649 aaKnown RBP16.86■□□□□ 0.29
PCDHA11-201ENST00000398640 ARHGEF10O15013 1369 aa16.86■□□□□ 0.29
PCDHA11-201ENST00000398640 PPP1R42Q7Z4L9 355 aa16.86■□□□□ 0.29
PCDHA11-201ENST00000398640 PRPF40AO75400 957 aaKnown RBP16.86■□□□□ 0.29
PCDHA11-201ENST00000398640 ORAI2Q96SN7 254 aa16.86■□□□□ 0.29
PCDHA11-201ENST00000398640 PDCL3Q9H2J4 239 aa16.86■□□□□ 0.29
PCDHA11-201ENST00000398640 CDR1P51861 262 aa16.86■□□□□ 0.29
PCDHA11-201ENST00000398640 HYPKQ9NX55 129 aa16.85■□□□□ 0.29
PCDHA11-201ENST00000398640 IDH1O75874 414 aaKnown RBP16.85■□□□□ 0.29
PCDHA11-201ENST00000398640 GRM1Q13255 1194 aa16.85■□□□□ 0.29
PCDHA11-201ENST00000398640 CAVIN4Q5BKX8 364 aa16.85■□□□□ 0.29
PCDHA11-201ENST00000398640 ZSCAN25Q6NSZ9 544 aa16.84■□□□□ 0.29
PCDHA11-201ENST00000398640 METTL24Q5JXM2 366 aa16.84■□□□□ 0.29
PCDHA11-201ENST00000398640 CRACR2BQ8N4Y2 399 aaPredicted RBP16.84■□□□□ 0.29
PCDHA11-201ENST00000398640 THUMPD2Q9BTF0 503 aaKnown RBP16.84■□□□□ 0.29
PCDHA11-201ENST00000398640 ARGLU1Q9NWB6 273 aaPredicted RBP16.84■□□□□ 0.29
PCDHA11-201ENST00000398640 GPTP24298 496 aa16.84■□□□□ 0.29
PCDHA11-201ENST00000398640 NASPP49321 788 aaPredicted RBP16.84■□□□□ 0.29
PCDHA11-201ENST00000398640 LRRCC1Q9C099 1032 aa16.84■□□□□ 0.29
PCDHA11-201ENST00000398640 PARP3Q9Y6F1 533 aa16.84■□□□□ 0.29
PCDHA11-201ENST00000398640 VSIG10Q8N0Z9 540 aa16.84■□□□□ 0.29
PCDHA11-201ENST00000398640 SSBP05455 408 aaKnown RBP eCLIP16.83■□□□□ 0.29
PCDHA11-201ENST00000398640 FILIP1LQ4L180 1135 aa16.83■□□□□ 0.29
PCDHA11-201ENST00000398640 NBPF6Q5VWK0 638 aa16.83■□□□□ 0.29
PCDHA11-201ENST00000398640 DDX46Q7L014 1031 aaKnown RBP16.83■□□□□ 0.29
PCDHA11-201ENST00000398640 NBPF5PQ86XG9 351 aaPredicted RBP16.83■□□□□ 0.29
PCDHA11-201ENST00000398640 NBPF4Q96M43 638 aa16.83■□□□□ 0.29
PCDHA11-201ENST00000398640 ZNF396Q96N95 335 aaPredicted RBP16.83■□□□□ 0.28
PCDHA11-201ENST00000398640 DISP3Q9P2K9 1392 aa16.83■□□□□ 0.28
PCDHA11-201ENST00000398640 SNRPA1P09661 255 aaKnown RBP16.83■□□□□ 0.28
PCDHA11-201ENST00000398640 C16orf71Q8IYS4 520 aaPredicted RBP16.83■□□□□ 0.28
PCDHA11-201ENST00000398640 BAG6P46379 1132 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 FAM98CQ17RN3 349 aaKnown RBP16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 ZBTB3Q9H5J0 574 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 FAM43AQ8N2R8 423 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 HSP90B2PQ58FF3 399 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 TRIM22Q8IYM9 498 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 SCLT1Q96NL6 688 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 KDM5DQ9BY66 1539 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 MPNDQ8N594 471 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 SPC24Q8NBT2 197 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 TANGO6Q9C0B7 1094 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 ACBD3Q9H3P7 528 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 RTCBQ9Y3I0 505 aaKnown RBP16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 CYP46A1Q9Y6A2 500 aa16.82■□□□□ 0.28
PCDHA11-201ENST00000398640 C6orf229H3BNL8 230 aa16.81■□□□□ 0.28
Retrieved 100 of 20,778 RNA–protein pairs in 10.8 ms