RNA–Protein interactions for RNA: ENST00000396581.5

TRIM40-207, Transcript of tripartite motif containing 40, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene TRIM40, Length 2,086 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM40-207ENST00000396581 ZSCAN23Q3MJ62 389 aa16.36■□□□□ 0.21
TRIM40-207ENST00000396581 C16orf71Q8IYS4 520 aaPredicted RBP16.36■□□□□ 0.21
TRIM40-207ENST00000396581 ANP32BQ92688 251 aaKnown RBP16.36■□□□□ 0.21
TRIM40-207ENST00000396581 DCCP43146 1447 aa16.36■□□□□ 0.21
TRIM40-207ENST00000396581 STRCP1A6NGW2 1772 aa16.36■□□□□ 0.21
TRIM40-207ENST00000396581 MCTP1Q6DN14 999 aa16.36■□□□□ 0.21
TRIM40-207ENST00000396581 USP54Q70EL1 1684 aa16.36■□□□□ 0.21
TRIM40-207ENST00000396581 C1orf167Q5SNV9 1468 aa16.35■□□□□ 0.21
TRIM40-207ENST00000396581 FAM83GA6ND36 823 aa16.35■□□□□ 0.21
TRIM40-207ENST00000396581 OFD1O75665 1012 aa16.35■□□□□ 0.21
TRIM40-207ENST00000396581 EIF4A2Q14240 407 aaKnown RBP16.35■□□□□ 0.21
TRIM40-207ENST00000396581 HSP90AB2PQ58FF8 381 aa16.35■□□□□ 0.21
TRIM40-207ENST00000396581 PTPRCP08575 1304 aa16.35■□□□□ 0.21
TRIM40-207ENST00000396581 ST18O60284 1047 aa16.34■□□□□ 0.21
TRIM40-207ENST00000396581 CASC1Q6TDU7 716 aa16.34■□□□□ 0.21
TRIM40-207ENST00000396581 OSBPL3Q9H4L5 887 aa16.34■□□□□ 0.21
TRIM40-207ENST00000396581 STRCQ7RTU9 1775 aa16.34■□□□□ 0.21
TRIM40-207ENST00000396581 SBNO1A3KN83 1393 aa16.34■□□□□ 0.21
TRIM40-207ENST00000396581 FLT4P35916 1363 aa16.34■□□□□ 0.21
TRIM40-207ENST00000396581 CHL1O00533 1208 aa16.34■□□□□ 0.21
TRIM40-207ENST00000396581 FOXO3O43524 673 aa16.34■□□□□ 0.21
TRIM40-207ENST00000396581 ZDHHC9Q9Y397 364 aa16.34■□□□□ 0.21
TRIM40-207ENST00000396581 REC8O95072 547 aa16.33■□□□□ 0.21
TRIM40-207ENST00000396581 ATF3P18847 181 aa16.33■□□□□ 0.21
TRIM40-207ENST00000396581 PKP1Q13835 747 aa16.33■□□□□ 0.21
TRIM40-207ENST00000396581 OTUD7AQ8TE49 926 aaPredicted RBP16.33■□□□□ 0.21
TRIM40-207ENST00000396581 PEAK1Q9H792 1746 aa16.33■□□□□ 0.21
TRIM40-207ENST00000396581 SOX12O15370 315 aa16.33■□□□□ 0.2
TRIM40-207ENST00000396581 NUTM2GQ5VZR2 741 aa16.33■□□□□ 0.2
TRIM40-207ENST00000396581 CAVIN1Q6NZI2 390 aaKnown RBP16.33■□□□□ 0.2
TRIM40-207ENST00000396581 MSH6P52701 1360 aa16.32■□□□□ 0.2
TRIM40-207ENST00000396581 AK9Q5TCS8 1911 aa16.32■□□□□ 0.2
TRIM40-207ENST00000396581 NOL7Q9UMY1 257 aaKnown RBP16.32■□□□□ 0.2
TRIM40-207ENST00000396581 MARF1Q9Y4F3 1742 aaKnown RBP16.32■□□□□ 0.2
TRIM40-207ENST00000396581 ZNF500O60304 480 aaPredicted RBP16.31■□□□□ 0.2
TRIM40-207ENST00000396581 CADPS2Q86UW7 1296 aa16.31■□□□□ 0.2
TRIM40-207ENST00000396581 RBSNQ9H1K0 784 aa16.31■□□□□ 0.2
TRIM40-207ENST00000396581 MST1RQ04912 1400 aa16.31■□□□□ 0.2
TRIM40-207ENST00000396581 DCTN1Q14203 1278 aa16.31■□□□□ 0.2
TRIM40-207ENST00000396581 PDZRN4Q6ZMN7 1036 aaPredicted RBP16.31■□□□□ 0.2
TRIM40-207ENST00000396581 KIAA1211Q6ZU35 1233 aa16.31■□□□□ 0.2
TRIM40-207ENST00000396581 ZGPATQ8N5A5 531 aaKnown RBP16.31■□□□□ 0.2
TRIM40-207ENST00000396581 GPT2Q8TD30 523 aa16.31■□□□□ 0.2
TRIM40-207ENST00000396581 ERC2O15083 957 aa16.3■□□□□ 0.2
TRIM40-207ENST00000396581 AMPHP49418 695 aa16.3■□□□□ 0.2
TRIM40-207ENST00000396581 MSNP26038 577 aaKnown RBP16.3■□□□□ 0.2
TRIM40-207ENST00000396581 PRIM1P49642 420 aaKnown RBP16.3■□□□□ 0.2
TRIM40-207ENST00000396581 IL17RAQ96F46 866 aa16.29■□□□□ 0.2
TRIM40-207ENST00000396581 RGPD1P0DJD0 1748 aa16.29■□□□□ 0.2
TRIM40-207ENST00000396581 SULT6B1Q6IMI4 303 aa16.28■□□□□ 0.2
TRIM40-207ENST00000396581 KCNH5Q8NCM2 988 aa16.28■□□□□ 0.2
TRIM40-207ENST00000396581 MEIS3Q99687 375 aa16.28■□□□□ 0.2
TRIM40-207ENST00000396581 EIF2AK3Q9NZJ5 1116 aaKnown RBP16.28■□□□□ 0.2
TRIM40-207ENST00000396581 TUBGCP6Q96RT7 1819 aa16.28■□□□□ 0.2
TRIM40-207ENST00000396581 KIF1AQ12756 1690 aa16.28■□□□□ 0.2
TRIM40-207ENST00000396581 CRB1P82279 1406 aa16.28■□□□□ 0.2
TRIM40-207ENST00000396581 SALL3Q9BXA9 1300 aa16.28■□□□□ 0.2
TRIM40-207ENST00000396581 HOXC9P31274 260 aa16.28■□□□□ 0.2
TRIM40-207ENST00000396581 LRSAM1Q6UWE0 723 aa16.28■□□□□ 0.2
TRIM40-207ENST00000396581 PDCL3Q9H2J4 239 aa16.28■□□□□ 0.2
TRIM40-207ENST00000396581 SMARCA5O60264 1052 aaPredicted RBP16.27■□□□□ 0.2
TRIM40-207ENST00000396581 PRPF40AO75400 957 aaKnown RBP16.27■□□□□ 0.2
TRIM40-207ENST00000396581 MCM2P49736 904 aa16.27■□□□□ 0.2
TRIM40-207ENST00000396581 CUL4AQ13619 759 aa16.27■□□□□ 0.2
TRIM40-207ENST00000396581 KRT28Q7Z3Y7 464 aa16.27■□□□□ 0.2
TRIM40-207ENST00000396581 AEBP1Q8IUX7 1158 aa16.27■□□□□ 0.2
TRIM40-207ENST00000396581 ARHGEF10O15013 1369 aa16.27■□□□□ 0.19
TRIM40-207ENST00000396581 MCM5P33992 734 aa16.26■□□□□ 0.19
TRIM40-207ENST00000396581 KRT24Q2M2I5 525 aa16.26■□□□□ 0.19
TRIM40-207ENST00000396581 KDRP35968 1356 aa16.26■□□□□ 0.19
TRIM40-207ENST00000396581 HMMRO75330 724 aa16.26■□□□□ 0.19
TRIM40-207ENST00000396581 PDE1AP54750 535 aa16.26■□□□□ 0.19
TRIM40-207ENST00000396581 XPCQ01831 940 aaPredicted RBP16.26■□□□□ 0.19
TRIM40-207ENST00000396581 TMEM63CQ9P1W3 806 aa16.26■□□□□ 0.19
TRIM40-207ENST00000396581 NFAT5O94916 1531 aa16.25■□□□□ 0.19
TRIM40-207ENST00000396581 MBD3O95983 291 aa16.25■□□□□ 0.19
TRIM40-207ENST00000396581 NCLP19338 710 aaKnown RBP16.25■□□□□ 0.19
TRIM40-207ENST00000396581 IGSF1Q8N6C5 1336 aa16.25■□□□□ 0.19
TRIM40-207ENST00000396581 ZNF335Q9H4Z2 1342 aaPredicted RBP16.25■□□□□ 0.19
TRIM40-207ENST00000396581 BRD1O95696 1058 aa16.25■□□□□ 0.19
TRIM40-207ENST00000396581 INTS4Q96HW7 963 aaKnown RBP16.24■□□□□ 0.19
TRIM40-207ENST00000396581 EYA1Q99502 592 aa16.24■□□□□ 0.19
TRIM40-207ENST00000396581 ZKSCAN5Q9Y2L8 839 aa16.24■□□□□ 0.19
TRIM40-207ENST00000396581 TRPM3Q9HCF6 1732 aaPredicted RBP16.24■□□□□ 0.19
TRIM40-207ENST00000396581 GCP02774 474 aa16.23■□□□□ 0.19
TRIM40-207ENST00000396581 ANAPC15P60006 121 aa16.23■□□□□ 0.19
TRIM40-207ENST00000396581 IP6K1Q92551 441 aa16.23■□□□□ 0.19
TRIM40-207ENST00000396581 TMX3Q96JJ7 454 aa16.23■□□□□ 0.19
TRIM40-207ENST00000396581 RBM27Q9P2N5 1060 aaKnown RBP16.23■□□□□ 0.19
TRIM40-207ENST00000396581 CCT4P50991 539 aaKnown RBP16.23■□□□□ 0.19
TRIM40-207ENST00000396581 NPHP3Q7Z494 1330 aa16.22■□□□□ 0.19
TRIM40-207ENST00000396581 XIRP1Q702N8 1843 aaKnown RBP16.22■□□□□ 0.19
TRIM40-207ENST00000396581 EPB41L2O43491 1005 aaKnown RBP16.22■□□□□ 0.19
TRIM40-207ENST00000396581 MCM10Q7L590 875 aa16.22■□□□□ 0.19
TRIM40-207ENST00000396581 ESYT1Q9BSJ8 1104 aa16.22■□□□□ 0.19
TRIM40-207ENST00000396581 NSFL1CQ9UNZ2 370 aaKnown RBP16.22■□□□□ 0.19
TRIM40-207ENST00000396581 SLIT3O75094 1523 aa16.21■□□□□ 0.19
TRIM40-207ENST00000396581 ARHGEF25Q86VW2 580 aa16.21■□□□□ 0.19
TRIM40-207ENST00000396581 SLC4A2P04920 1241 aa16.2■□□□□ 0.18
TRIM40-207ENST00000396581 NEK4P51957 841 aa16.2■□□□□ 0.18
Retrieved 100 of 20,778 RNA–protein pairs in 17.7 ms