RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 SLC15A2Q16348 729 aa28.83■■■□□ 2.21
CLN3-207ENST00000395653 KCNQ4P56696 695 aa28.82■■■□□ 2.2
CLN3-207ENST00000395653 WDR43Q15061 677 aaKnown RBP eCLIP28.82■■■□□ 2.2
CLN3-207ENST00000395653 IL17REQ8NFR9 667 aa28.81■■■□□ 2.2
CLN3-207ENST00000395653 MAPK8IP3Q9UPT6 1336 aa28.81■■■□□ 2.2
CLN3-207ENST00000395653 CEMIPQ8WUJ3 1361 aa28.8■■■□□ 2.2
CLN3-207ENST00000395653 C5P01031 1676 aa28.8■■■□□ 2.2
CLN3-207ENST00000395653 LOC102724428A0A0B4J2F2 783 aa28.79■■■□□ 2.2
CLN3-207ENST00000395653 SIK1P57059 783 aa28.79■■■□□ 2.2
CLN3-207ENST00000395653 ZNF827Q17R98 1081 aa28.78■■■□□ 2.2
CLN3-207ENST00000395653 AKT1S1Q96B36 256 aa28.78■■■□□ 2.2
CLN3-207ENST00000395653 HTATSF1O43719 755 aaKnown RBP28.77■■■□□ 2.2
CLN3-207ENST00000395653 ZNF831Q5JPB2 1677 aa28.77■■■□□ 2.2
CLN3-207ENST00000395653 RTF1Q92541 710 aaKnown RBP28.77■■■□□ 2.2
CLN3-207ENST00000395653 TAF1LQ8IZX4 1826 aa28.76■■■□□ 2.19
CLN3-207ENST00000395653 TEFQ10587 303 aa28.76■■■□□ 2.19
CLN3-207ENST00000395653 NFE2L2Q16236 605 aa28.75■■■□□ 2.19
CLN3-207ENST00000395653 ADAMTS8Q9UP79 889 aa28.75■■■□□ 2.19
CLN3-207ENST00000395653 ATP6V1AP38606 617 aa28.74■■■□□ 2.19
CLN3-207ENST00000395653 SIPA1L3O60292 1781 aaPredicted RBP28.74■■■□□ 2.19
CLN3-207ENST00000395653 CASZ1Q86V15 1759 aa28.72■■■□□ 2.19
CLN3-207ENST00000395653 QSER1Q2KHR3 1735 aa28.72■■■□□ 2.19
CLN3-207ENST00000395653 CCDC184Q52MB2 194 aa28.72■■■□□ 2.19
CLN3-207ENST00000395653 RBM42Q9BTD8 480 aaKnown RBP28.72■■■□□ 2.19
CLN3-207ENST00000395653 C4BP0C0L5 1744 aa28.71■■■□□ 2.19
CLN3-207ENST00000395653 DLG5Q8TDM6 1919 aa28.71■■■□□ 2.19
CLN3-207ENST00000395653 SLC4A9Q96Q91 983 aa28.71■■■□□ 2.19
CLN3-207ENST00000395653 ITPK1Q13572 414 aa28.7■■■□□ 2.19
CLN3-207ENST00000395653 MCM10Q7L590 875 aa28.7■■■□□ 2.19
CLN3-207ENST00000395653 RUNDC1Q96C34 613 aa28.7■■■□□ 2.19
CLN3-207ENST00000395653 PTCD1O75127 700 aaKnown RBP28.69■■■□□ 2.18
CLN3-207ENST00000395653 TFCP2L1Q9NZI6 479 aa28.69■■■□□ 2.18
CLN3-207ENST00000395653 CICQ96RK0 1608 aaPredicted RBP28.69■■■□□ 2.18
CLN3-207ENST00000395653 SLC39A6Q13433 755 aa28.69■■■□□ 2.18
CLN3-207ENST00000395653 CCDC146Q8IYE0 955 aa28.69■■■□□ 2.18
CLN3-207ENST00000395653 LINC00116Q8NCU8 138 aa28.69■■■□□ 2.18
CLN3-207ENST00000395653 KCPQ6ZWJ8 1503 aa28.68■■■□□ 2.18
CLN3-207ENST00000395653 DCTN1Q14203 1278 aa28.68■■■□□ 2.18
CLN3-207ENST00000395653 MRS2Q9HD23 443 aa28.67■■■□□ 2.18
CLN3-207ENST00000395653 TUBGCP6Q96RT7 1819 aa28.67■■■□□ 2.18
CLN3-207ENST00000395653 UBR2Q8IWV8 1755 aa28.66■■■□□ 2.18
CLN3-207ENST00000395653 LRP5O75197 1615 aa28.66■■■□□ 2.18
CLN3-207ENST00000395653 TTC5Q8N0Z6 440 aa28.66■■■□□ 2.18
CLN3-207ENST00000395653 PDGFDQ9GZP0 370 aaPredicted RBP28.66■■■□□ 2.18
CLN3-207ENST00000395653 COL5A3P25940 1745 aaPredicted RBP28.66■■■□□ 2.18
CLN3-207ENST00000395653 PNPLA7Q6ZV29 1317 aa28.65■■■□□ 2.18
CLN3-207ENST00000395653 TMPOP42166 694 aaKnown RBP28.65■■■□□ 2.18
CLN3-207ENST00000395653 RIPK4P57078 832 aa28.64■■■□□ 2.18
CLN3-207ENST00000395653 ZNF790Q6PG37 636 aa28.64■■■□□ 2.18
CLN3-207ENST00000395653 AK7Q96M32 723 aa28.64■■■□□ 2.18
CLN3-207ENST00000395653 SRCAPQ6ZRS2 3230 aa28.64■■■□□ 2.18
CLN3-207ENST00000395653 TJP1Q07157 1748 aa28.64■■■□□ 2.17
CLN3-207ENST00000395653 BTBD11A6QL63 1104 aa28.63■■■□□ 2.17
CLN3-207ENST00000395653 PNISRQ8TF01 805 aaKnown RBP28.63■■■□□ 2.17
CLN3-207ENST00000395653 LMOD3Q0VAK6 560 aa28.61■■■□□ 2.17
CLN3-207ENST00000395653 VSIG10Q8N0Z9 540 aa28.61■■■□□ 2.17
CLN3-207ENST00000395653 RC3H1Q5TC82 1133 aaKnown RBP28.6■■■□□ 2.17
CLN3-207ENST00000395653 FLAD1Q8NFF5 587 aa28.6■■■□□ 2.17
CLN3-207ENST00000395653 CNTNAP4Q9C0A0 1308 aa28.6■■■□□ 2.17
CLN3-207ENST00000395653 TAF7Q15545 349 aaPredicted RBP28.6■■■□□ 2.17
CLN3-207ENST00000395653 UBR3Q6ZT12 1888 aa28.6■■■□□ 2.17
CLN3-207ENST00000395653 SLC16A10Q8TF71 515 aa28.59■■■□□ 2.17
CLN3-207ENST00000395653 SPON1Q9HCB6 807 aa28.59■■■□□ 2.17
CLN3-207ENST00000395653 RRP7AQ9Y3A4 280 aaKnown RBP28.59■■■□□ 2.17
CLN3-207ENST00000395653 ZNF496Q96IT1 587 aaPredicted RBP28.58■■■□□ 2.17
CLN3-207ENST00000395653 MTFR1LQ9H019 292 aa28.58■■■□□ 2.17
CLN3-207ENST00000395653 GNPATO15228 680 aa28.57■■■□□ 2.16
CLN3-207ENST00000395653 ZBTB7AO95365 584 aa28.57■■■□□ 2.16
CLN3-207ENST00000395653 SSFA2P28290 1259 aa28.57■■■□□ 2.16
CLN3-207ENST00000395653 COL23A1Q86Y22 540 aaPredicted RBP28.57■■■□□ 2.16
CLN3-207ENST00000395653 DNAJC10Q8IXB1 793 aa28.57■■■□□ 2.16
CLN3-207ENST00000395653 THUMPD2Q9BTF0 503 aaKnown RBP28.57■■■□□ 2.16
CLN3-207ENST00000395653 HEG1Q9ULI3 1381 aa28.57■■■□□ 2.16
CLN3-207ENST00000395653 NEUROD2Q15784 382 aa28.56■■■□□ 2.16
CLN3-207ENST00000395653 FMNL2Q96PY5 1086 aa28.56■■■□□ 2.16
CLN3-207ENST00000395653 AMIGO3Q86WK7 504 aa28.55■■■□□ 2.16
CLN3-207ENST00000395653 KCNQ3O43525 872 aa28.54■■■□□ 2.16
CLN3-207ENST00000395653 CRKLP46109 303 aaKnown RBP28.54■■■□□ 2.16
CLN3-207ENST00000395653 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP28.53■■■□□ 2.16
CLN3-207ENST00000395653 TRIM35Q9UPQ4 493 aa28.53■■■□□ 2.16
CLN3-207ENST00000395653 RTCBQ9Y3I0 505 aaKnown RBP28.53■■■□□ 2.16
CLN3-207ENST00000395653 APAF1O14727 1248 aa28.52■■■□□ 2.16
CLN3-207ENST00000395653 CYP19A1P11511 503 aaPredicted RBP28.52■■■□□ 2.16
CLN3-207ENST00000395653 KDM3BQ7LBC6 1761 aa28.52■■■□□ 2.16
CLN3-207ENST00000395653 MYH14Q7Z406 1995 aaKnown RBP28.52■■■□□ 2.16
CLN3-207ENST00000395653 PHF14O94880 888 aa28.52■■■□□ 2.16
CLN3-207ENST00000395653 TEX13AQ9BXU3 409 aaPredicted RBP28.52■■■□□ 2.16
CLN3-207ENST00000395653 MSH5O43196 834 aa28.51■■■□□ 2.15
CLN3-207ENST00000395653 RPS6KA4O75676 772 aa28.51■■■□□ 2.15
CLN3-207ENST00000395653 ATF5Q9Y2D1 282 aaPredicted RBP28.51■■■□□ 2.15
CLN3-207ENST00000395653 ADRA2BP18089 450 aa28.5■■■□□ 2.15
CLN3-207ENST00000395653 INTS5Q6P9B9 1019 aaKnown RBP28.5■■■□□ 2.15
CLN3-207ENST00000395653 MIS18AQ9NYP9 233 aa28.5■■■□□ 2.15
CLN3-207ENST00000395653 STARD3NLO95772 234 aa28.49■■■□□ 2.15
CLN3-207ENST00000395653 CCDC87Q9NVE4 849 aa28.49■■■□□ 2.15
CLN3-207ENST00000395653 COL24A1Q17RW2 1714 aa28.48■■■□□ 2.15
CLN3-207ENST00000395653 PTGER2P43116 358 aa28.48■■■□□ 2.15
CLN3-207ENST00000395653 SMIM5Q71RC9 77 aa28.48■■■□□ 2.15
CLN3-207ENST00000395653 BABAM1Q9NWV8 329 aa28.48■■■□□ 2.15
CLN3-207ENST00000395653 TRAPPC3LQ5T215 181 aa28.47■■■□□ 2.15
Retrieved 100 of 20,778 RNA–protein pairs in 38.8 ms