RNA–Protein interactions for RNA: ENST00000394633.7

PCDHA1-202, Transcript of protocadherin alpha 1, humanhuman

TSL 1 (best) BASIC

Gene PCDHA1, Length 2,204 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PCDHA1-202ENST00000394633 SMARCA5O60264 1052 aaPredicted RBP22.62■■□□□ 1.21
PCDHA1-202ENST00000394633 HAP1P54257 671 aaPredicted RBP22.62■■□□□ 1.21
PCDHA1-202ENST00000394633 KIF1AQ12756 1690 aa22.62■■□□□ 1.21
PCDHA1-202ENST00000394633 USP54Q70EL1 1684 aa22.62■■□□□ 1.21
PCDHA1-202ENST00000394633 ERBB4Q15303 1308 aa22.62■■□□□ 1.21
PCDHA1-202ENST00000394633 SDSP20132 328 aa22.62■■□□□ 1.21
PCDHA1-202ENST00000394633 PTPRCP08575 1304 aa22.61■■□□□ 1.21
PCDHA1-202ENST00000394633 GOLGA6L22H0YM25 854 aa22.61■■□□□ 1.21
PCDHA1-202ENST00000394633 CADPS2Q86UW7 1296 aa22.61■■□□□ 1.21
PCDHA1-202ENST00000394633 MEIS3Q99687 375 aa22.61■■□□□ 1.21
PCDHA1-202ENST00000394633 TRPM3Q9HCF6 1732 aaPredicted RBP22.61■■□□□ 1.21
PCDHA1-202ENST00000394633 ESPNB1AK53 854 aa22.6■■□□□ 1.21
PCDHA1-202ENST00000394633 MAP3K19Q56UN5 1328 aa22.6■■□□□ 1.21
PCDHA1-202ENST00000394633 KLHL40Q2TBA0 621 aa22.59■■□□□ 1.21
PCDHA1-202ENST00000394633 APBB1O00213 710 aa22.59■■□□□ 1.21
PCDHA1-202ENST00000394633 CRB1P82279 1406 aa22.59■■□□□ 1.21
PCDHA1-202ENST00000394633 CYP2E1P05181 493 aaPredicted RBP22.58■■□□□ 1.21
PCDHA1-202ENST00000394633 HSP90AB2PQ58FF8 381 aa22.58■■□□□ 1.2
PCDHA1-202ENST00000394633 DDX49Q9Y6V7 483 aaKnown RBP22.58■■□□□ 1.2
PCDHA1-202ENST00000394633 IBTKQ9P2D0 1353 aaPredicted RBP22.58■■□□□ 1.2
PCDHA1-202ENST00000394633 NAP1L5Q96NT1 182 aaPredicted RBP22.57■■□□□ 1.2
PCDHA1-202ENST00000394633 NUCB2P80303 420 aa22.57■■□□□ 1.2
PCDHA1-202ENST00000394633 PLEKHG5O94827 1062 aa22.56■■□□□ 1.2
PCDHA1-202ENST00000394633 CASC1Q6TDU7 716 aa22.55■■□□□ 1.2
PCDHA1-202ENST00000394633 KRT28Q7Z3Y7 464 aa22.55■■□□□ 1.2
PCDHA1-202ENST00000394633 TRIM44Q96DX7 344 aaPredicted RBP22.55■■□□□ 1.2
PCDHA1-202ENST00000394633 TUBGCP6Q96RT7 1819 aa22.55■■□□□ 1.2
PCDHA1-202ENST00000394633 SLC4A2P04920 1241 aa22.54■■□□□ 1.2
PCDHA1-202ENST00000394633 PKP1Q13835 747 aa22.54■■□□□ 1.2
PCDHA1-202ENST00000394633 MCTP1Q6DN14 999 aa22.54■■□□□ 1.2
PCDHA1-202ENST00000394633 LMOD2Q6P5Q4 547 aa22.53■■□□□ 1.2
PCDHA1-202ENST00000394633 NFAT5O94916 1531 aa22.53■■□□□ 1.2
PCDHA1-202ENST00000394633 MIS18AQ9NYP9 233 aa22.53■■□□□ 1.2
PCDHA1-202ENST00000394633 ST18O60284 1047 aa22.52■■□□□ 1.2
PCDHA1-202ENST00000394633 G2E3Q7L622 706 aa22.52■■□□□ 1.2
PCDHA1-202ENST00000394633 LMBRD1Q9NUN5 540 aa22.52■■□□□ 1.2
PCDHA1-202ENST00000394633 LTN1O94822 1766 aa22.52■■□□□ 1.2
PCDHA1-202ENST00000394633 ALS2Q96Q42 1657 aa22.52■■□□□ 1.2
PCDHA1-202ENST00000394633 NASPP49321 788 aaPredicted RBP22.51■■□□□ 1.19
PCDHA1-202ENST00000394633 BRINP3Q76B58 766 aa22.51■■□□□ 1.19
PCDHA1-202ENST00000394633 CWC22Q9HCG8 908 aaKnown RBP22.51■■□□□ 1.19
PCDHA1-202ENST00000394633 REC8O95072 547 aa22.51■■□□□ 1.19
PCDHA1-202ENST00000394633 CCDC173Q0VFZ6 552 aa22.51■■□□□ 1.19
PCDHA1-202ENST00000394633 ZGPATQ8N5A5 531 aaKnown RBP22.51■■□□□ 1.19
PCDHA1-202ENST00000394633 PPP1R9BQ96SB3 815 aa22.51■■□□□ 1.19
PCDHA1-202ENST00000394633 SBNO1A3KN83 1393 aa22.51■■□□□ 1.19
PCDHA1-202ENST00000394633 FLT4P35916 1363 aa22.51■■□□□ 1.19
PCDHA1-202ENST00000394633 ERC2O15083 957 aa22.5■■□□□ 1.19
PCDHA1-202ENST00000394633 HMMRO75330 724 aa22.5■■□□□ 1.19
PCDHA1-202ENST00000394633 OSBPL3Q9H4L5 887 aa22.5■■□□□ 1.19
PCDHA1-202ENST00000394633 F6X3S4 739 aa22.49■■□□□ 1.19
PCDHA1-202ENST00000394633 ZNF445P59923 1031 aa22.49■■□□□ 1.19
PCDHA1-202ENST00000394633 ARHGEF10O15013 1369 aa22.49■■□□□ 1.19
PCDHA1-202ENST00000394633 AMPHP49418 695 aa22.49■■□□□ 1.19
PCDHA1-202ENST00000394633 PDE1AP54750 535 aa22.49■■□□□ 1.19
PCDHA1-202ENST00000394633 SLC4A10Q6U841 1118 aa22.49■■□□□ 1.19
PCDHA1-202ENST00000394633 SLAIN2Q9P270 581 aa22.49■■□□□ 1.19
PCDHA1-202ENST00000394633 PXDNQ92626 1479 aa22.48■■□□□ 1.19
PCDHA1-202ENST00000394633 ZDHHC9Q9Y397 364 aa22.47■■□□□ 1.19
PCDHA1-202ENST00000394633 NPHP3Q7Z494 1330 aa22.47■■□□□ 1.19
PCDHA1-202ENST00000394633 CCT4P50991 539 aaKnown RBP22.47■■□□□ 1.19
PCDHA1-202ENST00000394633 MTHFSDQ2M296 383 aaKnown RBP22.47■■□□□ 1.19
PCDHA1-202ENST00000394633 CAVIN1Q6NZI2 390 aaKnown RBP22.47■■□□□ 1.19
PCDHA1-202ENST00000394633 TSPYL4Q9UJ04 414 aa22.47■■□□□ 1.19
PCDHA1-202ENST00000394633 ZSCAN23Q3MJ62 389 aa22.46■■□□□ 1.19
PCDHA1-202ENST00000394633 SLIT3O75094 1523 aa22.46■■□□□ 1.19
PCDHA1-202ENST00000394633 FAM208AQ9UK61 1670 aaKnown RBP22.46■■□□□ 1.19
PCDHA1-202ENST00000394633 HOXC9P31274 260 aa22.46■■□□□ 1.19
PCDHA1-202ENST00000394633 MED1Q15648 1581 aaPredicted RBP22.45■■□□□ 1.18
PCDHA1-202ENST00000394633 NCLP19338 710 aaKnown RBP22.45■■□□□ 1.18
PCDHA1-202ENST00000394633 UBE2Q2Q8WVN8 375 aa22.45■■□□□ 1.18
PCDHA1-202ENST00000394633 SALL3Q9BXA9 1300 aa22.44■■□□□ 1.18
PCDHA1-202ENST00000394633 LTBP4Q8N2S1 1624 aa22.44■■□□□ 1.18
PCDHA1-202ENST00000394633 GCP02774 474 aa22.44■■□□□ 1.18
PCDHA1-202ENST00000394633 RTF1Q92541 710 aaKnown RBP22.43■■□□□ 1.18
PCDHA1-202ENST00000394633 EXOC6BQ9Y2D4 811 aa22.43■■□□□ 1.18
PCDHA1-202ENST00000394633 GNAI2P04899 355 aa22.43■■□□□ 1.18
PCDHA1-202ENST00000394633 LRRC37A3O60309 1634 aa22.43■■□□□ 1.18
PCDHA1-202ENST00000394633 ZBTB7CA1YPR0 619 aa22.42■■□□□ 1.18
PCDHA1-202ENST00000394633 N4BP2Q86UW6 1770 aaPredicted RBP22.42■■□□□ 1.18
PCDHA1-202ENST00000394633 KDRP35968 1356 aa22.42■■□□□ 1.18
PCDHA1-202ENST00000394633 PRPF40AO75400 957 aaKnown RBP22.42■■□□□ 1.18
PCDHA1-202ENST00000394633 TSHZ3Q63HK5 1081 aa22.42■■□□□ 1.18
PCDHA1-202ENST00000394633 GPT2Q8TD30 523 aa22.42■■□□□ 1.18
PCDHA1-202ENST00000394633 TNS3Q68CZ2 1445 aa22.42■■□□□ 1.18
PCDHA1-202ENST00000394633 ANP32BQ92688 251 aaKnown RBP22.41■■□□□ 1.18
PCDHA1-202ENST00000394633 CACNA1FO60840 1977 aa22.41■■□□□ 1.18
PCDHA1-202ENST00000394633 KCNH5Q8NCM2 988 aa22.4■■□□□ 1.18
PCDHA1-202ENST00000394633 CABLES1Q8TDN4 633 aa22.4■■□□□ 1.18
PCDHA1-202ENST00000394633 LTV1Q96GA3 475 aaPredicted RBP22.4■■□□□ 1.18
PCDHA1-202ENST00000394633 ESYT1Q9BSJ8 1104 aa22.4■■□□□ 1.18
PCDHA1-202ENST00000394633 NEK4P51957 841 aa22.39■■□□□ 1.18
PCDHA1-202ENST00000394633 CHAMP1Q96JM3 812 aa22.39■■□□□ 1.18
PCDHA1-202ENST00000394633 RBSNQ9H1K0 784 aa22.39■■□□□ 1.18
PCDHA1-202ENST00000394633 RBM27Q9P2N5 1060 aaKnown RBP22.39■■□□□ 1.18
PCDHA1-202ENST00000394633 PHRF1Q9P1Y6 1649 aaKnown RBP22.39■■□□□ 1.17
PCDHA1-202ENST00000394633 TMX3Q96JJ7 454 aa22.39■■□□□ 1.17
PCDHA1-202ENST00000394633 EYA1Q99502 592 aa22.39■■□□□ 1.17
PCDHA1-202ENST00000394633 LRRCC1Q9C099 1032 aa22.38■■□□□ 1.17
PCDHA1-202ENST00000394633 SPATA31A3Q5VYP0 1347 aa22.38■■□□□ 1.17
Retrieved 100 of 20,778 RNA–protein pairs in 17 ms